| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,275,683 | 0 | T | G | 57.4% | 19.5 / 55.7 | 54 | intergenic (+116103/+145254) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base T (7/16); new base G (31/0); total (38/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.16e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.23e-07 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGGCAACCGCCGTACGCAACGCACCAAGGGCTTTGTCCGACATGGAACGTAGCTCATCGGCGGATAAATATGCCAATTCACGACGATTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGTTTTTACTGTTGAAAGAACTTTGCAATTGAATCAACACTTGATTGTATTGTGCATATTGCGCTTGAACCTGACGCAATTGCTCGCGCTGTGTTTCG > 1/1275443‑1275930 | cggaaaCCGCCGTACGCAACGCACCAAGGGCTTTGTCCGACATGGAACGTAGCTCATCGGCGGATAAATATGCCAATTCACGACGATTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGttt < 1:250410/246‑1 (MQ=255) cgTACGCAACGCACCAAGGGCTTTGTCCGACATGGAACGTAGCTCATCGGCGGATAAATATGCCAATTCACGACGATTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAg < 1:278927/251‑1 (MQ=255) acgcaacgcaCCAAGGGCTTTGTCCGACATGGAACGTAGCTCATCGGCGGATAAATATGCCAATTCACGACGATTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAAc < 1:793042/251‑1 (MQ=255) caacgcaCCAAGGGCTTTGTCCGACATGGAACGTAGCTCATCGGCGGATAAATATGCCAATTCACGACGATTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGc < 1:111261/251‑1 (MQ=255) acgcaCCAAGGGCTTTGTCCGACATGGAACGTAGCTCATCGGCGGATAAATATGCCAATTCACGACGATTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCAc < 1:893588/251‑1 (MQ=255) caCCAAGGGCTTTGTCCGACATGGAACGTAGCTCATCGGCGGATAAATATGCCAATTCACGACGATTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGa < 1:478955/251‑1 (MQ=255) aCATGGAACGTAGCTCATCGGCGGATAAATATGCCAATTCACGACGATTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTTCGCTTTGCTTTCAATGAGGGGGGGGTGTTTTTTCATTTAAGAAAGGCACTGACgctggctcttttacaca > 1:358667/1‑235 (MQ=255) aCATGGAACGTAGCTCATCGGCGGATAAATATGCCAATTCACGACGATTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGATTTTTCCCCTT‑GCTTTTTATGAGGGGGGGGTGTTTTTTAATTTAAGAAAGGGACTGACGGTTAgggggaaggtgt > 1:88699/1‑240 (MQ=255) cATGGAACGTAGCTCATCGGCGGATAAATATGCCAATTCACGACGATTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACAACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTTCGCTTCGCTTTTTATGAGGGGGGGTTGTTTTTTAATGTAAAAAAGGCCCCGACGATTAAT‑GGGAAgatggt > 1:472357/1‑246 (MQ=255) gAACGTAGCTCATCGGCGGATAAATATGCCAATTCACGACGATTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGAt < 1:885206/250‑1 (MQ=255) tAGCTCATCGGCGGATAAATATGCCAATTCACGACGATTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTTCGCCTCGCTTTTCATTAGGGGGGGGTGTTTTTTAATGTAAGAACGGCACTGACGATTAGTGGGAAAGtttttgtaaaac > 1:91668/1‑244 (MQ=255) tGCCAATTCACGACGATTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCAc < 1:643798/251‑1 (MQ=255) ttCACGACGATTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTTCGCTTCGCTTTCAATGAGGGGGAGTTGTTTTTTAATGTAAGAAAGGCACTGACGATTAGT‑GGAAAGGTGTTGATACAACTCATCCCGACGGGGTTTTTCACGgtctt > 1:120886/1‑251 (MQ=255) aTTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGGGGGTTGTTTTTTAATGTAAGAACGGCACTGACGATTTGT‑GGGAAGTTGTTGATAc > 1:870968/1‑211 (MQ=255) aTTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTTCGCTTCGCTTTCAATGAGGGGGAGGTGTTTTTTAATGTAAGAACGGCACTGACCATTAGT‑GGAAAGTTGTTGATACAACTCATCCCCACGGATTTTTTCACGTTCTTCCGCGCCtt > 1:663477/1‑251 (MQ=255) tttttCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTTCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTTCACGTTCTTCCGCGCCTTCGTCGGCa > 1:397635/1‑250 (MQ=255) ttCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTTCGCTTCGCTTTCAATGAGGGGGGGTTGTTTTTCAATGTAAGAACGGCACCGACGATTAGT‑GGGAAGTTGTTGATACAACTCATCCCGACGGATTTTTTCACGGTCTTCCGCGCCTTCGTCGGCACGTa > 1:109316/1‑251 (MQ=255) caTCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTCCGCTTCGCTTTTAATGAGGGGGAGGTGTTTTTCAATGTAAGAACGGCACTGACg > 1:461875/1‑172 (MQ=255) aGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGGGAGTTGTTTTTCAATGTAAGAAAGGCACTGACGATTAGT‑GGAAAAGTGTTGATACAACTCATCCCGAAGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAAtt > 1:533662/1‑251 (MQ=255) gAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTTCGCTTCGCTTTCCATGAGGGGGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGGAAGTTGTTGATACAACTCATCCCGACGGATTTTTTCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAAttt > 1:69552/1‑250 (MQ=255) gaTAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTTCGCTTCGCTTTCAATAAGGGGGAGGTGTTTTTTAATGTAAGAACGGCACCGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTTCACGTTCTTCCGCGCCTTCGGCGGCACGGACACCCAATTCGCCGAttt > 1:412955/1‑250 (MQ=255) aCGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTTCGCTTCGCTTTCAATGAGGGGGGGTTGTTTTTTAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAAATCATCCCGACGGATTTTTGCACGGTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGc > 1:541643/1‑250 (MQ=255) aCGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCCCTTCGCTTTTCATGAGGGGGGGTTGTTTTTTAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTTTTGATACAACTCATCCCGACGGGTTTTTTCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGc > 1:781744/1‑250 (MQ=255) aCGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGGGGGGTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTTATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCCCGTACACCCAATTCGCCGATTTCCTGc > 1:646441/1‑250 (MQ=255) gcaCCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCAt < 1:631260/247‑1 (MQ=255) accacGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTCCGCCTCGCTTTCAATGAGGGGGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAAATCATCCCGACGGGTTTTTGCACGTTCTTCCGCGCCCTCGTCGGCACGGACACCCAATTTCCCGATTTCCTGCATTAAtt > 1:197817/1‑250 (MQ=255) acGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTTCGCTTCGCTTTTCATGAGGGGGGGGTGTTTTTTAATGTAAGAACGGCACTGACGGTTAGT‑GGGAAGTTGTTGGTTCAACTCATCCCCACGGGTTTTTTCACGGTCTTCCGCGCCTTCGTCGGCCCGTACACCCAATTTCCCGGTTTCCTTCATTTAtttctt > 1:826590/1‑247 (MQ=255) cgcgccAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑ATTTCCGCTTCGCCTTTAATGAGGGGGGGGTGTTTTTCAATGTAAGAACGGCACTGACGGGTTGT‑GGGAAGTTGTTGTTACAACTCATCCCGACGGGTTTTTGCCCGTTCTTTCGCCCCCTCGTCGGCACGGACACCCAATTCGCCGATTTCCTGCCTTAATTCCTg > 1:406575/5‑250 (MQ=255) gCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTCCGCTTCGCTTTTCATGAGGGGGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATc > 1:253193/1‑165 (MQ=255) ttttAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGttt < 1:272884/251‑1 (MQ=255) ccgTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTTCGCTTCGCCTTCTATGAGGGGGAGTTGTTTTTTAATGTAAAAAAGGCACTGAAGATTAGT‑GGAAAGATGTTGATACAACTCATCCCGACGGGTTTTTTCACGTTTTTTCGCGCCCTCGTCGGCCCGTACACCCCATTCGCCGATTTTCTGCCTTAATTCCTgaccggcgaacaaaaaattcgca > 1:45187/1‑229 (MQ=255) gTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTTCGCTTCGCTTTCCATGAGGGGGGGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGGAAGTTTTTTATACAACTCATCCCGACGGGTTTTTTCACGTTCTTTCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTTATTCCTgaccggcgaacaacaaattcgcctt > 1:520667/1‑227 (MQ=255) gTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑ATTTCCGCTTTGCCTTTAATGAGGGGGAGTTGGTTTTCAAAGTAAAAACCGCACCGACGATTAGT‑GGAAAGTTGTTGTTATAACTCATCCCGCCCGATTTTTGCACGGTTTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTTCTGCCTTAATTCCTgacccgcgaacaacaaatttgcatt > 1:609410/1‑227 (MQ=255) cAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTTCGCTTCGCTTTCAATGAGGGGGAGTTGTTTTTTAATGTAAGAACGGCACTGACGATTAGG‑GGAAAGGTGTTGATAAAACTCATCCCGACGGATTTTTGCACGGTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTTCTGCATTAATTCCTGCAACATTTTGTTTTTTCTGTTGAAAGaaa > 1:691604/1‑250 (MQ=255) gggTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTTCGCTTCGCTTTCAATGAGGGGGAGTTGTTTTTCAATTTAAGAAAGGCACTGAAGATTAGT‑GGGAAGATGTTGATACAAATCATCCCGACGGGTTTTTGCACGGTCTTCCGCGCCTTCGTCGGCACGTACCACCAATTTGCCGATTTCCTGCATTAATTTCTGCAACATTTGGGTTTTACTGTTGTAAAAACttttccattta > 1:18172/1‑243 (MQ=255) gggTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGGGGGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACAt > 1:663901/1‑217 (MQ=255) gTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCCCCTCGCTTTCAATGAGGGGGGGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAAATCATCCCGCCGGATTTTTGCACGTTCTTCCCCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCCACATTTGGGTTTTATTGTTGAAAGAACTTTGCAATTGAAt > 1:180029/1‑251 (MQ=255) ttGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGGGGTGTTTTTTAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGGTGTTGATACAACTCATCCCGACGGGTTTTTTCACGt > 1:132017/1‑147 (MQ=255) ttGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGGGAGGTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGGTGTTGATACAACTCATCCCGACGGGTTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTacac > 1:546483/1‑175 (MQ=255) ttGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGGAAGA‑TTTTTCGCTTCGCTTTCAATGAGGGGGAGTTGTTTTTTAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGGTCTTCCGCGCCTTCGTCGGCACGTACAccc > 1:838664/1‑177 (MQ=255) ccGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGTTTTTACTGTTGAAAGAACTTTGCAATTGAATCAACACTTGat < 1:382498/251‑1 (MQ=255) ccGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGTTTTTACTGTTGAAAGAACTTTGCAATTGAATCAACACTTGattgtat < 1:506034/251‑1 (MQ=255) ccGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGTTTTTACTGTTGAAAGAACTTTGCAATTGAATCAACACTTGattgtat < 1:110348/251‑1 (MQ=255) cTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGGGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGGAAGTTGTTGATACAACTCATCCCGACGGATTTTTTCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGTTTTTACTGTTGAAAGAACTTTGCaaagcgatccggaaaattatgaaca > 1:228652/1‑226 (MQ=255) cTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGGGAGGTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGTTTTTACTGTTGAAAGAACTTTGCAATTGAATCAACACTTGattgtat > 1:560059/1‑248 (MQ=255) cTTTACGAATGCGGCGGGGAAGA‑TTTTCCGCTTCGCTTTCCATGAGGGGGAGTTGTTTTTCCATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTTCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGTTTTTTCTGTTGAAAGAACTTTGCAATTGAATCAACACTTGattgtattgt > 1:74361/1‑251 (MQ=255) aTGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGTTTTTACTGTTGAAAGAACTTTGCAATTGAATCAACACTTGATTGTATTGTGCATATTg < 1:761855/251‑1 (MQ=255) aTGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGTTTTTACTGTTGAAAGAACTTTGCAATTGAATCAACACTTGATTGTATTGTGCATATTg < 1:555435/251‑1 (MQ=255) cttcgcttTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGTTTTTACTGTTGAAAGAACTTTGCAATTGAATCAACACTTGATTGTATTGTGCATATTGCGCTTGAACCTGACGCAATTg < 1:859198/250‑1 (MQ=255) cttTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGTTTTTACTGTTGAAAGAACTTTGCAATTGAATCAACACTTGATTGTATTGTGCATATTGCGCTTGAACCTGACGCAATTGCTcgcg > 1:125685/1‑251 (MQ=255) ttCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGTTTTTACTGTTGAAAGAACTTTGCAATTGAATCAACACTTGATTGTATTGTGCATATTGCGCTTGAACCTGACGCAATTGCTcgcg > 1:84070/1‑249 (MQ=255) cAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGTTTTTACTGTTGAAAGAACTTTGCAATTGAATCAACACTTGATTGTATTGTGCATATTg > 1:576057/1‑220 (MQ=255) gggTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGTTTTTACTGTTGAAAGAACTTTGCAATTGAATCAACACTTGATTGTATTGTGCATATTg > 1:724601/1‑214 (MQ=255) gggTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGTTTTTACTGTTGAAAGAACTTTGCAATTGAATCAACACTTGATTGTATTGTGCATATTGCGCTTGAACCTGACGCAATTGCTCGCGCTGTGTTTcg > 1:846350/1‑251 (MQ=255) | CGGCAACCGCCGTACGCAACGCACCAAGGGCTTTGTCCGACATGGAACGTAGCTCATCGGCGGATAAATATGCCAATTCACGACGATTTAAGCGTTTTTCCACATCAGAATTGCGAGATAAACGCAGCACCACGCACCAGCTCATTTTAGCCGCCGTTACCAATTCGCGCTGGGTTTTGTAGTCCCGTTCCGCTTTACGAATGCGGCGGGTAAGA‑TTTTCCGCTTCGCTTTCAATGAGGGTGAGTTGTTTTTCAATGTAAGAACGGCACTGACGATTAGT‑GGAAAGTTGTTGATACAACTCATCCCGACGGATTTTTGCACGTTCTTCCGCGCCTTCGTCGGCACGTACACCCAATTCGCCGATTTCCTGCATTAATTCCTGCAACATTTGGTTTTTACTGTTGAAAGAACTTTGCAATTGAATCAACACTTGATTGTATTGTGCATATTGCGCTTGAACCTGACGCAATTGCTCGCGCTGTGTTTCG > 1/1275443‑1275930 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |