| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,330,330 | (GCAAG)7→5 | intergenic (+170750/+90598) | unknown → / ← unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,330,303 | 0 | A | . | 100.0% | 80.9 / NA | 20 | intergenic (+170723/+90634) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (8/12); total (8/12) | |||||||||||
| * | 1 | 1,330,304 | 0 | G | . | 100.0% | 80.9 / NA | 20 | intergenic (+170724/+90633) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (8/12); total (8/12) | |||||||||||
| * | 1 | 1,330,305 | 0 | G | . | 100.0% | 80.9 / NA | 20 | intergenic (+170725/+90632) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (8/12); total (8/12) | |||||||||||
| * | 1 | 1,330,306 | 0 | C | . | 100.0% | 80.9 / NA | 20 | intergenic (+170726/+90631) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (8/12); total (8/12) | |||||||||||
| * | 1 | 1,330,307 | 0 | A | . | 100.0% | 80.9 / NA | 20 | intergenic (+170727/+90630) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (8/12); total (8/12) | |||||||||||
| * | 1 | 1,330,308 | 0 | A | . | 100.0% | 80.9 / NA | 20 | intergenic (+170728/+90629) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (8/12); total (8/12) | |||||||||||
| * | 1 | 1,330,309 | 0 | G | . | 100.0% | 80.9 / NA | 20 | intergenic (+170729/+90628) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (8/12); total (8/12) | |||||||||||
| * | 1 | 1,330,310 | 0 | G | . | 100.0% | 80.9 / NA | 20 | intergenic (+170730/+90627) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (8/12); total (8/12) | |||||||||||
| * | 1 | 1,330,311 | 0 | C | . | 100.0% | 80.9 / NA | 20 | intergenic (+170731/+90626) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (8/12); total (8/12) | |||||||||||
| * | 1 | 1,330,312 | 0 | A | . | 100.0% | 80.9 / NA | 20 | intergenic (+170732/+90625) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (8/12); total (8/12) | |||||||||||
CCCAACCAGTTCATTTCGTAAAATTCACGGCTGATGTCGGCTTGTTCTGCAATTTCAGATTGGAATTTTTCTAATAAAAATTGACCGCTTACATCGAAACAATTCGGGAAAAGAGCTTTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATTGTCAGAACTACGCCTCACCCAATAA > 1/1330056‑1330518 |||||||||| ttcatttcgtaaaattcacggctgatgtcggcttgttctgcaatttcagattggaatttttctaataaaaattgaccgcttacatcgaaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTaggc < 1:775374‑M2/133‑1 (MQ=255) ttcgtaaaattcacggctgatgtcggcttgttctgcaatttcagattggaatttttctaataaaaattgaccgcttacatcgaaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTaggcaaggc < 1:402172‑M2/138‑1 (MQ=255) tcacggctgatgtcggcttgttctgcaatttcagattggaatttttctaataaaaattgaccgcttacatcgaaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTaggcaaggcaaggcaaggc < 1:487610‑M2/148‑1 (MQ=255) tcacggctgatgtcggcttgttctgcaatttcagattggaatttttctaataaaaattgaccgcttacatcgaaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTaggcaaggcaaggcaaggc < 1:358413‑M2/148‑1 (MQ=255) ctgatgtcggcttgttctgcaatttcagattggaatttttctaataaaaattgaccgcttacatcgaaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTaggcaaggcaaggcaaggcaaggca < 1:631829‑M2/154‑1 (MQ=255) ggcttgttctgcaatttcagattggaatttttctaataaaaattgaccgcttacatcgaaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTtagtttaggcaaggcaaggcaaggcaaggcaagcatatt > 1:305433‑M2/90‑245 (MQ=255) gttctgcaatttcagattggaatttttctaataaaaattgaccgcttacatcgaaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGtttagtttaggcaaggcaaggcaaggcaaggcaagcatatttt > 1:870213‑M2/85‑240 (MQ=255) gattggaatttttctaataaaaattgaccgcttacatcgaaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATtttgcttgcaattaacgtttagtttaggcaaggcaaggcaaggcaaggcaagcatattttttactcctattactggt > 1:441213‑M2/71‑226 (MQ=255) attggaatttttctaataaaaattgaccgcttacatcgaaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATtttgcttgcaattaacgtttagtttaggcaaggcaaggcaaggcaaggcaagcatattttttactcctattactggt < 1:542898‑M2/181‑26 (MQ=255) attggaatttttctaataaaaattgaccgcttacatcgaaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTttgcttgcaattaacgtttagtttaggcaaggcaaggcaaggcaaggcaagcatattttttactcctattactgg < 1:469339‑M2/180‑25 (MQ=255) ttggaatttttctaataaaaattgaccgcttacatcgaaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTaggcaaggc > 1:125632‑M2/69‑206 (MQ=255) aataaaaattgaccgcttacatcgaaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAgt > 1:843693‑M2/56‑251 (MQ=255) taaaaattgaccgcttacatcgaaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAA‑TTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTAc > 1:636407‑M2/54‑243 (MQ=255) ttgaccgcttacatcgaaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTg < 1:511262‑M2/204‑1 (MQ=255) ttacatcgaaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATAc < 1:170108‑M2/212‑1 (MQ=255) tcgaaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAatat < 1:22655‑M2/217‑1 (MQ=255) aaacaattcgggaaaagagctttaagttgggTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTaggcaaggcaaggcaaggcaaggc > 1:692605‑M2/32‑184 (MQ=255) ggaaaagagctttaagttgggtAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATAc > 1:734897/22‑233 (MQ=255) gagctttaagttgggtAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGaa > 1:137326/16‑251 (MQ=255) gctttaagttgggtAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATGAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTATCAAGTACAAAGTGTACTTTGTTTTATACAatat < 1:34500/217‑1 (MQ=255) gctttaagttgggtAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAg > 1:275169/14‑234 (MQ=255) ggTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTAc < 1:71705/193‑1 (MQ=255) gTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATaaa > 1:697985/1‑251 (MQ=255) agTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTg < 1:330672/249‑1 (MQ=255) gCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAatgatg > 1:320664/1‑251 (MQ=255) aaaaGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTc < 1:99769/250‑1 (MQ=255) tttATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAatat < 1:42710/151‑1 (MQ=255) ctccGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATTGTCAGAACTACGc < 1:651693/251‑1 (MQ=255) ctccGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATTGTCAGAACTACGc < 1:515156/251‑1 (MQ=255) ttttAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATTGTCAGAACTACGCCTCACCCaataa < 1:762537/251‑1 (MQ=255) gTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTc > 1:509339/1‑186 (MQ=255) gTGATAGATTTTGCTTGCAATTAACGTTTAGTTT‑‑‑‑‑‑‑‑‑‑AGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATTGTCAGAACt < 1:230110/224‑1 (MQ=255) |||||||||| CCCAACCAGTTCATTTCGTAAAATTCACGGCTGATGTCGGCTTGTTCTGCAATTTCAGATTGGAATTTTTCTAATAAAAATTGACCGCTTACATCGAAACAATTCGGGAAAAGAGCTTTAAGTTGGGTAAGTTGTGCAGAGTTAGCGGAAACGCCGTCACGAGAGAAAAGTTCTTCGGAGATCATTTATCCTCCGAATAAATTTTTAAGAAAAGTGATAGATTTTGCTTGCAATTAACGTTTAGTTTAGGCAAGGCAAGGCAAGGCAAGGCAAGGCAAGGCAAGCATATTTTTTACTCCTATTACTGGTTGTCAAGTACAAAGTGTACTTTGTTTTATACAATATCGAGTGTTAAAAAGCTGAAACTACGCCGGTCGGAAAAATCAATAAATCTATTGAATGATGATTCCTGCTAGCGTAATTTCAGCTCATTTAATTGTCAGAACTACGCCTCACCCAATAA > 1/1330056‑1330518 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |