Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,009,963 G→A intergenic (‑3507/‑25256) unknown ← / → unknown tRNA‑Gly‑GCC/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,009,9630GA100.0% 199.1 / NA 75intergenic (‑3507/‑25256)unknown/unknowntRNA‑Gly‑GCC/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (33/42);  total (33/42)

CAGCGCCAAGCCATATTGAAAATCACTATATTGTGAATGTTGATTATGAATTTAATAAACATGTAATTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGGCTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATACGGGTGATTTTTTAGAATTAAACCAAGTGGATAATAAATTTATTTTAACGGTTATTCCTAAAAACAGCCCAAAGAAACGATTAA  >  1/1009725‑1010200
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                             
cagcGCCAAGCCATATTGAAAATCACTATATTGTGAATGTTGATTATGAATTTAATAAACATGTAATTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTg                                                                                                                                                                                                                                      <  1:899131/248‑1 (MQ=255)
cagcGCCAAGCCATATTGAAAATCACTATATTGTGAATGTTGATTATGAATTTAATAAACATGTAATTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGAt                                                                                                                                                                                                                                    <  1:889105/250‑1 (MQ=255)
                       cACTATATTGTGAATGTTGATTATGAATTTAATAAACATGTAATTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATg                                                                                                                                                                                                            <  1:221382/251‑1 (MQ=255)
                        aCTATATTGTGAATGTTGATTATGAATTTAATAAACATGTAATTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGAt                                                                                                                                                                                                                                    >  1:128971/1‑226 (MQ=255)
                        aCTATATTGTGAATGTTGATTATGAATTTAATAAACATGTAATTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGc                                                                                                                                                                                                                   <  1:382242/243‑1 (MQ=255)
                                                aaTTTAATAAACATGTAATTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTtgaggtg                                                                                                                                                                                   <  1:68523/251‑1 (MQ=255)
                                                  tttAATAAACATGTAATTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGAtt                                                                                                                                                                                                                                   <  1:853802/201‑1 (MQ=255)
                                                           cATGTAATTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTtgaggtg                                                                                                                                                                                   >  1:196473/1‑240 (MQ=255)
                                                            aTGTAATTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTc                                                                                                                                                                                                                            >  1:587162/1‑198 (MQ=255)
                                                            aTGTAATTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATa                                                                                                                                                                       >  1:638829/1‑251 (MQ=255)
                                                             tGTAATTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGAt                                                                                                                                                                                                                                    <  1:861266/189‑1 (MQ=255)
                                                             tGTAATTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGAt                                                                                                                                                                                                                                    >  1:794339/1‑189 (MQ=255)
                                                             tGTAATTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTgaggtgaggt                                                                                                                                                                               >  1:231327/1‑242 (MQ=255)
                                                             tGTAATTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATa                                                                                                                                                                       >  1:710333/1‑250 (MQ=255)
                                                                 aTTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTtgaggtg                                                                                                                                                                                   <  1:102034/234‑1 (MQ=255)
                                                                 aTTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGa                                                                                                                                                                  >  1:308174/1‑251 (MQ=255)
                                                                 aTTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGa                                                                                                                                                                  >  1:630185/1‑251 (MQ=255)
                                                                  ttCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCTCAAAATGATACGTTGATGTGAGGTAATGAATACAAGAc                                                                                                                                                                 <  1:901848/251‑1 (MQ=255)
                                                                    ccTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTaa                                                                                                                                                                             >  1:523182/1‑237 (MQ=255)
                                                                    ccTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAAt                                                                                                                                                                        >  1:485332/1‑242 (MQ=255)
                                                                    ccTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAg                                                                                                                                                                   >  1:218038/1‑247 (MQ=255)
                                                                    ccTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTa                                                                                                                                                               >  1:472078/1‑251 (MQ=255)
                                                                          gtgtCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAAt                                                                                                                                                                                                             >  1:581853/1‑199 (MQ=255)
                                                                          gtgtCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAAtt                                                                                                                                                         >  1:898277/1‑251 (MQ=255)
                                                                            gtCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATcac                                                                                                                                                                                                      <  1:83372/204‑1 (MQ=255)
                                                                            gtCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACaa                                                                                                                                                                                                    >  1:599387/1‑206 (MQ=255)
                                                                            gtCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTaa                                                                                                                                                       >  1:735596/1‑251 (MQ=255)
                                                                              cATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTAATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGt                                                                                                                                                                                          >  1:426442/1‑214 (MQ=255)
                                                                               atatatTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGA‑‑‑TTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGt                                                                                                                                                                                          <  1:335175/210‑1 (MQ=255)
                                                                                 atatTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGAc                                                                                                                                                                 <  1:672495/236‑1 (MQ=255)
                                                                                 atatTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAAt                                                                                                                                                          <  1:348923/243‑1 (MQ=255)
                                                                                 atatTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAAc                                                                                                                                                     >  1:563068/1‑248 (MQ=255)
                                                                                 atatTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGAATTTTTCTAATTTGAGTTAATTCTCATTGAAAAGACCGATTTTAGGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTTTTATTAGGCTAAAATGAATAACAAAATGTTACGTTGAGGAGAGGTAATGact                                                                                                                                                                        >  1:683229/1‑227 (MQ=255)
                                                                                          cAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATcac                                                                                                                                                                                                      <  1:726337/190‑1 (MQ=255)
                                                                                          cAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAAt                                                                                                                                          <  1:81437/250‑1 (MQ=255)
                                                                                                      atgatAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACt                                                                                                                                                                <  1:63476/216‑1 (MQ=255)
                                                                                                        gatAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAAt                                                                                                                                                                                                             <  1:555622/169‑1 (MQ=255)
                                                                                                                             aaTATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGAt                                                                                                                                                                                                                                    <  1:285408/125‑1 (MQ=255)
                                                                                                                              atatTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAAc                                                                                                                                                     >  1:576224/1‑203 (MQ=255)
                                                                                                                               tatTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGAt                                                                                                                                                                                                                                    >  1:69108/1‑123 (MQ=255)
                                                                                                                               tatTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATcac                                                                                                                                                                                                      <  1:196272/153‑1 (MQ=255)
                                                                                                                               tatTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAAt                                                                                                                                                                        >  1:695268/1‑183 (MQ=255)
                                                                                                                               tatTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATa                                                                                                     >  1:510911/1‑250 (MQ=255)
                                                                                                                               tatTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATa                                                                                                     >  1:876983/1‑250 (MQ=255)
                                                                                                                                 tttATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATacac                                                                                                  <  1:864296/251‑1 (MQ=255)
                                                                                                                                     tGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGc                                                                                                                                       <  1:164341/210‑1 (MQ=255)
                                                                                                                                       gTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTaa                                                                                                                                                                             >  1:527750/1‑170 (MQ=255)
                                                                                                                                       gTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAAt                                                                                                                                                                        >  1:465235/1‑175 (MQ=255)
                                                                                                                                       gTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAAc                                                                                                                                                     <  1:808917/194‑1 (MQ=255)
                                                                                                                                        tGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATc                                                                                            <  1:765537/250‑1 (MQ=255)
                                                                                                                                            ggTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAAc                                                                                                                                                     <  1:131409/189‑1 (MQ=255)
                                                                                                                                              tttGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATa                                                                                      <  1:134338/250‑1 (MQ=255)
                                                                                                                                              tttGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATAc                                                                                     <  1:118314/251‑1 (MQ=255)
                                                                                                                                              tttGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTAACACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATa                                                                                      <  1:409342/250‑1 (MQ=255)
                                                                                                                                                     gtATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAg                                                                                                                                        <  1:757610/193‑1 (MQ=255)
                                                                                                                                                     gtATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATACGGGTGAt                                                                              >  1:865468/1‑251 (MQ=255)
                                                                                                                                                          tttCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGt                                                                                                                                                                                          >  1:248371/1‑138 (MQ=255)
                                                                                                                                                               aaTTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATACGGGTGATTTTTTAGAAt                                                                    <  1:874833/251‑1 (MQ=255)
                                                                                                                                                                    gAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTaa                                                                                                                                                                             >  1:38237/1‑141 (MQ=255)
                                                                                                                                                                    gAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATACGGGTGATTTTTTAGAATTaaa                                                                >  1:646947/1‑250 (MQ=255)
                                                                                                                                                                     aGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGt                                                                                                                                                                                          <  1:136409/127‑1 (MQ=255)
                                                                                                                                                                     aGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATa                                                                                      <  1:410703/227‑1 (MQ=255)
                                                                                                                                                                      gTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATa                                                                                      <  1:823691/226‑1 (MQ=255)
                                                                                                                                                                              tcATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAAt                                                                                                                                                                        <  1:132333/136‑1 (MQ=255)
                                                                                                                                                                                aTTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATACGGGTGATTTTTTAGAATTAAACCAAGTGGataat                                                   <  1:699127/251‑1 (MQ=255)
                                                                                                                                                                                 ttGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTa                                                                                                <  1:618431/205‑1 (MQ=255)
                                                                                                                                                                                             aCTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTg                                                                                                                                                                                                                                      >  1:842506/1‑59 (MQ=255)
                                                                                                                                                                                                        gTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATACGGGTGATTTTTTAGAATTAAACCAAGTGGATAATAAATTTATTTTAACGGTTAatcg                            <  1:97347‑M1/250‑5 (MQ=255)
                                                                                                                                                                                                         tCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATACGGGTGATTTTTTAGAATTAAACCAAGTGGATAATAAATTTATTTTAACGGTTAatcgag                          <  1:604822‑M1/251‑7 (MQ=255)
                                                                                                                                                                                                                   cTTATTAGGAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATACGGGTGATTTTTTAGAATTAAACCAAGTGGATAATAAATTTATTTTAACGGTTAatcgagcgattaagaa                <  1:860166‑M1/251‑17 (MQ=255)
                                                                                                                                                                                                                          ggAAAAAGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATACGGGTGAtttt                                                                           <  1:469770/185‑1 (MQ=255)
                                                                                                                                                                                                                              aaaGAAGTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAAt                                                                                                                                                          >  1:809196/1‑102 (MQ=255)
                                                                                                                                                                                                                                  aagTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATACGGGTGATTTTTTAGAATTAAACCAAGTGGATAATAAATTTATTTTAACGGTTAatcgagcgattaagaaagtggaaactgcac  <  1:549361‑M1/250‑31 (MQ=255)
                                                                                                                                                                                                                                  aagTGTTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATACGGGTGATTTTTTAGAATTAAACCAAGTGGATAATAAATTTATTTTAACGGTTAatcgagcgattaagaaagtggaaactgcac  <  1:787599‑M1/250‑31 (MQ=255)
                                                                                                                                                                                                                                      gtTTTTGGACTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATACGGGTGAtttt                                                                           <  1:164765/173‑1 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                             
CAGCGCCAAGCCATATTGAAAATCACTATATTGTGAATGTTGATTATGAATTTAATAAACATGTAATTCCTTATGTGTCATATATTCGTGCAACTGATAAAGATGATAAAATCCGTAAAAACGAAAATATTTATGGTGCAGGTTTGCGTGTATTTTTCTAATTTGAGTTAAATCTCATTGAAAAGACCGACTTTAAGTCGGTCTTTTTTTGCTTATTAGGAAAAAGAAGTGTTTTTGGGCTGTACTTGATTTTTGTTCTTATTAGGCTAAAATGTATCACAAAATGATACGTTGAGGTGAGGTAATGAATACAAGACTAGAAATTAAACAATGGGGAAATAGCAAGGCAATTCGCTTACCGAAAGATTTTATTCATACACTAAATCTTGATACGGGTGATTTTTTAGAATTAAACCAAGTGGATAATAAATTTATTTTAACGGTTATTCCTAAAAACAGCCCAAAGAAACGATTAA  >  1/1009725‑1010200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑