Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 848,932 T→C intergenic (‑28255/+649) unknown ← / ← unknown tRNA‑Thr‑TGT/tRNA‑Met‑CAT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1848,9320TC100.0% 194.2 / NA 71intergenic (‑28255/+649)unknown/unknowntRNA‑Thr‑TGT/tRNA‑Met‑CAT
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (36/35);  total (36/35)

TCCTCCTCAACAACGTCAATTGAATATCCTTGCCGACGTCACCTTCTTTGGTCGGGATTTCGGTGTGCTTGTGCTGTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACATACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGACAAGCCGAATGAAAAGGGTTATTTCCCTTATAAACACCATAATGTCAGAAG  >  1/848696‑849176
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                     
tcctccTCAACAACGTCAATTGAATATCCTTGCCGACGTCACCTTCTTTGGTCGGGATTTCGGTGTGCTTGTGCTGTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAAtgt                                                                                                                                                                                                                                         <  1:243642/251‑1 (MQ=255)
    cctcAACAACGTCAATTGAATATCCTTGCCGACGTCACCTTCTTTGGTCGGGATTTCGGTGTGCTTGTGCTGTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAAtg                                                                                                                                                                                                                                          >  1:28309/1‑246 (MQ=255)
               tCAATTGAATATCCTTGCCGACGTCACCTTCTTTGGTCGGGATTTCGGTGTGCTTGTGCTGTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATg                                                                                                                                                                                                                           <  1:237740/250‑1 (MQ=255)
                     gAATATCCTTGCCGACGTCACCTTCTTTGGTCGGGATTTCGGTGTGCTTGTGCTGTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCaa                                                                                                                                                                                                                    >  1:634426/1‑251 (MQ=255)
                     gAATATCCTTGCCGACGTCACCTTCTTTGGTCGGGATTTCGGTGTGCTTGTGCTGTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCaa                                                                                                                                                                                                                    >  1:172931/1‑251 (MQ=255)
                      aaTATCCTTGCCGACGTCACCTTCTTTGGTCGGGATTTCGGTGTGCTTGTGCTGTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAAt                                                                                                                                                                                                                   <  1:687564/251‑1 (MQ=255)
                             ttGCCGACGTCACCTTCTTTGGTCGGGATTTCGGTGTGCTTGTGCTGTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATg                                                                                                                                                                                                            <  1:147463/251‑1 (MQ=255)
                                ccGACGTCACCTTCTTTGGTCGGGATTTCGGTGTGCTTGTGCTGTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAg                                                                                                                                                                                                          <  1:171381/250‑1 (MQ=255)
                                                      ggATTTCGGTGTGCTTGTGCTGTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCat                                                                                                                                                                                                                              <  1:425930/208‑1 (MQ=255)
                                                      ggATTTCGGTGTGCTTGTGCTGTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATgg                                                                                                                                                                                                                          <  1:198127/212‑1 (MQ=255)
                                                                 tgcttgtgctGTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCa                                                                                                                                                                                                              <  1:525393/213‑1 (MQ=255)
                                                                 tgcttgtgctGTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCG‑AAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCata                                                                                                                                                                                                                             >  1:351150/1‑197 (MQ=255)
                                                                           gTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAAtg                                                                                                                                                                                                                                          <  1:852013/175‑1 (MQ=255)
                                                                           gTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAg                                                                                                                                                                                                          >  1:63609/1‑207 (MQ=255)
                                                                           gTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGGAAGCCTTaa                                                                                                                                                              >  1:829391/1‑251 (MQ=255)
                                                                                aTTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGATATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAgg                                                                                                                                                           <  1:418905/249‑1 (MQ=255)
                                                                                aTTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAgg                                                                                                                                                           <  1:182390/249‑1 (MQ=255)
                                                                                aTTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAgg                                                                                                                                                           <  1:613904/249‑1 (MQ=255)
                                                                                            gAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGc                                                                                                                                                                                                       <  1:619870/193‑1 (MQ=255)
                                                                                               aaGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGACACAAATGTGCTAATTTCATATAGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑ATCGTCAGGACACtt                                                                                                                                         >  1:432667/1‑251 (MQ=255)
                                                                                                   gATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAAtt                                                                                                                                                                                                                                  >  1:496651/1‑159 (MQ=255)
                                                                                                    aTTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTaaaa                                                                                                                                     <  1:286778/250‑1 (MQ=255)
                                                                                                    aTTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCCTAAAGGTA‑CTCGTCAGGaa                                                                                                                                             >  1:283260/1‑241 (MQ=255)
                                                                                                         tCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAgg                                                                                                                                                           <  1:386666/224‑1 (MQ=255)
                                                                                                                aTCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAAAAACCATaaaa                                                                                                                        >  1:540383/1‑251 (MQ=255)
                                                                                                                 tCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATaaaaa                                                                                                                       <  1:327290/251‑1 (MQ=255)
                                                                                                                  cGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAg                                                                                                                                                            <  1:217346/214‑1 (MQ=255)
                                                                                                                                        tattatAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAAtg                                                                                                                                                                                                                                          >  1:87562/1‑114 (MQ=255)
                                                                                                                                        tattatAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGGAAGCCTTAAAGGGA‑CTCGTCAGGACACTTAAAAAATAAACATAAAAATGACTTTTATGTCCGGCTCTAtt                                                                                                >  1:455971/1‑251 (MQ=255)
                                                                                                                                          ttatAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGGAAACCTTAAAGGGA‑ATCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCCCTAtttt                                                                                              >  1:792084/1‑250 (MQ=255)
                                                                                                                                            ataAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCg                                                                                                                                                                                                 <  1:832405/151‑1 (MQ=255)
                                                                                                                                                    gCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTTTGGTATCGGa                                                                                    >  1:793736/1‑251 (MQ=255)
                                                                                                                                                              ggCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑c                                                                                                                                                       <  1:48840/174‑1 (MQ=255)
                                                                                                                                                              ggCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAACCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCaaa                                                                           >  1:658170/1‑250 (MQ=255)
                                                                                                                                                               gCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACGGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAGAAACTTAAAAGGA‑ATCATCAGGACACTTAAAAAAAAATCATAAAAATGGTTTTTATATCCGGCTCAATATCTGGATTCGGAATCATCAAACg                                                                         >  1:190965/1‑251 (MQ=255)
                                                                                                                                                               gCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGGA‑CTCGTCAGGACACTTAAAAAATAACCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACg                                                                         >  1:316208/1‑251 (MQ=255)
                                                                                                                                                                    gagaAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAGTCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGGA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTTTgg                                                                                           >  1:144227/1‑228 (MQ=255)
                                                                                                                                                                    gagaAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCCGGACACTTAAAAAATAACCATAAAAATGACTTTTATg                                                                                                            >  1:846676/1‑211 (MQ=255)
                                                                                                                                                                    gagaAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGGA‑CTCGTCAGGACACTTAAAAAATAACCATAAAAATGACTTTTTTTTCCGGCTCTATTTTTgg                                                                                           >  1:453165/1‑228 (MQ=255)
                                                                                                                                                                     agaAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGtaataa                                                                                                                                                                                           >  1:502047/1‑132 (MQ=255)
                                                                                                                                                                      gaAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTAt                                                                                        <  1:174358/229‑1 (MQ=255)
                                                                                                                                                                       aaaaaGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGAc                                                                 <  1:135397/251‑1 (MQ=255)
                                                                                                                                                                           aGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCg                                                                                      <  1:174179/226‑1 (MQ=255)
                                                                                                                                                                            ggTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGGA‑CTCGTCAGGACACTTAAAAAAAAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGaaa                                                            >  1:122831/1‑250 (MQ=255)
                                                                                                                                                                                          aTTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGGAAGCCTTAAAGGGA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGACAAGCCg                                              >  1:216103/1‑251 (MQ=255)
                                                                                                                                                                                          aTTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGac                                                                                                                                             <  1:549215/156‑1 (MQ=255)
                                                                                                                                                                                          aTTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGGA‑CTCGTCAGGACACTTaaaaaa                                                                                                                                   >  1:762229/1‑166 (MQ=255)
                                                                                                                                                                                             gATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGGAAGCCTTAAAGGGA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGACAAGCCGAAt                                           >  1:683570/1‑251 (MQ=255)
                                                                                                                                                                                                           gTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGGTTTTGACGGAACGCTCGGACAAGCCGAATGAAAAAGGGTAttt                             >  1:858657/1‑251 (MQ=255)
                                                                                                                                                                                                           gTAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAAAGACTTTTATTTCCGGCTCTATTTTTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGACAAGCCGAATGAAAAGGGGTAttt                             >  1:632986/1‑251 (MQ=255)
                                                                                                                                                                                                            tAGACGGGGAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGACAAGCCGAATGAAAAGGGTTAttt                             <  1:256093/250‑1 (MQ=255)
                                                                                                                                                                                                                    gAGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCCTAAAg                                                                                                                                                            >  1:168350/1‑116 (MQ=255)
                                                                                                                                                                                                                     aGTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTCTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGACAAGCCGAATGAAAAGGGTTATTTCCCTTATaa                    <  1:66842/250‑1 (MQ=255)
                                                                                                                                                                                                                      gTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGTCATAAAGGAAGATGCTCA‑GACACCTAAAAAATATACATAAAAACGACTTTTATGTCCGGCTCTCTTTGTGGGATCGGAAACATCAAAAGCTTTTGACCGAACGCTCGGACAAGCCGAATGAAAAAGGGTATTTc                            >  1:136606/1‑241 (MQ=255)
                                                                                                                                                                                                                      gTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑Ct                                                                                                                                                      <  1:329354/119‑1 (MQ=255)
                                                                                                                                                                                                                      gTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGGA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTTTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGGCAAGCCGAATGAAAAAGGGTATTTCCCTTATaaaa                  >  1:218289/1‑250 (MQ=255)
                                                                                                                                                                                                                      gTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAACCTTAAAGGGA‑CTCGTCAGGACACTTAAAAAATAACCATAAAAAAGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCCCGGACAAACCGAATGAAAAGGGGTATTTTCCTTATaaaa                  >  1:243802/1‑250 (MQ=255)
                                                                                                                                                                                                                      gTATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAACCTTAAAGGGA‑CTCGTCAGGACACTTAAAAAAAAGCCATAAAAAAGACTTTTATGTCCGGCTCTATTTGTGGGATCGGAAACATCAAACGTTTTTGACGGAACGCTCGGGCAAGCCGAATGAAAAGGGGTATTTCCCTTATaaaa                  >  1:767624/1‑250 (MQ=255)
                                                                                                                                                                                                                       tATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGACAAGCCGAATGAAAAGGGTTATTTCCCTTATAAac                  <  1:52987/250‑1 (MQ=255)
                                                                                                                                                                                                                       tATTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGACAAGCCGAATGAAAAGGGTTATTTCCCTTATAAac                  <  1:758434/250‑1 (MQ=255)
                                                                                                                                                                                                                        aTTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAACCTTAAAGGGA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTTACGGAACGCTCGGGCAAGCCGAATGAAAAAGGTTATTTCCCTTATaaaaa                 >  1:806881/1‑248 (MQ=255)
                                                                                                                                                                                                                        aTTAAAGGATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCAGTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTGATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGACAAGCCGAATGAAAAGGGTTATTTCCCTTATAAacac                <  1:452358/251‑1 (MQ=255)
                                                                                                                                                                                                                               gATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGGAAGCCTTTAAGGAA‑CTCGTCCGGACACTTAAAAAAAAGCCATAAAAATGAATTTTATGTCCGGCTCTTTTTGTGGGAACGGAATTATTAAACGTTTTTGACGGAAAGCTCGGACAAGCCGAATGAAAAGGGGTATTTCCCTTATAAAAAACATAATg         >  1:241426/1‑251 (MQ=255)
                                                                                                                                                                                                                               gATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAAAAGCCATAAAAAAGACTTTTATGTCCGGCTCTAttt                                                                                               >  1:863602/1‑165 (MQ=255)
                                                                                                                                                                                                                               gATTTGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCACCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGACAAGCCGAATGAAAAGGGTTATTTCCCTTATAAac                  <  1:511248/242‑1 (MQ=255)
                                                                                                                                                                                                                                 tttGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGACAAGCCGAATGAAAAGGGTTATTTCCCTTATAAACACCATAATGTc       <  1:107368/251‑1 (MQ=255)
                                                                                                                                                                                                                                  ttGTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGACAAGCCGAATGAAAAGGGTTATTTCCCTTATAAACACCATAATGTCa      <  1:101893/251‑1 (MQ=255)
                                                                                                                                                                                                                                    gTTCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGGAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGGCAAGCCGAATGAAAAGGGTTATTTCCCTTATAAAAACCATAATGTCAGa    >  1:279099/1‑251 (MQ=255)
                                                                                                                                                                                                                                      tCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGACAAGCCGAATGAAAAGGGTTATTTCCCTTATAAACACCATAATGTCAGAAg  <  1:770587/251‑1 (MQ=255)
                                                                                                                                                                                                                                      tCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGACAAGCCGAATGAAAAGGGTTATTTCCCTTATAAACACCATAATGTCAGAAg  <  1:780395/251‑1 (MQ=255)
                                                                                                                                                                                                                                      tCAACACACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGACAAGCCGAATGAAAAGGGTTATTTCCCTTATAAACACCATAATGTCAGAAg  <  1:417327/251‑1 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                     
TCCTCCTCAACAACGTCAATTGAATATCCTTGCCGACGTCACCTTCTTTGGTCGGGATTTCGGTGTGCTTGTGCTGTTAGATTCGTTGTCGGGAAAAGTGATTTATCACCAAATCGTGAAAACCGAAAAAGACATTTATTATAAAATGGCATTTAATCGGCTAAGAGAAAAAGGTTATGTTATTCAATTGATTACCTGCGACGGTAGACGGGGAGTATTAAAGGATTTGTTCAACATACCGATACAAATGTGCTAATTTCATATGGTAGCAATCGCCATGAGGGCATTGCGTAATAAGCATCAATCTGAGGCGGGGAAAGCCTTAAAGGTA‑CTCGTCAGGACACTTAAAAAATAGCCATAAAAATGACTTTTATGTCCGGCTCTATTTGTGGTATCGGAATCATCAAACGTTTTTGACGGAACGCTCGGACAAGCCGAATGAAAAGGGTTATTTCCCTTATAAACACCATAATGTCAGAAG  >  1/848696‑849176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑