Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 975,280 T→C intergenic (+24706/+30885) unknown → / ← unknown tRNA‑Leu‑CAG/tRNA‑Lys‑TTT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1975,2800TC100.0% 228.7 / NA 80intergenic (+24706/+30885)unknown/unknowntRNA‑Leu‑CAG/tRNA‑Lys‑TTT
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (40/40);  total (40/40)

TTCTACCGCACTTAACATACCAAGCAGAATGTTTAATTCTGTTTTTTCTATCCCTGCACGGTTGTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGATTTCATAAGCGATTAATTGCACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTAAGCAACGGCTTTTTTGCCGCACTCACGCGGTTCAATAAGCGAATTCTGCAAATGGCGCAATCTTGCGCTGGTACCGATGACTAA  >  1/975038‑975523
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                   
ttCTACCGCACTTAACATACCAAGCAGAATGTTTAATTCTGTTTTTTCTATCCCTGCACGGTTGTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAg                                                                                                                                                                                                                                             <  1:536278/251‑1 (MQ=255)
 tCTACCGCACTTAACATACCAAGCAGAATGTTTAATTCTGTTTTTTCTATCCCTGCACGGTTGTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATATTTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAg                                                                                                                                                                                                                                             <  1:860333/251‑1 (MQ=255)
         aCTTAACATACCAAGCAGAATGTTTAATTCTGTTTTTTCTATCCCTGCACGGTTGTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAAtt                                                                                                                                                                                                                                    >  1:305546/1‑251 (MQ=255)
            tAACATACCAAGCAGAATGTTTAATTCTGTTTTTTCTATCCCTGCACGGTTGTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTgta                                                                                                                                                                                                                                 >  1:494641/1‑249 (MQ=255)
                aTACCAAGCAGAATGTTTAATTCTGTTTTTTCTATCCCTGCACGGTTGTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCg                                                                                                                                                                                                                              >  1:887465/1‑250 (MQ=255)
                 tACCAAGCAGAATGTTTAATTCTGTTTTTTCTATCCCTGCACGGTTGTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAg                                                                                                                                                                                                                                             <  1:136631/234‑1 (MQ=255)
                      aGCAGAATGTTTAATTCTGTTTTTTCTATCCCTGCACGGTTGTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAg                                                                                                                                                                                                                                             <  1:509124/229‑1 (MQ=255)
                              gTTTAATTCTGTTTTTTCTATCCCTGCACGGTTGTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTaa                                                                                                                                                                                                               >  1:108604/1‑251 (MQ=255)
                                 tAATTCTGTTTTTTCTATCCCTGCACGGTTGTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTg                                                                                                                                                                                                            <  1:819068/251‑1 (MQ=255)
                                     tCTGTTTTTTCTATCCCTGCACGGTTGTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGt                                                                                                                                                                                                        <  1:409338/251‑1 (MQ=255)
                                          tttttCTATCCCTGCACGGTTGTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAAt                                                                                                                                                                                                   <  1:66758/251‑1 (MQ=255)
                                                  tCCCTGCACGGTTGTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAg                                                                                                                                                                                                                                             >  1:675849/1‑201 (MQ=255)
                                                  tCCCTGCACGGTTGTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTa                                                                                                                                                                                           >  1:151160/1‑251 (MQ=255)
                                                            gTTGTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGAtt                                                                                                                                                                                                                 >  1:580288/1‑219 (MQ=255)
                                                               gTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGAt                                                                                                                                                                                                                  >  1:361663/1‑215 (MQ=255)
                                                                    aaCGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGa                                                                                                                                                                         <  1:843641/251‑1 (MQ=255)
                                                                       gTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAg                                                                                                                                                                      >  1:365868/1‑251 (MQ=255)
                                                                       gTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAg                                                                                                                                                                      >  1:156778/1‑251 (MQ=255)
                                                                       gTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAg                                                                                                                                                                      >  1:48479/1‑251 (MQ=255)
                                                                        tCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGt                                                                                                                                                                     <  1:260929/251‑1 (MQ=255)
                                                                        tCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGt                                                                                                                                                                     <  1:811479/251‑1 (MQ=255)
                                                                              ccTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTg                                                                                                                                                                                                            >  1:307772/1‑206 (MQ=255)
                                                                                 ttGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCa                                                                                                                                                                                                                      >  1:390342/1‑193 (MQ=255)
                                                                                 ttGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTgg                                                                                                                                                                   <  1:438363/244‑1 (MQ=255)
                                                                                   gCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAg                                                                                                                                                                                                                                             <  1:555745/168‑1 (MQ=255)
                                                                                   gCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCa                                                                                                                                                                                                                      <  1:468674/191‑1 (MQ=255)
                                                                                    cATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGTTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTAACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGt                                                                                                                                                          <  1:294725/250‑1 (MQ=255)
                                                                                           cccTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCa                                                                                                                                                                                                                      >  1:493720/1‑183 (MQ=255)
                                                                                               gATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAg                                                                                                                                                                                                                                             >  1:326860/1‑156 (MQ=255)
                                                                                               gATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGa                                                                                                                                                                         >  1:285355/1‑224 (MQ=255)
                                                                                               gATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAg                                                                                                                                                           <  1:442545/238‑1 (MQ=255)
                                                                                               gATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTa                                                                                                                                              >  1:226678/1‑251 (MQ=255)
                                                                                                aTTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAg                                                                                                                                             >  1:664507/1‑251 (MQ=255)
                                                                                                aTTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAg                                                                                                                                             <  1:78820/251‑1 (MQ=255)
                                                                                                 ttCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGt                                                                                                                                            >  1:59551/1‑251 (MQ=255)
                                                                                                              cAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAAttc                                                                                                                                                     >  1:229355/1‑229 (MQ=255)
                                                                                                                 cAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTcg                                                                                                                            >  1:777544/1‑251 (MQ=255)
                                                                                                                   gAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCg                                                                                                                                                                                        <  1:231814/189‑1 (MQ=255)
                                                                                                                     aCGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTgg                                                                                                                                                                   >  1:482338/1‑208 (MQ=255)
                                                                                                                     aCGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGcc                                                                                                                        <  1:218538/251‑1 (MQ=255)
                                                                                                                     aCGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATGCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGTTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTa                                                                                                                                          <  1:375651/233‑1 (MQ=255)
                                                                                                                      cGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAg                                                                                                                                                           >  1:309163/1‑215 (MQ=255)
                                                                                                                      cGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGcc                                                                                                                        >  1:74811/1‑250 (MQ=255)
                                                                                                                        aTAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTg                                                                                                                                                                                                            >  1:790724/1‑164 (MQ=255)
                                                                                                                           aaGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCa                                                                                                                                                                 >  1:491390/1‑204 (MQ=255)
                                                                                                                           aaGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAaca                                                                                                                  >  1:136432/1‑251 (MQ=255)
                                                                                                                           aaGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAaca                                                                                                                  >  1:160964/1‑251 (MQ=255)
                                                                                                                             gctgctCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCggg                                                                                                                                                                                               <  1:225347/172‑1 (MQ=255)
                                                                                                                                   ccGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTTGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGAtt                                                                                                                                                                                            >  1:734240/1‑169 (MQ=255)
                                                                                                                                   ccGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTgg                                                                                                                                                                   <  1:886995/194‑1 (MQ=255)
                                                                                                                                   ccGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCg                                                                                                          >  1:235028/1‑251 (MQ=255)
                                                                                                                                   ccGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGAGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAAt                                                                                                                                                                                   >  1:154906/1‑178 (MQ=255)
                                                                                                                                         ggCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGa                                                                                                                                                                                     >  1:523546/1‑170 (MQ=255)
                                                                                                                                          gCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGAt                                                                                                                                                                        <  1:327481/182‑1 (MQ=255)
                                                                                                                                           cTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGa                                                                                                         >  1:256970/1‑244 (MQ=255)
                                                                                                                                                   atatTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTg                                                                                                                                                                                                            <  1:263984/137‑1 (MQ=255)
                                                                                                                                                     atTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGtt                                                                                               <  1:862958/244‑1 (MQ=255)
                                                                                                                                                      ttCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGt                                                                                       >  1:215774/1‑251 (MQ=255)
                                                                                                                                                        cTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTaa                                                                                     <  1:701889/251‑1 (MQ=255)
                                                                                                                                                             tcctccATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTAAGCAAc                                                                                <  1:200797/251‑1 (MQ=255)
                                                                                                                                                               ctccATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTAAGCAACgg                                                                              >  1:251441/1‑251 (MQ=255)
                                                                                                                                                                          ggTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGAtt                                                                                                                                                                                                                 <  1:35601/109‑1 (MQ=255)
                                                                                                                                                                                   tCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTAAGCAACGGCTTTTTTGCCGCACTCAcgc                                                          <  1:209032/251‑1 (MQ=255)
                                                                                                                                                                                   tCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTAAGCAACGGCTTTTTTGCCGCACTCAcgc                                                          <  1:586331/251‑1 (MQ=255)
                                                                                                                                                                                              cGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTAAGCAACGGCTTTTTTGCCGCACTCACGCGGTTCAATaa                                                <  1:121071/250‑1 (MQ=255)
                                                                                                                                                                                                   a‑tTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTAAGCAACGGCTTTTTTGCCGCACTCACGCGGTTCAAt                                                  <  1:472653/243‑1 (MQ=255)
                                                                                                                                                                                                   a‑tTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTAAGCAACGGCTTTTTTGCCGCACTCACGCGGTTCAATAAGCGAAt                                          <  1:642980/251‑1 (MQ=255)
                                                                                                                                                                                                           gAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAAttc                                                                                                                                                     <  1:640755/137‑1 (MQ=255)
                                                                                                                                                                                                              ggTGATGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTg                                                                                                                                                                                                            <  1:95617/79‑1 (MQ=255)
                                                                                                                                                                                                              ggTGATGCAATCGCTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTAAGCAACGGCTTTTTTGCCGCACTCACGCGGTTCAATAAGCGAATTCTGCAAATg                                >  1:236391/1‑251 (MQ=255)
                                                                                                                                                                                                                tGATGCAAACGTTTGAGTAAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGGCGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGGTTGTTGCGTAAGCAACGGCTTTTTTGCCGCACTCACGCGGTTCAATAAGCGAATTCTGCAAATgg                               <  1:487010/250‑1 (MQ=255)
                                                                                                                                                                                                                  aTGCAATCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTAAGCAACGGCTTTTTTGCCGCACTCACGCGGTTCAATAAg                                               >  1:106171/1‑232 (MQ=255)
                                                                                                                                                                                                                       aTCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTAAGCAACGGCTTTTTTGCCGCACTCACGCGGTTCAATAAGCGAATTCTGCAAATGGCGCAATCt                       <  1:753461/251‑1 (MQ=255)
                                                                                                                                                                                                                       aTCGTTTGAGTCAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTAAGCAACGGCTTTTTTGCCGCACTCACGCGGTTCAATAAGCGAATTCTGCAAATGGCGCAATCt                       <  1:521811/251‑1 (MQ=255)
                                                                                                                                                                                                                                  cAAATATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGt                                                                                                                                                                     <  1:35366/98‑1 (MQ=255)
                                                                                                                                                                                                                                   aaaTATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTAAGCAACGGCTTTTTTGCCGCACTCACGCGGTTCAATAAGCGAATTCTGCAAATGGCGCAATCTTgcgc                  <  1:284090/244‑1 (MQ=255)
                                                                                                                                                                                                                                    aaTATGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAAttc                                                                                                                                                     >  1:418005/1‑112 (MQ=255)
                                                                                                                                                                                                                                      tatGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTAAGCAACGGCTTTTTTGCCGCACTCACGCGGTTCAATAAGCGAATTCTGCAAATGGCGCAATCTTGCGCTGGTACCGAt        <  1:19088/251‑1 (MQ=255)
                                                                                                                                                                                                                                       atGCCATTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCATAAGCAACGGCTTTTTTGCCGCACTCACGCGGTTCAATAAGCGAATTCTGCAAATGGCGCAATCTTGCGCTGGTACCGATg       >  1:436400/1‑251 (MQ=255)
                                                                                                                                                                                                                                            aTTCTGACTTCATAAGCGATTAATTGTACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTAAGCAACGGCTTTTTTGCCGCACTCACGCGGTTCAATAAGCGAATTCTGCAAATGGCGCAATCTTGCGCTGGTACCGATGACTaa  >  1:89857/1‑251 (MQ=255)
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                   
TTCTACCGCACTTAACATACCAAGCAGAATGTTTAATTCTGTTTTTTCTATCCCTGCACGGTTGTATAAACGTCTTAGCCTTTGCATAACGCCCTGATTCTGAATGAACCCAACAGAACGATAAAGCTGCTCCGTATGGCTAAAAAAATATTCTAATTCCTCCATCTGCGGGTAAATATTCGCGTTATTGCGGATA‑TTTTGGGAAGGTGATGCAATCGTTTGAGTCAAATATGCCATTCTGATTTCATAAGCGATTAATTGCACCGCCATGGCAAGATTAAGTGAGGTATAATCGGGATTAGCGGGAATAGTCACATGATAGTGGCATTTGAGTAATTCTTCATTAGTTAAGCCGACGCGTTCGCGCCCGAACACAATGGCGACTTTCCCGTTTGTTGCGTAAGCAACGGCTTTTTTGCCGCACTCACGCGGTTCAATAAGCGAATTCTGCAAATGGCGCAATCTTGCGCTGGTACCGATGACTAA  >  1/975038‑975523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑