| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 89,439 | (A)7→8 | intergenic (–/+41695) | – / ← unknown | –/tRNA‑Ala‑GGC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 89,432 | 1 | . | A | 94.4% | 189.4 / 1.9 | 72 | intergenic (–/+41702) | –/unknown | –/tRNA‑Ala‑GGC |
| Reads supporting (aligned to +/- strand): ref base . (0/4); new base A (38/30); total (38/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.51e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATAATTTCCGTAGCTCCAGCATTCAATACGTGATCAAACGCATCAAAAAAGCGGGTGTGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGAT‑GAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑C‑‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGTTCGCCTTTGGCTTCGCCGATGAAAGACATACGC > 1/89189‑89673 | aTAATTTCCGTAGCTCCAGCATTCAATACGTGATCAAACGCATCAAAAAAGCGGGTGTGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑C‑‑aaaaaa < 1:256797/251‑1 (MQ=255) tCCGTAGCTCCAGCATTCAATACGTGATCAAACGCATCAAAAAAGCGGGTGTGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCCCG‑‑GTATTAAGGGAAAGGAGTTATAACAGC‑C‑‑aaaaaaaacgg > 1:542579/1‑246 (MQ=255) cTCCAGCATTCAATACGTGATCAAACGCATCAAAAAAGCGGGTGTGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATcc < 1:743161/250‑1 (MQ=255) cATTCAATACGTGATCAAACGCATCAAAAAAGCGGGTGTGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGAc < 1:382315/250‑1 (MQ=255) cATTCAATACGTGATCAAACGCATCAAAAAAGCGGGTGTGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGAc < 1:575110/250‑1 (MQ=255) cATTCAATACGTGATCAAACGCATCAAAAAAGCGGGTGTGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGAc < 1:180140/250‑1 (MQ=255) aTTCAATACGTGATCAAACGCATCAAAAAAGCGGGTGTGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAAAGGATTTATAACAGC‑CA‑AAAAAAA‑AGGCTTATCCATGGACaa > 1:399679/1‑251 (MQ=255) ttCAATACGTGATCAAACGCATCAAAAAAGCGGGTGTGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGGACGGATTTTTAACAAC‑CA‑AAAAAAA‑AGGCTTATCCATGGACaaa > 1:834289/1‑250 (MQ=255) ttCAATACGTGATCAAACGCATCAAAAAAGCGGGTGTGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGAc < 1:419321/248‑1 (MQ=255) aagATCAAACGCATAAAAAAAGCGGGTGTGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTAAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAAt < 1:443254/249‑1 (MQ=255) tGATCAAACGCATCAAAAAAGCGGGTGTGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAAt < 1:888040/250‑1 (MQ=255) aaaaaaGCGGGTGTGAAAGTGATTTTTTACGACCCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAacc < 1:551347/251‑1 (MQ=255) gtgtGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGATTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGGCTATACCCGCC‑‑ATATTAAGGGAAAGGATTTTTAACAGC‑CA‑AAAAAAA‑ACGCCTATCCATGGACAAGCCGTAAATTTATCGGGAAAAACCACCGCACttt > 1:842536/1‑251 (MQ=255) gtgtGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCGATATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGt < 1:16432/224‑1 (MQ=255) gtgtGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑GTATTAAGGGAACGGATTTATAAAAGC‑CA‑AAAAAAA‑AGGCTTATCCATGGa > 1:877742/1‑214 (MQ=255) gtgtGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAAGGAAAGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGc > 1:137130/1‑219 (MQ=255) gATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CAAAAAAAAA‑AGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCgg > 1:653269/1‑251 (MQ=255) tACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGGGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCtt < 1:654231/251‑1 (MQ=255) cGGAATATGCTGAAAAAGACTTTTTTGGCTCGAAAGTGGTGACTGATTTAACCGCGTTAAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATCCCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTa < 1:14532/249‑1 (MQ=255) atGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGGCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAAAAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGGAAATTCATCGGGAAAAAACACCCCACTTTTTGGTGCGGGGTTTTTTTTTTATTTTCtta > 1:692201/1‑249 (MQ=255) ctaaaaaaGTCTTTTTTGGCTCGGAAGTGGTGACTGATTTAACCGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATCCCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACt < 1:173149/248‑1 (MQ=255) aGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACCGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAAtt > 1:877556/1‑187 (MQ=255) tCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGGAAATTCATCGGGAAAAAACACCGCACTTTTTGGTGCGGGGTTTCTTTTTTATTTTCTTAACTCGCGTTTTTCTTTAAAAgtg > 1:490474/1‑251 (MQ=255) gAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑AGGCTTATCCATGGACAAGCCGTAAAtt > 1:136517/1‑171 (MQ=255) aaGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATCCCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAgtgcgg < 1:615455/250‑1 (MQ=255) gtggtgACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTTTACCCGCG‑‑ATATTTAGGGAAAGGCTTTATAACAGC‑CA‑AAAAAAA‑CCGCTTATCCATTGACAAGCCGTAAATTCATTGGGAAAAAACACCGCACTTTTTGGTGCGGTGTTTTTTTTTTTTTTTCTGAAATCGCGTTTTTTTTTTAAAgcgcggtg > 1:481062/1‑250 (MQ=255) cTGATTTAAACGCGTTCAAGAAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGtttttt < 1:784587/251‑1 (MQ=255) aTTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACCAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTTGTGCGGGGTTTCTTTTTTATTTTCTTAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGttttttttt > 1:101024/1‑248 (MQ=255) aaaCGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGgtgt < 1:556212/190‑1 (MQ=255) ttCAAGCAGCAAGCCGATGTCATTCTCGCCAATCGTATGGGGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATGCCCGCG‑‑ATATTAAGGGAGCGGATTTATAACAGC‑C‑‑AAAAAAACCGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGc < 1:731028/251‑1 (MQ=255) ttCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGtttttt < 1:214733/237‑1 (MQ=255) caacaaGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAAACACCGCACTTTTTGGTGCGGGGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGc > 1:693574/1‑249 (MQ=255) aaGCCGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGaa < 1:657239/192‑1 (MQ=255) ccGATGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGc < 1:776612/251‑1 (MQ=255) cGATGTCATTCTCGCCAATCGTATGGGGGATGGAAATCCTGGATGTGGAGGATAAAGTCTATACCCGAG‑‑ATGTGAAGGAAACGGATTTATAACACC‑C‑‑AAAAAAACCGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGcc < 1:629762/251‑1 (MQ=255) aTGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCtttt < 1:299691/174‑1 (MQ=255) tGTCATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGGGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTaa > 1:278222/1‑244 (MQ=255) cATTCTCGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATCCCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGt < 1:516551/156‑1 (MQ=255) cGCCAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATCCCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCaaa < 1:326015/251‑1 (MQ=255) ccAATCGTATGGGGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAAc < 1:831250/251‑1 (MQ=255) cAATCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACg < 1:209769/251‑1 (MQ=255) aTCGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAAACACCGCACTTTTTGGTGCGGGGTTTCTTTTTTATTTTTTGAACTCGCGTTTTTCTTTAAAAATGCGGTGCGTTTTTTCTTTAAATTTTCGCTCGCCTTTAAAGCCGTTGTCTTCAAAACgg > 1:553020/1‑249 (MQ=255) cGTATGGCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGGGCGGGGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTcc > 1:748922/1‑250 (MQ=255) gCGGATGGAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGGGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTTTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGa > 1:603403/1‑251 (MQ=255) ggATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATcgccg > 1:27410/1‑251 (MQ=255) aatCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGt > 1:485087/3‑251 (MQ=255) aGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGt > 1:485091/1‑251 (MQ=255) aGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGt > 1:346247/1‑251 (MQ=255) gTCTATCCCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCcgccgc < 1:764828/218‑1 (MQ=255) gTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGAc > 1:633382/1‑65 (MQ=255) gTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAg < 1:293982/193‑1 (MQ=255) gTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAAc > 1:891501/1‑209 (MQ=255) gTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGtt > 1:768268/1‑251 (MQ=255) ataCCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGTTCGc > 1:231859/1‑250 (MQ=255) cccGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGTTCGCCt < 1:230122/249‑1 (MQ=255) atatTAAGGGAACGGATTTATAACAGCAA‑‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAg < 1:440606/139‑1 (MQ=255) atatTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAAt < 1:833645/63‑1 (MQ=255) atatTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAAt > 1:564439/1‑162 (MQ=255) atatTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGTTCGCCTTTGGCtt > 1:366784/1‑250 (MQ=255) atatTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGTTCGCCTTTGGCtt > 1:850684/1‑250 (MQ=255) atatTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGTTCGCCTTTGGCtt > 1:840708/1‑250 (MQ=255) atatTAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGTTCGCCTTTGGCt > 1:370049/1‑249 (MQ=255) atatTAAGGGAACGGATTTATAACAGC‑A‑‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGc < 1:442538/167‑1 (MQ=255) tAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGTTCGCCTTTGGCTTCGCCg > 1:727394/1‑251 (MQ=255) tAAGGGAACGGATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGTTCGCCTTTGGCTTCGCCg > 1:702882/1‑251 (MQ=255) gATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTc < 1:314432/51‑1 (MQ=255) gATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTAt > 1:26059/1‑97 (MQ=255) gATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGc < 1:411597/154‑1 (MQ=255) gATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGTTCGCCTTTGGCTTCGCCGATGAAAGACa > 1:570326/1‑251 (MQ=255) gATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGTTCGCCTTTGGCTTCGCCGATGAAAGACa > 1:310861/1‑251 (MQ=255) gATTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGTTCGCCTTTGGCTTCGCCGATGAAAGACa > 1:506401/1‑251 (MQ=255) aTTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGTTCGCCTTTGGCTTCGCCGATGAAAGACAt > 1:137827/1‑251 (MQ=255) aTTTATAACAGC‑CA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTAAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGTTCGCCTTTGGCTTCGCCGATGAAAGACAt > 1:387460/1‑251 (MQ=255) ataACAGC‑AA‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGTTCGCCTTTGGCTTCGCCGATGAAAGACATACGc < 1:179813/251‑1 (MQ=255) | ATAATTTCCGTAGCTCCAGCATTCAATACGTGATCAAACGCATCAAAAAAGCGGGTGTGAAAGTGATTATTTACGAACCGGAATATGCTGAAAAAGACTTTTTTGGCTCGGAAGTGGTGACTGATTTAAACGCGTTCAAGCAACAAGCCGATGTCATTCTCGCCAATCGTATGGCGGAT‑GAAATCCTGGATGTGGCGGATAAAGTCTATACCCGCG‑‑ATATTAAGGGAACGGATTTATAACAGC‑C‑‑AAAAAAA‑CGGCTTATCCATGGACAAGCCGTAAATTCATCGGGAAAAACCACCGCACTTTTTGGTGCGGTGTTTCTTTTTTATTTTCTGAACTCGCGTTTTTCTTTAAAAGTGCGGTGCGTTTTTTCTTTAAATTTACGCTCGCCTTTAAAGCCGTTGTCTTCAAAACGTCCGCCGCGACGTTTGCCGCCGAAGTTATCGCCGCCTCGTTCGCCTTTGGCTTCGCCGATGAAAGACATACGC > 1/89189‑89673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |