| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,079,125 | T→C | intergenic (‑19572/‑52978) | unknown ← / → unknown | tRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,079,125 | 0 | T | C | 100.0% | 233.0 / NA | 81 | intergenic (‑19572/‑52978) | unknown/unknown | tRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (41/40); total (41/40) | |||||||||||
GGTATCCAGTTCGGCGAAGGTACAACCCTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCTCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATACCCAAATCCGTCTGCGCAATCACGTCAAAACCGAAATCCGCCAACACATCCGCCATTTCTCTGACCTTG > 1/1078880‑1079366 | ggTATCCAGTTCGGCGAAGGTACAACCCTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCtt > 1:842553/1‑251 (MQ=255) gTTCGGCGAAGGTACAACCCTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCa > 1:577494/1‑251 (MQ=255) cGGCGAAGGTACAACCCTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAg < 1:847711/251‑1 (MQ=255) cGAAGGTACAACCCTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCg < 1:259488/250‑1 (MQ=255) aaGGTACAACCCTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTG‑‑‑CAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGa < 1:358666/251‑1 (MQ=255) ggTACAACCCTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCgg > 1:115860/1‑251 (MQ=255) gTACAACCCTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTc > 1:897508/1‑233 (MQ=255) gTACAACCCTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCgg < 1:466831/250‑1 (MQ=255) gTACAACCCTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGa > 1:553604/1‑251 (MQ=255) gTACAACCCTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGa > 1:167337/1‑251 (MQ=255) gTACAACCCTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGa > 1:619260/1‑251 (MQ=255) aCCCTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAAtata > 1:237863/1‑251 (MQ=255) aCCCTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAAtata > 1:129576/1‑251 (MQ=255) cccTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCgg < 1:883987/232‑1 (MQ=255) ccTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCGCATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAAc < 1:651465/251‑1 (MQ=255) ccTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAAc < 1:283389/251‑1 (MQ=255) ccTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAAc < 1:476843/251‑1 (MQ=255) ccTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAAc < 1:656191/251‑1 (MQ=255) ctgctgCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAAc > 1:749343/1‑250 (MQ=255) tgctgcGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAAccc < 1:876142/251‑1 (MQ=255) tgctgcGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAAccc < 1:199646/251‑1 (MQ=255) gAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGt > 1:257478/1‑251 (MQ=255) gAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGCGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGt > 1:4827/1‑251 (MQ=255) ataatGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAat > 1:138742/1‑228 (MQ=255) tcgtAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAAc < 1:85892/225‑1 (MQ=255) tAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAaccac < 1:206806/251‑1 (MQ=255) tAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAaccac < 1:149228/251‑1 (MQ=255) tAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAacca < 1:336678/250‑1 (MQ=255) aaCCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGGGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAaccacc < 1:733540/251‑1 (MQ=255) aaCCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAAccc < 1:261237/251‑1 (MQ=255) gCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAAc > 1:82180/1‑250 (MQ=255) aCGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGAttt < 1:79771/251‑1 (MQ=255) cGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAg < 1:23586/167‑1 (MQ=255) gCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAAccc < 1:16104/177‑1 (MQ=255) tGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACgcgc < 1:738875/251‑1 (MQ=255) aaTCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTaaaa < 1:725659/251‑1 (MQ=255) aTCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAAt < 1:702345/251‑1 (MQ=255) aTCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAAt < 1:357637/251‑1 (MQ=255) cGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCAtttt > 1:765832/1‑251 (MQ=255) ggATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCg < 1:744540/210‑1 (MQ=255) gATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCa > 1:380505/1‑251 (MQ=255) tCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAacca < 1:415219/172‑1 (MQ=255) tCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCaa > 1:854303/1‑250 (MQ=255) cGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCaacga > 1:696460/1‑251 (MQ=255) gTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAata < 1:795795/137‑1 (MQ=255) gTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAAcgc < 1:6999/161‑1 (MQ=255) gTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTaaaa > 1:798943/1‑235 (MQ=255) gTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCaacgaa > 1:293658/1‑251 (MQ=255) ctgcAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCaacgaacg < 1:410717/245‑1 (MQ=255) ctgcAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGc > 1:37408/1‑250 (MQ=255) tgcAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGccc < 1:579813/251‑1 (MQ=255) gcAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTcggcgg < 1:312026/207‑1 (MQ=255) cacGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGCAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTttctt > 1:865955/1‑251 (MQ=255) cGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCAt > 1:795895/1‑105 (MQ=255) cGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAAcgc > 1:416045/1‑206 (MQ=255) gTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAAcgc < 1:95650/137‑1 (MQ=255) gTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCggg > 1:815242/1‑249 (MQ=255) gTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCggg > 1:708113/1‑249 (MQ=255) gACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTaaaa > 1:804818/1‑206 (MQ=255) gACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGa > 1:721204/1‑251 (MQ=255) aCGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGa < 1:255998/250‑1 (MQ=255) gAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAAc > 1:146992/1‑109 (MQ=255) aaTTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAAccc < 1:218268/110‑1 (MQ=255) gCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAAcgc > 1:152903/1‑122 (MQ=255) cTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATACCCAAATc < 1:774034/250‑1 (MQ=255) cTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATACCCAAATCCGTCTgc < 1:566489/250‑1 (MQ=255) gTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATACCCAAATc > 1:821952/1‑241 (MQ=255) gTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATACCCAAATCCGTCTGCGCa > 1:537298/1‑251 (MQ=255) gTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATACCCAAATCCGTCTGCGCa > 1:307165/1‑251 (MQ=255) ccGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATACCCAAATCCGTCTGCGCAATCa < 1:739830/249‑1 (MQ=255) gCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATACCCAAATCCGTCTGCGCAATCACGTCa > 1:289273/1‑251 (MQ=255) aTGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATACCCAAATCCGTCTGCGCAATCACGTCAAAAc < 1:720459/251‑1 (MQ=255) ggCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAACTGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATACCCAAATCCg > 1:446489/1‑227 (MQ=255) ggCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTc > 1:531818/1‑180 (MQ=255) ggCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATAccc > 1:365879/1‑220 (MQ=255) ggCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATACCCAAATCCGTCTGCGCAATCACGTCAAAACCGa > 1:780107/1‑251 (MQ=255) cGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTTTTCCGGGCTGTCGATACCCAAATCCGTc < 1:444292/220‑1 (MQ=255) cAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATACCCAAATc > 1:224085/1‑213 (MQ=255) cAATAATTTGGCGCGATTTTTCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGGAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAATTGGCATTTTCAATGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATACCCaaa > 1:489529/1‑211 (MQ=255) tCGCGTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATACCCAAATCCGTCTGCGCAATCACGTCAAAACCGAAATCCGCCAACACATCCGCCATTTCTCTGAcc < 1:13062/251‑1 (MQ=255) cgTCATTGCCCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATACCCAAATCCGTCTGCGCAATCACGTCAAAACCGAAATCCGCCAACACATCCGCCATTTCTCTGAccttg > 1:813018/1‑251 (MQ=255) | GGTATCCAGTTCGGCGAAGGTACAACCCTGCTGCGGGCTGAAAAATAATGCGTCGTAACCGAACCCGTTTTCGCCTTTTTCTTCAAAAGCAATGACGCCATGGCATTCGCCTTGCGCGATAATCGGTGACGGATCCGTTGGATGCTGCAACAACACGATGGTGCTGACGAATTTGGCTTTGCGCTGTTCAGCCGGCACATGGGCTAATTCCGCCAATAATTTGGCGCGATTTTTCGCGTCATTGCTCTCTTCGCCGGCATAGCGTGCGGAATATAACCCCGGCGCGCCGTTCAACGCGTCAACCACCAACCCGGAATCGTCGGCAATGGCAGGTAAACCGGATTTTTCGGCGGCATAACGCGCTTTTAAAATGGCATTTTCAACGAACGTCAGCCCCGTTTCTTCCGGGCTGTCGATACCCAAATCCGTCTGCGCAATCACGTCAAAACCGAAATCCGCCAACACATCCGCCATTTCTCTGACCTTG > 1/1078880‑1079366 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |