| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,307,347 | (A)11→9 | intergenic (+147767/+113589) | unknown → / ← unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,307,338 | 0 | A | . | 100.0% | 259.6 / NA | 62 | intergenic (+147758/+113599) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (26/36); total (26/36) | |||||||||||
| * | 1 | 1,307,339 | 0 | A | . | 88.7% | 194.8 / 20.8 | 62 | intergenic (+147759/+113598) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base A (4/3); new base . (22/33); total (26/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 | |||||||||||
AAGTCAATATCACTTGAAAATGTAACTCGTTTTACTAAAATTTACGTATTATTTTCATTTTATGGATGTAAAACACCGAACAAAATGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGCAAAAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAGATGTCATTTGTTGTATAGTTGTTGCCATATTGAATGTATATGCTGCCTTGTGGCGCGTCCTTAGTAT > 1/1307104‑1307563 || atggttcagtttttggcggcaatttggttggttctggtgctgttgctgaatttgggcttttgggcaTGTAAAACACCGAATAAAATGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTTAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAaaatcgcaaaaaaaaagcgaaac < 1:446769‑M2/184‑8 (MQ=255) gttcagtttttggcggcaatttggttggttctggtgctgttgctgaatttgggcttttgggcaTGTAAAACACCGAACAAAATGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTTAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑AAAAAAAAAGCGAAACaaaa > 1:788025‑M2/64‑251 (MQ=255) tggttctggtgctgttgctgaatttgggcttttgggcaTGTAAAACACCGAACAAAATGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTTAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑AAAAAAAAAGCGAAACAAAATGCGAAAATAAAAAAGCGTTTaaaa < 1:190770‑M2/213‑1 (MQ=255) gttctggtgctgttgctgaatttgggcttttgggcaTGTAAAACACCGAACAAAATGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTTAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑AAAAAAAAAGCGAAACAAAATGCGAAAATAAAAAAGCGTTTaaaaa < 1:830328‑M2/214‑1 (MQ=255) ttattTTCATTTTATGGATGTAAAACACCGAACAAAATGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTaaa > 1:555308/1‑251 (MQ=255) attTTCATTTTATGGATGTAAAACACCGAACAAAATGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGCaaaaaaaaacgaaac < 1:741345/199‑7 (MQ=255) cATTTTATGGATGTAAAACACCGAACAAAATGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAATCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGCaaaaaaaaac > 1:258254/1‑188 (MQ=255) tGGATGTAAAACACCGAACAAAATGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTc < 1:338818/251‑1 (MQ=255) ggcaTGTAAAACACCGAACAAAATGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTTAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑AAAAAAAAAGCGAAACAAAATGCGAAAATaaaaaagcgtttaaaaatcgtttaaaagcggtttaaataaatattttaa > 1:372924‑M2/5‑227 (MQ=255) gcaTGTAAAACACCGAACAAAATGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTTAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑AAAAAAAAAGCGAAACAAAATGCGAAAAtaaaaaagcgtttaaaaatcgtttaaaagcggtttaaataaatattttaac < 1:300962‑M2/247‑25 (MQ=255) aTGTAAAACACCGAACAAAATGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTa > 1:24356/1‑251 (MQ=255) gAACAAAATGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGt > 1:523399/1‑251 (MQ=255) aaCAAAATGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGtt > 1:629288/1‑251 (MQ=255) aaTGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCGAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATc < 1:685169/251‑1 (MQ=255) aaTGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATc < 1:302239/251‑1 (MQ=255) tGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAg < 1:62827/251‑1 (MQ=255) aaaCTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTTAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑AAAAAAAAAGCGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAAt > 1:755651/1‑182 (MQ=255) aaaCTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAAt < 1:721539/190‑1 (MQ=255) aaaCTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAg < 1:719834/237‑1 (MQ=255) aaaCTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGa > 1:715551/1‑250 (MQ=255) aaaCTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGa > 1:691916/1‑250 (MQ=255) aaaCTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAACGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGa > 1:446471/1‑250 (MQ=255) aCTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGacac < 1:147606/251‑1 (MQ=255) aCTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGaca > 1:809109/1‑250 (MQ=255) aTGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑AAAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCcgcg > 1:163905/1‑251 (MQ=255) gTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGCTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAAAGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCaa > 1:665093/1‑251 (MQ=255) aGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGttt > 1:538307/1‑251 (MQ=255) ggAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTAtgt > 1:271810/1‑251 (MQ=255) ggAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTAtg < 1:373017/250‑1 (MQ=255) gAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAACCGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTAtgt < 1:52933/250‑1 (MQ=255) aaGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATc < 1:432625/215‑1 (MQ=255) gTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCt > 1:108889/1‑181 (MQ=255) tGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAGTGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGc < 1:273227/250‑1 (MQ=255) ggAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAg < 1:90126/201‑1 (MQ=255) gAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTg > 1:467528/1‑191 (MQ=255) aCAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATAc < 1:353572/251‑1 (MQ=255) aaaaCCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAg < 1:147758/251‑1 (MQ=255) aaaaCCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAg < 1:461794/251‑1 (MQ=255) aaaaCCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAg < 1:681819/251‑1 (MQ=255) aaaaCCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAg < 1:489979/251‑1 (MQ=255) aCCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAGATg < 1:80953/251‑1 (MQ=255) aaTGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTaaa < 1:336113/198‑1 (MQ=255) aaTGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTAtg > 1:326268/1‑230 (MQ=255) aaaCAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCcgc < 1:212182/209‑1 (MQ=255) aaaCAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAg > 1:722630/1‑240 (MQ=255) gcgcAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAGATGTCATTTGTTGTATAg < 1:82155/250‑1 (MQ=255) gcgcAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAGATGTCATTTGTTGTATAg < 1:86317/250‑1 (MQ=255) aGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTaaa < 1:269121/180‑1 (MQ=255) aGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAGATGTCATTTGTTGTATAgttg > 1:233071/1‑248 (MQ=255) gAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAGATGTCATttgttg < 1:805654/239‑1 (MQ=255) aaaaaaCGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAGATGTCATTTGTTGTATAGTTGTTGcc < 1:431293/251‑1 (MQ=255) aaaaaaCGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAGATGTCATTTGTTGTATAGTTGTTGc > 1:287038/1‑250 (MQ=255) tCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAGATGTCATTTGTTGTATAGTTGTTGCCATATTGAATg < 1:269012/250‑1 (MQ=255) ccTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAg > 1:243863/1‑213 (MQ=255) tttATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAGATGTCATTTGTTGTATAGTTGTTGCCATATTGAATGTATAtgc < 1:584989/251‑1 (MQ=255) ttATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAGATGTCATTTGTTGTATAGTTGTTGCCATATTGAATGTATAtgct < 1:631811/251‑1 (MQ=255) gaagaaTAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAGATGTCATTTGTTGTATAGTTGTTGCCATATTGAATGTATATGCTGCCtt > 1:378453/1‑251 (MQ=255) agaaTAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCACAAGTGATGTTTATGTTGTCTGCTATACAGATGTCATTTGTTGTATAGTTGTTGCCATATTGAATGTATATGCTGCCTtgt > 1:433544/1‑251 (MQ=255) gaaTAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGacac > 1:301303/1‑160 (MQ=255) gaaTAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTc < 1:897813/165‑1 (MQ=255) gaaTAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAg < 1:691492/199‑1 (MQ=255) aaTAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAGATGTCATTTGTTGTATAGTTGTTGCCATATTGAATGTATATGCTGCCTTGTgg < 1:353516/251‑1 (MQ=255) gAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAAt < 1:143431/123‑1 (MQ=255) gAATAAAAAATGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAg > 1:386739/1‑189 (MQ=255) aaaaaTGCGAAAAGTTTTAAAAATCGC‑‑AAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAGATGTCATTTGTTGTATAGTTGTTGCCATATTGAATGTATATGCTGCCTTGTGGCGCGTCCTTAGtat < 1:113357/251‑1 (MQ=255) || AAGTCAATATCACTTGAAAATGTAACTCGTTTTACTAAAATTTACGTATTATTTTCATTTTATGGATGTAAAACACCGAACAAAATGAGAAAAAGGAATAAACTAGGGAGAATGTTGAATCAAGCGGGAATAAGTGGAACAAAACCAATGAAAACAAGGGCGCAAGAAAAAACGGCGTCCTTTTTTATTGAAGAATAGACAAGAATAAAAAATGCGAAAAGTTTTAAAAATCGCAAAAAAAAAAACGAAACAAAATGCGAAAATAAAAAAGCGTTTAAAAATCGTTTAAATGTCATTTAAAGCGGTTTTTTGTTCTTATTTTCTAATTGTTTTATCAGTGCGTAAATCTGACACTTTTCCGCGCAAGTGATGTTTATGTTGTCTGCTATACAGATGTCATTTGTTGTATAGTTGTTGCCATATTGAATGTATATGCTGCCTTGTGGCGCGTCCTTAGTAT > 1/1307104‑1307563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |