| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,645,873 | (CAAT)5→4 | intergenic (+4034/+18499) | unknown → / ← unknown | tRNA‑Gly‑GCC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,645,854 | 0 | A | . | 100.0% | 41.6 / NA | 11 | intergenic (+4015/+18521) | unknown/unknown | tRNA‑Gly‑GCC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (5/6); total (5/6) | |||||||||||
| * | 1 | 1,645,855 | 0 | A | . | 100.0% | 41.6 / NA | 11 | intergenic (+4016/+18520) | unknown/unknown | tRNA‑Gly‑GCC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (5/6); total (5/6) | |||||||||||
| * | 1 | 1,645,856 | 0 | T | . | 100.0% | 41.6 / NA | 11 | intergenic (+4017/+18519) | unknown/unknown | tRNA‑Gly‑GCC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (5/6); total (5/6) | |||||||||||
| * | 1 | 1,645,857 | 0 | C | . | 100.0% | 41.6 / NA | 11 | intergenic (+4018/+18518) | unknown/unknown | tRNA‑Gly‑GCC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (5/6); total (5/6) | |||||||||||
ATTCACAAGAAGAGTTAGAGAAAGGCGTTAATACTATTTTTATAAAACCTCTAATTCGTTATGAAGAGATAAATTTCCAAAATTTAGGACGCCCATTAGAAATAATTACAGATGGAAACATGATCACAGAATATAAATATGGATTTTTTAATTAAGTAAATTATGAATGAATCAATCAATCAATCAATCAATTGCAATATTAATTCCTTGTTATAATGAAGAACATAGTATATCCGATACTGTTCTCTCATTTAGATCCGCTTTGCCTTTGGCAAAAATCTACGTTTATGATAATAATTCGACAGATAAAACTTTTGAAATTGCAAGTAAACTAGATTGTATTGTACGCAATGAACCTAAACAAGGAAAAGGTGCCGTCGTTCGCAGAATGTTTGCAGATATTGATGCAGACA > 1/1645685‑1646097 |||| aTTCACAAGAAGAGTTAGAGAAAGGCGTTAATACTATTTTTATAAAACCTCTAATTCGTTATGAAGAGATAAATTTCCAAAATTTAGGACGCCCATTAGAAATAATTACAGATGGAAACATGATCACAGAATATAAATATGGATTTTTTAATTAAGTAAATTATGAATG‑‑‑‑AATCAATCAATCAATCAATTGCAATATTAATTCCTTGTTATAATGAAGAACATAGTATATCCGATACTGTTCTCTCATTTAg < 1:499549/251‑1 (MQ=255) ttATAAAACCTCTAATTCGTTATGAAGAGATAAATTTCCAAAATTTAGGACGCCCATTAGAAATAATTACAGATGGAAACATGATCACAGAATATAAATATGGATTTTTTAATTAAGTAAATTATGAATG‑‑‑‑AATCAATCAATCAATCAATTGCAATATTAATTCCTTGTTATAATGAAGAACATAGTATATCCGATACTGTTCTCTCATTTAGATCCGCTTTGCCTTTGGCAAAAATCTACGTTTATGataa > 1:859374/1‑251 (MQ=255) aTTAGAAATAATTACAGATGGAAACATGATCACAGAATATAAATATGGATTTTTTAATTAAGTAAATTATGAATG‑‑‑‑AATCAATCAATCAATCAATTGCAATATTAATTCCTTGTTATAATGAAGAACATAGTATATCCGATACTGTTCTCTCATTTAGATCCGCTTTGCCTTTGGCAAAAATCTACGTTTATGATAATAATTCGACAGATAAAACTTTTGAAATTGCAAGTAAACTAGATTGTATTGTACGc < 1:182360/251‑1 (MQ=255) cAGATGGAAACATGATCACAGAATATAAATATGGATTTTTTAATTAAGTAAATTATGAATG‑‑‑‑AATCAATCAATCAATCAATTGCAATATTAATTcc < 1:395114/95‑1 (MQ=255) aaaCATGATCACAGAATATAAATATGGATTTTTTAATTAAGTAAATTATGAATG‑‑‑‑AATCAATCAATCAATCAATTGCAATATTAATTCCTTGTTATAATGAAGAACATAGt < 1:365006/110‑1 (MQ=255) cATGATCACAGAATATAAATATGGATTTTTTAATTAAGTAAATTATGAATG‑‑‑‑AATCAATCAATCAATCAATTGCAATATTAATTCCTTGTTATAATGAAGAACATAGTATATCCGATAc > 1:690948/1‑118 (MQ=255) atatAAATATGGATTTTTTAATTAAGTAAATTATGAATG‑‑‑‑AATCAATCAATCAATCAATTGCAATATTAATTCCTTGTTATAATGAAGAACATAGTATATCCGATACTGTtctct < 1:248383/114‑1 (MQ=255) atatAAATATGGATTTTTTAATTAAGTAAATTATGAATG‑‑‑‑AATCAATCAATCAATCAATTGCAATATTAATTCCTTGTTATAATGAAGAACATAGTATATCCGATACTGTTCTCTCATTTAGATCCGCTTTGCCTTTGGCAAAAATCTACGTTTATGATAATAATTCGACAGATAAAACTTTTGaaa < 1:190195/186‑1 (MQ=255) atatAAATATGGATTTTTTAATTAAGTAAATTATGAATG‑‑‑‑AATCAATCAATCAATCAATTGCAATATTAATTCCTTGTTATAATGAAGAACATAGTATATCCGATACTGTTCTCTCATTTAGATCCGCTTTGCCTTTGGCAAAAATCTACGTTTATGATAATAATTCGACAGATAAAACTTTTGAAATTGCAAGTAAACTAGATTGTATTGTACGCAATGAACCTAAACAAGGAAAAGGTGCCGTCGTTCg > 1:154853/1‑250 (MQ=255) atatAAATATGGATTTTTTAATTAAGTAAATTATGAATG‑‑‑‑AATCAATCAATCAATCAATTGCAATATTAATTCCTTGTTATAATGAAGAACATAGTATATCCGATACTGTTCTCTCATTTAGATCCGCTTTGCCTTTGGCAAAAATCTACGTTTATGATAATAATTCGACAGATAAAACTTTTGAAATTGCAAGTAAACTAGATTGTATTGTACGCAATGAACCTAAACAAGGAAAAGGTGCCGTCGTTCg > 1:666454/1‑250 (MQ=255) aaTATGGATTTTTTAATTAAGTAAATTATGAATG‑‑‑‑AATCAATCAATCAATCAATTGCAATATTAATTCCTTGTTATAATGAAGAACATAGTATATCCGATACTGTTCTCTCATTTAGATCCGCTTTGCCTTTGGCAAAAATCTACGTTTATGATAATAATTCGACAGATAAAACTTTTGAAATTGCAAGTAAACTAGATTGTATTGTACGCAATGAACCTAAACAAGGAAAAGGTGCCGTCGTTCGCAGAAt > 1:473543/1‑251 (MQ=255) aattatgaatgaATCAATCAATCAATCAATTGCAATATTAATTCCTTGTTATAATGAAGAACATAGTATATCCGATACTGTTCTCTCATTTAGATCCGCTTTGCCTTTGGCAAAAATCTACGTTTATGATAATAATTCGACAGATAAAACTTTTGAAATTGCAAGTAAACTAGATTGTATTGTACGCAATGAACCTAAACAAGGAAAAGGTGCCGTCGTTCGCAGAATGTTTGCAGATATTGATGCAGACa < 1:294694/247‑1 (MQ=255) attatgaatgaATCAATCAATCAATCAATTGCAATATTAATTCCTTGTTATAATGAAGAACATAGTATATCCGATACTGTTCTCTCATTTAGATCCGCTTTGCCTTTGGCAAAAATc > 1:889811/4‑117 (MQ=255) attatgaatgaATCAATCAATCAATCAATTGCAATATTAATTCCTTGTTATAATGAAGAACATAGTATATCCGATACTGTTCTCTCATTTAGATCCGCTTTGCCTTTGGCAAAAATCTACGTTTATGATAATAATTCGACAGATAAAACTTTTGAAATTGCAAGTAAACTAGat < 1:416170/171‑1 (MQ=255) gaatgaatCAATCAATCAATCAATTGCAATATTAATTCCTTGTTATAATGAAGAACATAGTATATCCGATACTGTTCTCTCATTTAGATCCGCTTTGCCTTTGGCAAAAATCTACGTTTATGATAATAATTCGACAGATAAAACTTTTGAAATTGCAAGTAAACTAGATTGTATTGTACGCAATGAACCTAAACAAGGAAAAGGTGCCGTCGTTCGCAGAATGTTTGCAGATATTGATg < 1:472238/239‑1 (MQ=255) |||| ATTCACAAGAAGAGTTAGAGAAAGGCGTTAATACTATTTTTATAAAACCTCTAATTCGTTATGAAGAGATAAATTTCCAAAATTTAGGACGCCCATTAGAAATAATTACAGATGGAAACATGATCACAGAATATAAATATGGATTTTTTAATTAAGTAAATTATGAATGAATCAATCAATCAATCAATCAATTGCAATATTAATTCCTTGTTATAATGAAGAACATAGTATATCCGATACTGTTCTCTCATTTAGATCCGCTTTGCCTTTGGCAAAAATCTACGTTTATGATAATAATTCGACAGATAAAACTTTTGAAATTGCAAGTAAACTAGATTGTATTGTACGCAATGAACCTAAACAAGGAAAAGGTGCCGTCGTTCGCAGAATGTTTGCAGATATTGATGCAGACA > 1/1645685‑1646097 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |