Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,065,773 G→A intergenic (‑6220/‑66330) unknown ← / → unknown tRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,065,7730GA100.0% 164.5 / NA 58intergenic (‑6220/‑66330)unknown/unknowntRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (29/29);  total (29/29)

GGTTCGTGCATTTTAGATGAATGTGAAGCTCTAAATATTTACCTTTGAGATAATCAAAACTTTCGCCATCATCATCAAACACTGTGATATTTCTTTCTCCTTGATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGTGTATCTACCGTGATTTTTTCGCCGCCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGTTCGTTATCTTGATGTGCTTTCCAAAGTGTATTGTATAAATAA  >  1/1065526‑1066007
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                          
ggTTCGTGCATTTTAGATGAATGTGAAGCTCTAAATATTTACCTTTGAGATAATCAAAACTTTCGCCATCATCATCAAACACTGTGATATTTCTTTCTCCTTGATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGccacca                                                                                                                                                                                                                                         >  1:129789/1‑251 (MQ=255)
                aTGAATGTGAAGCTCTAAATATTTACCTTTGAGATAATCAAAACTTTCGCCATCATCATCAAACACTGTGATATTTCTTTCTCCTTGATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATg                                                                                                                                                                                                                           <  1:56724/249‑1 (MQ=255)
                         aaGCTCTAAATATTTACCTTTGAGATAATCAAAACTTTCGCCATCATCATCAAACACTGTGATATTTCTTTCTCCTTGATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAg                                                                                                                                                                                                                 <  1:861545/250‑1 (MQ=255)
                                   tatTTACCTTTGAGATAATCAAAACTTTCGCCATCATCATCAAACACTGTGATATTTCTTTCTCCTTGATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATAcc                                                                                                                                                                                                          >  1:475715/1‑247 (MQ=255)
                                                        aaaCTTTCGCCATCATCATCAAACACTGTGATATTTCTTTCTCCTTGATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAg                                                                                                                                                                                                                 >  1:855142/1‑219 (MQ=255)
                                                                       tcatcaAACACTGTGATATTTCTTTCTCCTTGATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTAct                                                                                                                                                                    >  1:102440/1‑249 (MQ=255)
                                                                       tcatc‑aACACTGTGATATTTCTTTCTCCTTGATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACTCTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCtt                                                                                                                                                                 >  1:483844/1‑251 (MQ=255)
                                                                        catcaAACACTGTGATATTTCTTTCTCCTTGATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCtt                                                                                                                                                                 >  1:776713/1‑251 (MQ=255)
                                                                         atcaAACACTGTGATATTTCTTTCTCCTTGATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCttt                                                                                                                                                                >  1:522552/1‑251 (MQ=255)
                                                                            aaaCACTGTGATATTTCTTTCTCCTTGATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGAt                                                                                                                                                             <  1:647907/251‑1 (MQ=255)
                                                                                 cTGTGATATTTCTTTCTCCTTGATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATAcc                                                                                                                                                                                                          <  1:900137/201‑1 (MQ=255)
                                                                                           tctttctCCTTGATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTActc                                                                                                                                                                   <  1:742549/230‑1 (MQ=255)
                                                                                              ttctCCTTGATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATg                                                                                                                                           >  1:254421/1‑251 (MQ=255)
                                                                                              ttctCCTTGATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATg                                                                                                                                           <  1:771063/251‑1 (MQ=255)
                                                                                                      gATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAgtgt                                                                                                                                                                                                                      <  1:340541/168‑1 (MQ=255)
                                                                                                      gATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATcc                                                                                                                                                                          <  1:105814/212‑1 (MQ=255)
                                                                                                                 ggCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCAc                                                                                                                         >  1:759786/1‑250 (MQ=255)
                                                                                                                          aataatTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAAc                                                                                                                                                                                                                                   <  1:558056/135‑1 (MQ=255)
                                                                                                                          aataatTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATcc                                                                                                                                                                          >  1:504267/1‑192 (MQ=255)
                                                                                                                                tctcGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAatcatc                                                                                                         <  1:734413/251‑1 (MQ=255)
                                                                                                                                         tcatcaGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACcac                                                                                                                                                <  1:620599/203‑1 (MQ=255)
                                                                                                                                         tcatcaGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTg                                                                                                 >  1:389906/1‑250 (MQ=255)
                                                                                                                                               gATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAAtgt                                                                                          >  1:383631/1‑251 (MQ=255)
                                                                                                                                               gATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAAtgt                                                                                          >  1:772692/1‑251 (MQ=255)
                                                                                                                                                aTAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATc                                                                                                                              >  1:656139/1‑214 (MQ=255)
                                                                                                                                                   aTGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTActc                                                                                                                                                                   <  1:78019/174‑1 (MQ=255)
                                                                                                                                                   aTGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACcac                                                                                                                                                >  1:150435/1‑193 (MQ=255)
                                                                                                                                                   aTGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGttt                                                                                      >  1:638070/1‑251 (MQ=255)
                                                                                                                                                     gTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGttttt                                                                                    >  1:424429/1‑251 (MQ=255)
                                                                                                                                                        tttttATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATc                                                                                 <  1:258257/251‑1 (MQ=255)
                                                                                                                                                          tttATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCAt                                                                               >  1:101042/1‑251 (MQ=255)
                                                                                                                                                                   ttttCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGAt                                                                      <  1:227299/251‑1 (MQ=255)
                                                                                                                                                                    tttCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAGTTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGAt                                                                      >  1:409313/1‑250 (MQ=255)
                                                                                                                                                                    tttCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAat                                                                                                             >  1:140164/1‑211 (MQ=255)
                                                                                                                                                                    tttCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGAt                                                                      >  1:863613/1‑250 (MQ=255)
                                                                                                                                                                           ccATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGaaa                                                              >  1:91628/1‑251 (MQ=255)
                                                                                                                                                                                 gAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGaa                                                               <  1:556492/244‑1 (MQ=255)
                                                                                                                                                                                         cTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGtt                                                                                                                                                       >  1:437119/1‑148 (MQ=255)
                                                                                                                                                                                         cTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAAtg                                                                                           <  1:406713/208‑1 (MQ=255)
                                                                                                                                                                                          ttCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAAtata                                               >  1:80330/1‑251 (MQ=255)
                                                                                                                                                                                                ctctTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGTTc                                          <  1:1217/250‑1 (MQ=255)
                                                                                                                                                                                                ctctTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGTTCg                                         <  1:329501/251‑1 (MQ=255)
                                                                                                                                                                                                  ctTAAAAATAAAGGGATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCa                                                                                <  1:113948/210‑1 (MQ=255)
                                                                                                                                                                                                                gATCCTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGTTCGTTATCTTGATGTGCtt                         >  1:717835/1‑251 (MQ=255)
                                                                                                                                                                                                                   ccTTTCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGTTCGTTATCTTGATGTGCTTTc                       >  1:297128/1‑250 (MQ=255)
                                                                                                                                                                                                                     tttCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGTTCGTTATCTTGATGTGCTTTCCaa                    <  1:884584/251‑1 (MQ=255)
                                                                                                                                                                                                                      ttCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAgg                                             >  1:312282/1‑225 (MQ=255)
                                                                                                                                                                                                                      ttCTAATGGCGTATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGTTCGTTATCTTGATGTGCTTTCCaaa                   >  1:576328/1‑251 (MQ=255)
                                                                                                                                                                                                                             ggcgtATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGtt                                           <  1:146039/217‑1 (MQ=255)
                                                                                                                                                                                                                                 tATCTACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGAt                                                                      >  1:885626/1‑189 (MQ=255)
                                                                                                                                                                                                                                     tACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCGCCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGTTCGTTATCTTGATGTGCTTTCCAAAGTGTATTGTataaat    <  1:289299/251‑1 (MQ=255)
                                                                                                                                                                                                                                     tACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGTTCGTTATCTTGATGTGCTTTCCAAAGTGTATTGTataaat    <  1:30232/251‑1 (MQ=255)
                                                                                                                                                                                                                                     tACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGTTCGTTATCTTGATGTGCTTTCCAAAGTGTATTGTataaat    <  1:216170/251‑1 (MQ=255)
                                                                                                                                                                                                                                     tACCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGTTCGTTATCTTGATGTGCTTTCCAAAGTGTATTGTataaat    <  1:173554/251‑1 (MQ=255)
                                                                                                                                                                                                                                      aCCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGTTCGTTATCTTGATGTGCTTTCCAAAGTGTATTGTataaata   <  1:334450/251‑1 (MQ=255)
                                                                                                                                                                                                                                      aCCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGTTCGTTATCTTGATGTGCTTTCCAAAGTGTATTGTataaata   >  1:730354/1‑251 (MQ=255)
                                                                                                                                                                                                                                      aCCGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGTTCGTTATCTTGATGTGCTTTCCAAAGTGTATTGTataaata   <  1:721059/251‑1 (MQ=255)
                                                                                                                                                                                                                                       ccgggATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCa                                                                                <  1:434112/169‑1 (MQ=255)
                                                                                                                                                                                                                                       ccGTGATTTTTTCGCCACCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGTTCGTTATCTTGATGTGCTTTCCAAAGTGTATTGTataaataa  <  1:523762/251‑1 (MQ=255)
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                          
GGTTCGTGCATTTTAGATGAATGTGAAGCTCTAAATATTTACCTTTGAGATAATCAAAACTTTCGCCATCATCATCAAACACTGTGATATTTCTTTCTCCTTGATTAATAAAAGGCATAATTAATAATTCTCGATAATCATCAGATAATGTATTTTTATGACCTTTTCTCGCCATTGGAATGACACTTCCAGCTCTTAAAAATAAAGGGATCCTTTCTAATGGTGTATCTACCGTGATTTTTTCGCCGCCATTAAACCATTTATGAGTGTAAAAGTCATACCAGCCTGCAAAATTTTGTGGAAGATAAACATCCCGTACTCTTTGATTTGGTTCTACCACAGATGCGACTAATAAATCTTCACCAAGAAGATAATCATCATTTTCTGCAAATGTGTTTTTATCATGTTCATGATCAAGGAAAGTTGGACGCAATATAGGTTCGTTATCTTGATGTGCTTTCCAAAGTGTATTGTATAAATAA  >  1/1065526‑1066007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑