Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,004,216 G→A intergenic (+53642/+1949) unknown → / ← unknown tRNA‑Leu‑CAG/tRNA‑Lys‑TTT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,004,2160GA100.0% 164.0 / NA 61intergenic (+53642/+1949)unknown/unknowntRNA‑Leu‑CAG/tRNA‑Lys‑TTT
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (32/29);  total (32/29)

TTTCAATCGTGCGCCGGTTAATCTGGAAGCTGCATTAAGACAGGAACCCGCCGTGAGTGAAAATACAATTATTATTGCGCCAACAGAACCGACTCATCGGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGCACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCGTGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGTTTGCTTACGGCTCAACCAATTAAAAATGACCATTATGATTCACATAATTATTTAAGTACACATTGGGAATTAATTGATTACAAGGGAAAAG  >  1/1003971‑1004459
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                   
tttCAATCGTGCGCCGGTTAATCTGGAAGCTGCATTAAGACAGGAACCCGCCGTGAGTGAAAATACAATTATTATTGCGCCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGAt                                                                                                                                                                                                                                                 >  1:2610/1‑250 (MQ=255)
       cGTGCGCCGGTTAATTTGGAAGCTGCATTAAGACAGGAACCCGCCGTGAGTGAAAATACAATTATTATTGCGCCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAgg                                                                                                                                                                                                                                         <  1:388958/251‑1 (MQ=255)
                   aaTCTGGAAGCTGCATTAAGACAGGAACCCGCCGTGAGTGAAAATACAATTATTATTGCGCCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATAc                                                                                                                                                                                                                                  >  1:714843/1‑246 (MQ=255)
                     tCTGGAAGCTGCATTAAGACAGGAACCCGCCGTGAGTGAAAATACAATTATTATTGCGCCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAgg                                                                                                                                                                                                                                         >  1:134179/1‑237 (MQ=255)
                          aaGCTGCATAAAGACAGGAACCCGCCGTGAGTGAAAATACAATTATTATTGCGCCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATAc                                                                                                                                                                                                                                  <  1:653153/239‑1 (MQ=255)
                               gCATTAAGACAGGAACCCGCCGTGAGTGAAAATACAATTATTATTGCGCCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAgg                                                                                                                                                                                                                                         >  1:786580/1‑227 (MQ=255)
                               gCATTAAGACAGGAACCCGCCGTGAGTGAAAATACAATTATTATTGCGCCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAAtatttat                                                                                                                                                                                                                 >  1:877840/1‑251 (MQ=255)
                                    aaaaCAGAAACCCGCCGTGAGTGAAAATACAATTATTATTGCGCCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGc                                                                                                                                                                                                            <  1:805043/248‑1 (MQ=255)
                                                        gtgaAAATACAATTATTATTGCGCCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATAc                                                                                                                                                                                                                                  <  1:603061/209‑1 (MQ=255)
                                                        gtgaAAATACAATTATTATTGCGCCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCttat                                                                                                                                                                                                     >  1:726212/1‑238 (MQ=255)
                                                           aaaaTACAATTATTATTGCGCCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGAc                                                                                                                                                                                     <  1:675577/251‑1 (MQ=255)
                                                            aaaTACAATTATTATTGCGCCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACt                                                                                                                                                                                    <  1:786329/251‑1 (MQ=255)
                                                                aCAATTATTATTGCGCCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGa                                                                                                                                                                                >  1:734839/1‑251 (MQ=255)
                                                                 cAATTATTATTGCGCCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGAt                                                                                                                                                                                                                                                 >  1:590612/1‑185 (MQ=255)
                                                                 cAATTATTATTGCGCCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGa                                                                                                                                                                                >  1:314128/1‑250 (MQ=255)
                                                                          ttGCGCCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGc                                                                                                                                                                      <  1:788196/251‑1 (MQ=255)
                                                                             cgcCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGgag                                                                                                                                                                                                                                       >  1:663984/1‑183 (MQ=255)
                                                                             cgcCAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAg                                                                                                                                                                    <  1:473599/250‑1 (MQ=255)
                                                                                cAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATAc                                                                                                                                                                                                                                  <  1:533408/185‑1 (MQ=255)
                                                                                cAACAGAACCGACTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACt                                                                                                                                                                                    >  1:178543/1‑231 (MQ=255)
                                                                                           aCTCATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATAc                                                                                                                                                                                                                                  <  1:557282/174‑1 (MQ=255)
                                                                                              cATCAGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATAc                                                                                                                                                                                                                                  >  1:744642/1‑171 (MQ=255)
                                                                                                   gTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAgg                                                                                                                                                                                                                                         <  1:148544/159‑1 (MQ=255)
                                                                                                   gTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATAc                                                                                                                                                                                                                                  <  1:752071/166‑1 (MQ=255)
                                                                                                   gTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTAt                                                                                                                                                                                                                               >  1:417467/1‑169 (MQ=255)
                                                                                                   gTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGacta                                                                                                                                               >  1:658037/1‑249 (MQ=255)
                                                                                                   gTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGacta                                                                                                                                               >  1:851535/1‑249 (MQ=255)
                                                                                                    tCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACtt                                                                                                                                            <  1:859702/251‑1 (MQ=255)
                                                                                                             atTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAgg                                                                                                                                                                                                                                         <  1:545354/149‑1 (MQ=255)
                                                                                                             atTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGaaa                                                                                                                                                                                                                           <  1:468529/163‑1 (MQ=255)
                                                                                                             atTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAg                                                                                                                                                                                                 >  1:616336/1‑189 (MQ=255)
                                                                                                             atTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGactac                                                                                                                                              <  1:508172/240‑1 (MQ=255)
                                                                                                                            aTTTTACATGACGCACATTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGcct                                                                                                                     >  1:422331/1‑250 (MQ=255)
                                                                                                                                           gttttACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGAt                                                                                                                                                                                                                                                 <  1:723428/109‑1 (MQ=255)
                                                                                                                                           caTTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCt                                                                                                     <  1:64037/251‑1 (MQ=255)
                                                                                                                                           caTTTACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCt                                                                                                     <  1:308563/251‑1 (MQ=255)
                                                                                                                                           accatatttggacgggagcgagtaCGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGc                                                                                                      <  1:14763/227‑1 (MQ=255)
                                                                                                                                              ttACCACGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCg                                                                                                                        >  1:746991/1‑229 (MQ=255)
                                                                                                                                                    cGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGtt                                                                                            >  1:666489/1‑251 (MQ=255)
                                                                                                                                                    cGTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGtt                                                                                            >  1:537752/1‑251 (MQ=255)
                                                                                                                                                     gTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGc                                                                                                                                                                                                >  1:6525/1‑150 (MQ=255)
                                                                                                                                                     gTCGAGAGCAAGTACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGttt                                                                                           >  1:778995/1‑251 (MQ=255)
                                                                                                                                                                gtaCGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAgg                                                                                                                                                                                                                                         >  1:229905/3‑98 (MQ=255)
                                                                                                                                                                 taCGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGaaaa                                                                                                                                                                                                                          >  1:461146/2‑112 (MQ=255)
                                                                                                                                                                 taCGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGTTTGCTTACGGCTCa                                                                               >  1:565647/2‑251 (MQ=255)
                                                                                                                                                                             tCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGTTTGCTTACGGCTCAACCAATTaaaaa                                                                   <  1:694284/251‑1 (MQ=255)
                                                                                                                                                                                     aGTTTAATGTTAAATCAGTTACGCTCACAAATTACACCCGATCATTTTCCTGCTAGTTTTGTTCATGATCGCTAAgg                                                                                                                                                                                                                                         >  1:872479/1‑77 (MQ=255)
                                                                                                                                                                                      gTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGTTTGCTTACGGCTCAACCAATTAAAAATGACCATTa                                                          >  1:175785/1‑251 (MQ=255)
                                                                                                                                                                                                            cTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGTTTGCTTACGGCTCAACCAATTAAAAATGACCATTATGATTCACATAATTATTTAAg                                     <  1:714384/250‑1 (MQ=255)
                                                                                                                                                                                                              cacaAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGATTACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGTTTGCTTACGGCTCAACCAATTAAAAATGACCATTATGATTCACATAATTATTTAAGTa                                   >  1:843947/1‑250 (MQ=255)
                                                                                                                                                                                                              cacaAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGTTTGCTTACGGCTCAACCAATTAAAAATGACCATTATGATTCACATAATTATTTAAGTac                                  <  1:200492/251‑1 (MQ=255)
                                                                                                                                                                                                              cacaAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGTTTGCTTACGGCTCAACCAATTAAAAATGACCATTATGATTCACATAATTATTTAAGTa                                   >  1:673097/1‑250 (MQ=255)
                                                                                                                                                                                                                  aaTTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGTTTGCTTACGGCTCAAcc                                                                            <  1:519569/205‑1 (MQ=255)
                                                                                                                                                                                                                  aaTTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGTTTGCTTACGGCTCAACCAATTAAAAATGACCATTATGATTCACATAATTATTTAAGTACACAt                              <  1:173426/251‑1 (MQ=255)
                                                                                                                                                                                                                  aaTTACATCCGATCATTTTCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGTTTGCTTACGGCTCAACCAATTAAAAATGACCATTATGACTCACATAATTATTTAAGTACACAt                              >  1:1402/1‑251 (MQ=255)
                                                                                                                                                                                                                                    tCCTGTTAGTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGTTTGCTTACGGCTCAACCAATTAAAAATGACCATTATGATTCACATAATTATTTAAGTACACATTGGGAATTAATTGATTAc            <  1:554391/251‑1 (MQ=255)
                                                                                                                                                                                                                                      cTGTTAGTTTTGTTCATGATCGCTAAGGAGAATAc                                                                                                                                                                                                                                  <  1:718904/35‑1 (MQ=255)
                                                                                                                                                                                                                                            gTTTTGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGTTTGCTTACGGCTCAACCAATTAAAAATGAcc                                                              >  1:839112/1‑193 (MQ=255)
                                                                                                                                                                                                                                              tttGTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGTTTGCTTACGGCTCAACCAATTAAAAATGACCATTATGATTCACATAATTATTTAAGTACACATTGGGAATTAATTGATTACAAGGGAAAAg  <  1:213578/251‑1 (MQ=255)
                                                                                                                                                                                                                                                 gTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGAc                                                                                                                                                                                     <  1:597176/69‑1 (MQ=255)
                                                                                                                                                                                                                                                 gTTCATGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGTTTGCTTACGGCTCAACCAATTAAAAATGACCATTATGATTcac                                                  >  1:843538/1‑200 (MQ=255)
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                   
TTTCAATCGTGCGCCGGTTAATCTGGAAGCTGCATTAAGACAGGAACCCGCCGTGAGTGAAAATACAATTATTATTGCGCCAACAGAACCGACTCATCGGTCCGGTAATATTTTAGATTATGCGATTTTACATGACGCACATTTACCACGTCGAGAGCAAGCACGTGAACGTATCGGCGCAAGTTTAATGTTAAATCAGTTACGCTCACAAATTACATCCGATCATTTTCCTGTTAGTTTTGTTCGTGATCGCTAAGGAGAATACTATGAAAAAATATTTATTGAGCTTCTTATTAAGCATGATATTGACTTTGACGAGTCATGCAGAATCAAATCCTGATCCGACTACTTATCCTGATGTAGAGTTATCGCCTCCTCCACGTATTAGCTTGCGTAGTTTGCTTACGGCTCAACCAATTAAAAATGACCATTATGATTCACATAATTATTTAAGTACACATTGGGAATTAATTGATTACAAGGGAAAAG  >  1/1003971‑1004459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑