| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,355,741 | (G)7→9 | intergenic (+196161/+65196) | unknown → / ← unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,355,734 | 1 | . | G | 84.6% | 84.9 / 12.8 | 39 | intergenic (+196154/+65203) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base . (0/6); new base G (20/13); total (20/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.32e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | 1 | 1,355,734 | 2 | . | G | 82.0% | 82.7 / 16.8 | 39 | intergenic (+196154/+65203) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base . (1/6); new base G (19/13); total (20/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.36e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTGATTGTCGTTAATACGGAAAGATAACAAGACCGCTTTTTTCAACCATTGGTGAGTCACCCATTCGCCGTCGATTTTTTCGGCAACACGATACTTGCCGCTGTCCAAGCC‑TTCAATCACCTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑A‑‑GGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTACAATCTGACGTCATCAAATAATCTTTTCACCACATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTGCGGTGAAAAATAGTTGATAAAATCATACATATAATTACGCAGGAAAGCGCCGTGTTTAAAGGCGATTTGCGTCATGCTGGCGCGGA > 1/1355487‑1355971 || ttGATTGTCGTTAATACGGAAAGATAACAAGACCGCTTTTTTCAACCATTGGTGAGTCACCCATTCGCCGTCGATTTTTTCGGCAACACGATACTTGCCGCTGTCCAAGCC‑TTCAATCACCTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑A‑‑ggg < 1:290306/251‑1 (MQ=255) tCGTTAATACGGAAAGATAACAAGACCGCTTTTTTCAACCATTGGTGAGTCACCCATTCGCCGTCGATTTTTTCGGCAACACGATACTTGCCGCTGTCCAAGCC‑TTCAATCACCTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑A‑‑ggggggggg < 1:422272/250‑3 (MQ=255) tCGTTAATACGGAAAGATAACAAGACCGCTTTTTTCAACCATTGGTGAGTCACCCATTCGCCGTCGATTTTTTCGGCAACACGATACTTGCCGCTGTCCAAGCC‑TTCAATCACCTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑A‑‑ggggggggg > 1:781560/1‑248 (MQ=255) gATAACAAGACCGCTTTTTTCAACCATTGGTGAGTCACCCATTCGCCGTCGATTTTTTCGGCAACACGATACTTGCCGCTGTCCAAGCC‑TTCAATCACCTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑A‑‑ggggggggg > 1:310267/1‑233 (MQ=255) ccGCTTTTTTCAACCATTGGTGAGTCACCCATTCGCCGTCGATTTTTTCGGCAACACGATACTTGCCGCTGTCCAAGCC‑TTCAATCACCTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAAt > 1:865650/1‑251 (MQ=255) tttttCAACCATTGGTGAGTCACCCATTCGCCGTCGATTTTTTCGGCAACACGATACTTGCCGCTGTCCAAGCC‑TTCAATCACCTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑A‑‑g > 1:67388/1‑212 (MQ=255) tttCAACCATTGGTGAGTCACCCATTCGCCGTCGATTTTTTCGGCAACACGATACTTGCCGCTGTCCAAGCC‑TTCAATCACCTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGaa > 1:887497/1‑251 (MQ=255) tgagtcccgacttggCCGTGGATTTTTGGGGCAACACAATACTTCCCACTG‑CCAAACCTTTTAATCCCCTCTACAACCACCGCATGGTTTTGTACGTAAATGGTTTTGGGTGTATTTTGATAGTGTTTTTCAAAAGTGTTAAAAAA‑AATTTTTTGTAATTTTGACTTTTTG‑ATCTTTATAAAAATGTTAAAAAAG‑‑G‑‑GGGGGGGGGGGGATGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTc < 1:709177/237‑1 (MQ=255) gTCACCCATTCGCCGTCGATTTTTTCGGCAACACGATACTTGCCGCTGTCCAAGCC‑TTCAATCACCTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAAt > 1:431511/1‑251 (MQ=255) gTCACCCATTCGCCGTCGATTTTTTCGGCAACACGATACTTGCCGCTGTCCAAGCC‑TTCAATCACCTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAAt > 1:280397/1‑251 (MQ=255) tcttttttttCGGCAACACGTTTCTTGCCTCTGTCCAAGCT‑TTAAATCCCCTCTTCACCCGCCGCACGGGTTTGTACGTCAATTTTTTTTGTTGTAATTTCAGTGCTTTTTTCAAAAGCTTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATAAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCaa < 1:263473/246‑1 (MQ=255) gTCCAAGCC‑TTCAATCACCTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑AG‑GGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACg > 1:343970/1‑224 (MQ=255) gTCCAAGCC‑TTCAATCACCTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑A‑‑ggg < 1:484694/149‑1 (MQ=255) gTCCAAGCC‑TTCAATCACCTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑A‑‑gg < 1:778101/148‑1 (MQ=255) ccAAGCC‑TTCAATCCCTTCTTCACCCGCCGCATGTGTTTGTACGTTAATTGTTTTTGTTGTAATTTCAGTGCTTTTTTCAAAAGCGTTTTAAAT‑AAGTTTTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCattat < 1:373522/251‑1 (MQ=255) aacaGCC‑TTCTATCCCCCCTCCAACCGCGGCTTGGGTTTGTACGTCAATGTTTTTTGGTGTATTTTCAGTGCGTTTTAAAAAAGCTTTTTAAAT‑AAGTTGTTGTAAATTTAACATTTTT‑CTTCCTATAGAAATGTAAGAAAAAGGG‑‑GGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCattat < 1:448571/248‑1 (MQ=255) cc‑TTCAATCACCTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCg > 1:806928/1‑251 (MQ=255) ctttCAATCCCCTCTTCAACCGCCGCACGGGTTTGTACGTAATTGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCg < 1:622811/249‑1 (MQ=255) ttcaacccccctttCAACCGCCGCACGATTTTGTTCGTAAATTTTTTTTGGTTTAATTTCAGTGCTTTTTAAAAAATCTTTTTAAAT‑AAGTTTTTGTAAATTTGACATTTTG‑CTTCCTATATCAATTTTAGAAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTg < 1:221628/239‑1 (MQ=255) ttaattctccTCTACAACCGCCGCAGTGTTTTGTACGTAAATGTTTTTTGGTGTAATTTCAGTGTTTTTTACAAAAGCTTTTTAAAT‑AAGTTGTTGTAAATTGGGCTTTTTG‑CTTCCTATATAAATGTGAGAAAAAGGG‑‑GGGGGGGGGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTg < 1:244908/243‑1 (MQ=255) ttCAATCACCTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTg > 1:536102/1‑251 (MQ=255) cccccTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATAc < 1:29933/248‑1 (MQ=255) atgtgtttaaaagaggggggTTTGTACGTGAGTGGTTTTTGGTGTATTTTAATTGCTTTTTTAAAAGGCGTTTGAAAA‑ATGGTGTTGTAAATTTGACTTTTTG‑CATACTATATAAGTAGGAGAAAAAGGG‑‑GGGGGGGGGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGc < 1:133774/232‑1 (MQ=255) ccacccgccgCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTGGTTGTAAATTTGTCATTTTG‑CTTCCTATATAAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGcc < 1:140676/247‑1 (MQ=255) ggTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGtttt > 1:770802/1‑250 (MQ=255) ttGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACg > 1:253814/1‑251 (MQ=255) tCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAg > 1:487425/1‑251 (MQ=255) atgggTTTTTGGTGTAATTGTAGTGAGTTTTTCAATAGAGTTTT‑AATAAAGTTGTTGTAATTTTGA‑TTTTTGTTTTCCTATATTAAGGTAAGTAAAAGGG‑‑GGGGGGGTGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTg < 1:328806/248‑1 (MQ=255) tAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTg > 1:398688/1‑237 (MQ=255) tttCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑A‑‑g < 1:723825/82‑1 (MQ=255) tttCAAAATCTTTTTAAAT‑AAGTTGTTTTAAATTTGTTGTTTTT‑CTTCCTATATCAATTTTAGTAAAAGGG‑‑GGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTg < 1:95225/222‑1 (MQ=255) aaaaaGCGTTTTCAAT‑AAGTTTTTGTAAATTTGACATTTTG‑CTTCCTATATAAATGTTAGAAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTGCGGTGAAAAATAGTTGATAAAATCATACatat < 1:777274/250‑1 (MQ=255) aagaaacaacAAT‑AAGTTTTTTTAAATTTTACATTTTG‑CTTCATATAGAAATGTTAGAAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTGCGGTGAAAAATAGTTGATAAAATCATACATATAAt < 1:351842/242‑1 (MQ=255) aGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTGCGGTGAAAAATAGTTGATAAAATCATACATATAAtt > 1:533749/1‑251 (MQ=255) ttttAAAT‑ATGTTGTTATAAAGTTGTCTTTTTG‑CTTCCAAAATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTGCGGTGAAAAATAGTTGATAAAATCATACATATAATTACGc < 1:292920/251‑1 (MQ=255) cAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTGCGGTGAAAAATAGTTGATAAAATcataca > 1:688084/1‑236 (MQ=255) tcaggttgttGTAATTTTGACATTTTG‑CTTCCTATATAAATGTAAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTGCGGTGAAAAATAGTTGATAAAATCATACATATAATTACGCAGGaa < 1:69374/246‑1 (MQ=255) tccaatatAAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTGCGGTGAAAAATAGTTGATAAAATCATACATATAAt < 1:421314/207‑1 (MQ=255) tCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTGCGGTGAAAAATAGTTGATAAAATCATACATATAATTa > 1:683959/1‑213 (MQ=255) tCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTGCGGTGAAAAATAGTTGATAAAATCATACATATAATTACGCAGGAAAGCGCCGTGTTTAAAGGCGATTTGCGTCAt > 1:672866/1‑251 (MQ=255) tCCTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTGCGGTGAAAAATAGTTGATAAAATCATACATATAATTACGCAGGAAAGCGCCGTGTTTAAAGGCGATTTGCGTCAt > 1:187663/1‑251 (MQ=255) ccTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTGCGGTGAAAAATAGTTGATAAAATCATACATATAATTACGCAGGAAAGCGCCGTGTTTAAAGGCGATTTGCGTCATg > 1:556314/1‑251 (MQ=255) cTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGaaaa > 1:35239/1‑65 (MQ=255) cTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTGCGGTGAAAAATAGTTGATAAAATCATACATATAATTACGCAGGAAAGCGCCGTGTTTAAAGGCGATTTGCGTCATg > 1:383449/1‑250 (MQ=255) cTATATCAATGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTGCGGTGAAAAATAGTTGATAAAATCATACATATAATTACGCAGGAAAGCGCCGTGTTTAAAGGCGATTTGCGTCATGc < 1:613909/251‑1 (MQ=255) cTATATAAATGTAAGAAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTcc < 1:290236/154‑1 (MQ=255) tGTTAGTAAAA‑‑AGGGGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTGCAATCTGACGTCATCAAATAATCTTTTCACCGCATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTGCGGTGAAAAATAGTTGATAAAATCATACATATAATTACGCAGGAAAGCGCCGTGTTTAAAGGCGATTTGCGTCATGCTGGCGCGGa > 1:642887/1‑251 (MQ=255) || TTGATTGTCGTTAATACGGAAAGATAACAAGACCGCTTTTTTCAACCATTGGTGAGTCACCCATTCGCCGTCGATTTTTTCGGCAACACGATACTTGCCGCTGTCCAAGCC‑TTCAATCACCTCTTCAACCGCCGCACGGGTTTGTACGTCAATGGTTTTTGGTGTAATTTCAGTGCGTTTTTCAAAAGCGTTTTCAAT‑AAGTTGTTGTAAATTTGACATTTTG‑CTTCCTATATCAATGTTAGTAAAA‑‑A‑‑GGGGGGGCGGG‑‑TGTTCGTCGTTGCAAATTCAATGTGCGAAAAGCCAACTTTTCAATTACAAAGTTTACAATCTGACGTCATCAAATAATCTTTTCACCACATTATTGTCGTGCATACGCTCTGCCCGTTCCACGTTTTCACGGGTTAAGTGCGGTGAAAAATAGTTGATAAAATCATACATATAATTACGCAGGAAAGCGCCGTGTTTAAAGGCGATTTGCGTCATGCTGGCGCGGA > 1/1355487‑1355971 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |