Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,063,909 A→C intergenic (‑4356/‑68194) unknown ← / → unknown tRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,063,9090AC100.0% 212.7 / NA 76intergenic (‑4356/‑68194)unknown/unknowntRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (37/39);  total (37/39)

TCTTCACGTTGAGTCGAACGTAAGTGTGCGAAATAAATTCGGTCGGAAAATTGTTCCGTCATTTTCACTAAATCATTATCAGAACGCACCCCATAAGAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATAGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAATATCTTGATCACTCATTTTTTCGTAATAGGCTTTTGCTGCGGCTATTTCGTCTTTGTTATAGGTTTGTTCTGCAC  >  1/1063671‑1064154
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                     
tCTTCACGTTGAGTCGAACGTAAGTGTGCGAAATAAATTCGGTCGG‑AAATTGTTCCGTCATTTTCACTAAATCATTATCAGAACGCACCCCATAAGAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCg                                                                                                                                                                                                                                          >  1:22292/1‑251 (MQ=255)
  ttCACGTTGAGTCGAACGTAAGTGTGCGAAATAAATTCGGTCGGAAAATTGTTCCGTCATTTTCACTAAATCATTATCAGAACGCACCCCATAAGAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGGGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGa                                                                                                                                                                                                                                         >  1:90018/1‑251 (MQ=255)
                                                                 cACTAAATCATTATCAGAACGCACCCCATAAGAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCtt                                                                                                                                                                          >  1:699696/1‑251 (MQ=255)
                                                                    tAAATCATTATCAGAACGCACCCCATAAGAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTtat                                                                                                                                                                       <  1:590376/251‑1 (MQ=255)
                                                                      aaTCATTATCAGAACGCACCCCATAAGAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAg                                                                                                                                                                     <  1:353/251‑1 (MQ=255)
                                                                      aaTCATTATCAGAACGCACCCCATAAGAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAg                                                                                                                                                                     <  1:311680/251‑1 (MQ=255)
                                                                       aTCATTATCAGAACGCACCCCATAAGAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAac                                                                                                                                                                                             >  1:409757/1‑226 (MQ=255)
                                                                            tATCAGAACGCACCCCATAAGAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGAt                                                                                                                                                                 >  1:900217/1‑249 (MQ=255)
                                                                            tATCAGAACGCACCCCATAAGAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGAt                                                                                                                                                                 >  1:483104/1‑249 (MQ=255)
                                                                                  aaCGCACCCCATAAGAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTg                                                                                                                                                          <  1:176046/250‑1 (MQ=255)
                                                                                        ccccATAAGAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTg                                                                                                                                                                                   <  1:304380/219‑1 (MQ=255)
                                                                                           cATAAGAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAatat                                                                                                                                                                             <  1:166143/222‑1 (MQ=255)
                                                                                           cATAAGAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTtat                                                                                                                                                                       <  1:338402/228‑1 (MQ=255)
                                                                                           cATAAGAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAAt                                                                                                                                                >  1:898079/1‑251 (MQ=255)
                                                                                                gAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCAt                                                                                                                                            >  1:282563/1‑250 (MQ=255)
                                                                                                        acacATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGtat                                                                                                                                   <  1:378261/251‑1 (MQ=255)
                                                                                                          acaTTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAAttt                                                                                                                                                                                                                             <  1:368916/159‑1 (MQ=255)
                                                                                                            aTTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATCAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGc                                                                                                                                >  1:451168/1‑250 (MQ=255)
                                                                                                            aTTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGcc                                                                                                                               <  1:67587/251‑1 (MQ=255)
                                                                                                            aTTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGcc                                                                                                                               <  1:227453/251‑1 (MQ=255)
                                                                                                             ttGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAGGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGc                                                                                                                                >  1:427654/1‑249 (MQ=255)
                                                                                                             ttGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAac                                                                                                                                                                                             <  1:722347/188‑1 (MQ=255)
                                                                                                             ttGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAg                                                                                                                                                                     >  1:147094/1‑212 (MQ=255)
                                                                                                             ttGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGc                                                                                                                                >  1:514584/1‑249 (MQ=255)
                                                                                                             ttGTAAAGCCATTAGCCGGTAATGGATGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGc                                                                                                                                >  1:247638/1‑249 (MQ=255)
                                                                                                                  aaGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCttcttc                                                                                                                         <  1:701700/251‑1 (MQ=255)
                                                                                                                    gCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAgg                                                                                                                                                                                     <  1:536810/189‑1 (MQ=255)
                                                                                                                          aGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAg                                                                                                                                                                     >  1:620597/1‑199 (MQ=255)
                                                                                                                           gCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCttt                                                                                                                                                                         >  1:109650/1‑194 (MQ=255)
                                                                                                                                    ggTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTg                                                                                                        >  1:604517/1‑250 (MQ=255)
                                                                                                                                        gAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAg                                                                                                                                                                     >  1:627010/1‑185 (MQ=255)
                                                                                                                                         aGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCttcttc                                                                                                                         >  1:201727/1‑228 (MQ=255)
                                                                                                                                            ttCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAatat                                                                                               <  1:164549/251‑1 (MQ=255)
                                                                                                                                            ttCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAatat                                                                                               <  1:780004/251‑1 (MQ=255)
                                                                                                                                              cGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGt                                                                                                               <  1:782792/233‑1 (MQ=255)
                                                                                                                                                  aaaCCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAg                                                                                         <  1:574528/251‑1 (MQ=255)
                                                                                                                                                  aaaCCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAg                                                                                         <  1:331558/251‑1 (MQ=255)
                                                                                                                                                    gccATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAggc                                                                                                                                     <  1:323046/204‑2 (MQ=255)
                                                                                                                                                       aTTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGc                                                                                    <  1:12745/251‑1 (MQ=255)
                                                                                                                                                              atCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACt                                                                                                                                                           <  1:481158/173‑1 (MQ=255)
                                                                                                                                                              atCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGaa                                                                             >  1:514124/1‑251 (MQ=255)
                                                                                                                                                               tCTTCAATGGTGGATACAATACGTGGTAATGCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGGCTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAat                                                                            <  1:199584/251‑1 (MQ=255)
                                                                                                                                                                cTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAg                                                                                                                                 <  1:833945/197‑1 (MQ=255)
                                                                                                                                                                cTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGccc                                                                                                                    >  1:8273/1‑210 (MQ=255)
                                                                                                                                                                cTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGccc                                                                                                                    <  1:46163/210‑1 (MQ=255)
                                                                                                                                                                cTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAata                                                                           >  1:110584/1‑251 (MQ=255)
                                                                                                                                                                 ttCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAatat                                                                          <  1:502202/251‑1 (MQ=255)
                                                                                                                                                                 ttCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACCTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAatat                                                                          <  1:425102/251‑1 (MQ=255)
                                                                                                                                                                       ggtggATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAac                                                                                                                                                                                             <  1:789650/130‑1 (MQ=255)
                                                                                                                                                                       ggtggATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAgg                                                                                                                                      <  1:343105/185‑1 (MQ=255)
                                                                                                                                                                            aTACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAg                                                                                                                                                                     <  1:680378/149‑1 (MQ=255)
                                                                                                                                                                            aTACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGc                                                                                                                                >  1:188671/1‑186 (MQ=255)
                                                                                                                                                                               cAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAAt                                                                                                                                                                                                                               >  1:429792/1‑88 (MQ=255)
                                                                                                                                                                               cAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACtt                                                                                                                                                                                         >  1:333959/1‑126 (MQ=255)
                                                                                                                                                                               cAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGcc                                                                                                                               >  1:303577/1‑184 (MQ=255)
                                                                                                                                                                                                 aaaTTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATc                                                                                                                                           >  1:699808/1‑154 (MQ=255)
                                                                                                                                                                                                 aaaTTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAATATCTTGATCACTCATTTTTTCGTAATAGGCtttt                                          >  1:104343/1‑251 (MQ=255)
                                                                                                                                                                                                   aTTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAATATCTTGATCACTCATTTTTTCGTAATAGGCTTTtgc                                        <  1:197466/251‑1 (MQ=255)
                                                                                                                                                                                                          gtggtgGATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTTTTCTGCCCCCGGTAAGcc                                                                                                          <  1:899259/178‑1 (MQ=255)
                                                                                                                                                                                                             gtggATCATCAGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAATATCTTGATCACTCATTTTTTCGTAATAGGCTTTTGCTGCGGCTAtt                              >  1:667190/1‑251 (MQ=255)
                                                                                                                                                                                                                  tcatcaGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAg                                                                                                            >  1:492996/1‑168 (MQ=255)
                                                                                                                                                                                                                  tcatcaGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCaa                                                                                                     >  1:885069/1‑175 (MQ=255)
                                                                                                                                                                                                                  tcatcaGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTa                                                                                             <  1:793791/183‑1 (MQ=255)
                                                                                                                                                                                                                  tcatcaGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAATATCTTGATCACTCATTTTTTCGTAATAGGCTTTTGCTGCGGCTATTTCGt                          >  1:51937/1‑250 (MQ=255)
                                                                                                                                                                                                                  tcatcaGGGTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAATATCTTGATCACTCATTTTTTCGTAATAGGCTTTTGCTGCGGCTATTTCGt                          >  1:734874/1‑250 (MQ=255)
                                                                                                                                                                                                                        gggTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGcc                                                                                                                               <  1:899847/143‑1 (MQ=255)
                                                                                                                                                                                                                        gggTGAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAat                                                                            <  1:499130/194‑1 (MQ=255)
                                                                                                                                                                                                                            gAATCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAataata                                                                                                >  1:526099/1‑170 (MQ=255)
                                                                                                                                                                                                                             aaTCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAATATCTTGATCACTCATTTTTTCGTAATAGGCTTTTGCTGCGGCTATTTCGTCTTTGTTATAgg              <  1:283708/251‑1 (MQ=255)
                                                                                                                                                                                                                              aTCGCCATTTTAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACAAGTAAGCTGTTGAATATCTTGATCACTCATTTTTTCGTAATAGGCTTTTGCTGCGGCTATTTCGTCTTTGTTATAGGt             <  1:645264/251‑1 (MQ=255)
                                                                                                                                                                                                                                     ttttAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATc                                                                                                                                                                            <  1:402338/85‑1 (MQ=255)
                                                                                                                                                                                                                                     ttttAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAATATCTTGATCACTCATTTTTTCGTAATAGGCTTTTGCTGCGGCTATTTCGTCTTTGTTATAGGt             >  1:894871/1‑244 (MQ=255)
                                                                                                                                                                                                                                     ttttAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAATATCTTGATCACTCATTTTTTCGTAATAGGCTTTTGCTGCGGCTATTTCGTCTTTGTTATAGGTTTGtt        >  1:543033/1‑249 (MQ=255)
                                                                                                                                                                                                                                     ttttAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAATATCTTGATCACTCATTTTTTCGTAATAGGCTTTTGCTGCGGCTATTTCGTCTTTGTTATAGGTTTGtt        >  1:480597/1‑249 (MQ=255)
                                                                                                                                                                                                                                     ttttAATATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAATATCTTGATCACTCATTTTTTCGTAATAGGCTTTTGCTGCGGCTATTTCGTCTTTGTTATAGGTTTGTTc       >  1:763149/1‑250 (MQ=255)
                                                                                                                                                                                                                                         aaTATCGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAATATCTTGATCACTCATTTTTTCGTAATAGGCTTTTGCTGCGGCTATTTCGTCTTTGTTATAGGTTTGTTCTGCAc  <  1:780321/251‑1 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                     
TCTTCACGTTGAGTCGAACGTAAGTGTGCGAAATAAATTCGGTCGGAAAATTGTTCCGTCATTTTCACTAAATCATTATCAGAACGCACCCCATAAGAACCGGTACACATTGTAAAGCCATTAGCCGGTAATGGTTGAGTTTCGACAAACCATTGCATATCTTCAATGGTGGATACAATACGTGGTAAACCTAAAATTGGACGTGGTGGATCATCAGGGTGAATCGCCATTTTAATATAGACTTCTTGAGCGACCGGTACAATTTCATTTAAAAAATAAGCTAAGTGAGTGTGGAACACTTCAGGTGAAATATCTTTATAGCGATCTAACTGACCTTGAAATTCATCTAAGGTATAGCCTTCTTCTGCCCCCGGTAAGCCTGCAATAATATTACGAGTAAGCTGTTGAATATCTTGATCACTCATTTTTTCGTAATAGGCTTTTGCTGCGGCTATTTCGTCTTTGTTATAGGTTTGTTCTGCAC  >  1/1063671‑1064154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑