| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,020,617 | C→T | intergenic (‑14161/‑14602) | unknown ← / → unknown | tRNA‑Gly‑GCC/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,020,617 | 0 | C | T | 100.0% | 214.1 / NA | 76 | intergenic (‑14161/‑14602) | unknown/unknown | tRNA‑Gly‑GCC/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (35/41); total (35/41) | |||||||||||
TTGTCGGAGCAGAATTAACCATGAGAACGAGCTTAACGGCTCGTTCATTTTTTAACGATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCCGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAGTGCGGTCAAAATTCGCAGCGTTTTCGCATTCTCGATCTTGGCACCGGCACCGGCGCGATTGCTTTGGCATTGGCTTCGGCGTTAAAACC > 1/1020371‑1020861 | ttGTCGGAGCAGAATTAACCATGAGAACGAGCTTAACGGCTCGTTCATTTTTTAACAATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCctgccg < 1:278483/251‑1 (MQ=255) gAATTAACCATGAGAACGAGCTTAACGGCTCGTTCATTTTTTTACAATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTTAATCAGGCGAATCCCTCGGAAAATGGCAAAAACGATGCACAGGGGTTATTGCAAATTTTGACGCAAAAGACTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTTGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCg > 1:143876/1‑251 (MQ=255) aaCCATGAGAACGAGCTTAACGGCTCGTTCATTTTTTAAAAATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGaaac > 1:792246/1‑248 (MQ=255) ccATGAGAACGAGCTTAACGGCTCGTTCATTTTTTAACAATGAACTACCAAAAATGGCTGCAACAGGCCATACAAACGTTAAATCAGGCGAATCCCTCGGAAAAAGGCAAAACCCATGCACAGGTGTTATTTCAATTTGTGACGCAAAAGCCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCAt > 1:82081/1‑251 (MQ=255) gagaACGAGCTTAACGGCTCGTTCATTTTTTAACAATGAAATACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCCATTTGGGACGCAAAAATCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAAAGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAAACCATCGc > 1:469393/1‑250 (MQ=255) gaACGAGCTTAACGGCTCGTTCATTTTTTAACAATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCCTCGCttt > 1:701005/1‑250 (MQ=255) aGCTTAACGGCTCGTTCATTTTTTAACAATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAAACCCTCGGAAAATGGCAAAACCGATGCACAGGGGTTATTGCAATTTTTGACGCAAAAGTCTCGCGCTTTTATTC‑GGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATAtt > 1:237154/1‑249 (MQ=255) gCTTAACGGCTCGTTCATTTTTTAACAATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCt < 1:836905/243‑1 (MQ=255) cTTAACGGCTCGTTCATTTTTTAACAATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATtctc < 1:591737/251‑1 (MQ=255) cTTAACGGCTCGTTCATTTTTTAACAATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATtc < 1:561415/249‑1 (MQ=255) cTTAACGGCTCGTTCATTTTTTAACAATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATtc < 1:758951/249‑1 (MQ=255) cTTAACGGCTCGTTCATTTTTTAACAATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATtc < 1:276145/249‑1 (MQ=255) cTCGTTCATTTTTTAACAATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGaaaa < 1:582942/251‑1 (MQ=255) ttttttAACAATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATtcctgtctctttatacacat > 1:533333/1‑233 (MQ=255) ttttAACAATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATtc < 1:57471/231‑1 (MQ=255) ttttAACAATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATtc > 1:233139/1‑231 (MQ=255) tttAACAATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGt < 1:645523/251‑1 (MQ=255) acaaTGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGtt > 1:515713/4‑251 (MQ=255) acaaTGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGtt > 1:167708/4‑251 (MQ=255) aTGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGc > 1:179286/1‑250 (MQ=255) gAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGGCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGTTGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTGGGTGAAAAAGAGTTGTGGTCGTTGCCgg > 1:739583/1‑250 (MQ=255) aCCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGc < 1:231765/197‑1 (MQ=255) ccAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATg < 1:660070/251‑1 (MQ=255) acaaTGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATtc < 1:89594/212‑1 (MQ=255) tGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCggc < 1:541724/251‑1 (MQ=255) ggCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGTAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAAccc > 1:73000/1‑194 (MQ=255) ggCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCggca > 1:255824/1‑251 (MQ=255) gCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAATCCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAGCGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTAGATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCggca < 1:775461/250‑1 (MQ=255) cTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAag < 1:282493/217‑1 (MQ=255) cAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCggcaggca < 1:226854/250‑1 (MQ=255) ggCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGGAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGa > 1:701941/1‑251 (MQ=255) ggCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATtc > 1:359053/1‑197 (MQ=255) ggCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATtc < 1:464783/197‑1 (MQ=255) gCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTg < 1:503068/249‑1 (MQ=255) ccATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATtc < 1:101250/195‑1 (MQ=255) ccATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCg < 1:886678/218‑1 (MQ=255) cAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACg < 1:631327/251‑1 (MQ=255) cAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACg < 1:193507/251‑1 (MQ=255) cGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATg > 1:831962/1‑222 (MQ=255) ggCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTatat > 1:343782/1‑174 (MQ=255) aTCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATtg < 1:812933/251‑1 (MQ=255) cGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGgag < 1:313441/251‑1 (MQ=255) gAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGaa > 1:205343/1‑251 (MQ=255) ccGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGAtt > 1:828097/1‑251 (MQ=255) ccGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGAtt > 1:64624/1‑251 (MQ=255) aTGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGc > 1:199423/1‑250 (MQ=255) gCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGc > 1:267148/1‑126 (MQ=255) gCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATtc > 1:610002/1‑145 (MQ=255) gCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATtc < 1:373704/145‑1 (MQ=255) gCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGgag > 1:481073/1‑231 (MQ=255) gCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTgg > 1:234933/1‑241 (MQ=255) cacaGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATtggtgg < 1:697643/228‑1 (MQ=255) caGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGa > 1:149935/1‑251 (MQ=255) ggTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGaaa > 1:115618/1‑251 (MQ=255) gtgtTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCggc > 1:118975/1‑182 (MQ=255) gtgtTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTc < 1:705221/196‑1 (MQ=255) gtgtTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATtgg < 1:63073/220‑1 (MQ=255) gtgtTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGaaa < 1:225120/250‑1 (MQ=255) cAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACaaa < 1:555149/250‑1 (MQ=255) ccgagggattcgcctgatttaacgcTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAg < 1:616100/229‑1 (MQ=255) aaaGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAGTGCGGTCAAAAtt < 1:286264/251‑1 (MQ=255) cgcTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATtc > 1:124773/1‑107 (MQ=255) cTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGATAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTACACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAGTGCGGTCAAAATTCGCAGCGtttt > 1:899049/1‑251 (MQ=255) tttCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAGTGCGGTCAAAATTCGCAGCGTTTTCGCATTCTCGATc < 1:105820/251‑1 (MQ=255) gTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAg > 1:852967/1‑209 (MQ=255) aaaCGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAGTGCGGTCAAAATTCGCAGCGTTTTCGCATTCTCGATCTTggcac < 1:128052/250‑1 (MQ=255) ttGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAGTGCGGTCAAAATTCGCAGCGTTTTCGCATTCTCGATCTTGGcaccggcaccgg < 1:284992/251‑1 (MQ=255) ggATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAg > 1:228364/1‑196 (MQ=255) gATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAGTGCGGTCAAAATTCGCAGCGTTTTCGCATTCTCGATCTTGGCACCGGCACCGgcg < 1:195890/250‑1 (MQ=255) aaaCGCTGGAAAAACTGACCCCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGACAGCCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGACAGTGGCGATTGCCATTGAAAAGCTACAAAAGTGCGGTCAAAATTCGCAGCGTTTTCGCATTCTCGATCTTGGCACCGGCACCGGCGCGATTGCt < 1:89203/251‑1 (MQ=255) cTGGAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAGTGCGGTCAAAATTCGCAGCGTTTTCGCATTCTCGATCTTGGCACCGGCACCGGCGCGATTGCTTTGGc < 1:667572/251‑1 (MQ=255) ggAAAAACTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAGTGCGGTCAAAATTCGCAGCGTTTTCGCATTCTCGATCTTGGCACCGGCACCGGCGCGATTGCTTTGGCAt > 1:561854/1‑251 (MQ=255) aCTGACCGCACTTTTAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAGTGCGGTCAAAATTCGCAGCGTTTTCGCATTCTCGATCTTGGCACCGGCACCGGCGCGATTGCTTTGGCATTGGCtt > 1:878711/1‑251 (MQ=255) tttAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAGTGCGGTCAAAATTCGCAGCGTTTTCGCATTCTCGATCTTGGCACCGGCACCGGCGCGATTGCTTTGGCATTGGCTTCGGCGTTAAAAc < 1:677747/251‑1 (MQ=255) tttAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAGTGCGGTCAAAATTCGCAGCGTTTTCGCATTCTCGATCTTGGCACCGGCACCGGCGCGATTGCTTTGGCATTGGCTTCGGCGTTAAAAc < 1:381477/251‑1 (MQ=255) ttAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAGTGCGGTCAAAATTCGCAGCGTTTTCGCATTCTCGATCTTGGCACCGGCACCGGCGCGATTGCTTTGGCATTGGCTTCGGCGTTAAAAcc < 1:491383/251‑1 (MQ=255) ttAGCCTGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAGTGCGGTCAAAATTCGCAGCGTTTTCGCATTCTCGATCTTGGCACCGGCACCGGCGCGATTGCTTTGGCATTGGCTTCGGCGTTAAAAcc < 1:90961/251‑1 (MQ=255) | TTGTCGGAGCAGAATTAACCATGAGAACGAGCTTAACGGCTCGTTCATTTTTTAACGATGAACTACCAACAATGGCTGCAACAGGCCATACAAGCGTTAAATCAGGCGAATCCCTCGGAAAATGGCAAAACCGATGCACAGGTGTTATTGCAATTTGTGACGCAAAAGTCTCGCGCTTTTATTCTGGCTTTCGGTGAAACGGCATTGGATGAAAAAACGCTGGAAAAACTGACCGCACTTTTAGCCCGCCGTTTGCAGGGCGAACCCATCGCTTATATTCTCGGTGAAAAAGAGTTTTGGTCGTTGCCGTTAAATGTTTCGGCAGGCACGCTGATTCCACGCCCCGACACGGAAATATTGGTGGAGAAGGCAGTGGCGATTGCCATTGAAAAGCTACAAAAGTGCGGTCAAAATTCGCAGCGTTTTCGCATTCTCGATCTTGGCACCGGCACCGGCGCGATTGCTTTGGCATTGGCTTCGGCGTTAAAACC > 1/1020371‑1020861 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |