Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,290,420 Δ1 bp intergenic (+130840/+130517) unknown → / ← unknown tRNA‑Val‑GAC/tRNA‑Met‑CAT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,290,4200C.100.0% 84.3 / NA 21intergenic (+130840/+130517)unknown/unknowntRNA‑Val‑GAC/tRNA‑Met‑CAT
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (12/9);  total (12/9)

ATCCAACCTTCCGTCACAAAATCACGCACTGCATATAAGGTCGCGTTTAACCAATCGCGCTGACTTGCCTCTTTAGGCGAGCGCCCGATAAGAAAAATCAGTTTATAGACGATCGCCTTCTTCAATGATGCCACATTGATTTCAGGATGATCGTACAAGAATGGAGAATCGAAGTTATCCATTATCATATAAAATAGTCCTCAGTTAACAATCAAAAAAACAGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAATATTGGTAGTGGGTTGCAGAGATTTGCCAACTGAAATCTTGTTCCATTGCAATAACGCGAACACTTGCCCATAAGCGTTGTTTTTTCCATAAAGCAAATGCCGCTTGCAACGCATGACGTAAGTC  >  1/1290200‑1290663
                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                   
aTCCAACCTTCCGTCACAAAATCACGCACTGCATATAAGGTCGCGTTTAACCAATCGCGCTGACTTGCCTCTTTAGGCGAGCGCCCGATAAGAAAAATCAGTTTATAGACGATCGCCTTCTTCAATGATGCCATATTGATTTCGGGATGATCGTACAAGAATGGAGAATCGAAGTTATCCATTATCATATAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATaaaaa                                                                                                                                                                                                                       <  1:70081/250‑1 (MQ=255)
aTCCAACCTTCCGTCACAAAATCACGCACTGCATATAAGGTCGCGTTTAACCAATCGCGCTGACTTGCCTCTTTAGGCGAGCGCCCGATAAGAAAAATCAGTTTATAGACGATCGCCTTCTTCAATGATGCCATATTGATTTCGGGATGATCGTACAAGAATGGAGAATCGAAGTTATCCATTATCATATAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATaaaaa                                                                                                                                                                                                                       <  1:527694/250‑1 (MQ=255)
                                                               cTTGCCTCTTTAGGCGAGCGCCCGATAAGAAAAATCAGTTTATAGACGATCGCCTTCTTCAATGATGCCATATTGATTTCGGGATGATCGTACAAGAATGGAGAATCGAAGTTATCCATTATCATATAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTAc                                                                                                                                                       <  1:430481/251‑1 (MQ=255)
                                                                      ctTTAGGCGAGCGCCCGATAAGAAAAATCAGTTTATAGACGATCGCCTTCTTCAATGATGCCATATTGATTTCGGGATGATCGTACAAGAATGGAGAATCGAAGTTATCCATTATCATATAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTAc                                                                                                                                                       >  1:30756/1‑244 (MQ=255)
                                                                                                                                                      tCGTACAAGAATGGAGAATCGAAGTTATCCATTATCATATAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAATATTGGTAGTGGGTTGCAGAGATTTGCCAACTGAAATCTTGTTCCATTGCAATAACGCGAaca                                                                >  1:876609/1‑251 (MQ=255)
                                                                                                                                                      tCGTACAAGAATGGAGAATCGAAGTTATCCATTATCATATAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAATATTGGTAGTGGGTTGCAGAGATTTGCCAACTGAAATCTTGTTCCATTGCAATAACGCGAaca                                                                >  1:558751/1‑251 (MQ=255)
                                                                                                                                                        gTACAAGAATGGAGAATCGAAGTTATCCATTATCATATAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTAc                                                                                                                                                       >  1:307042/1‑162 (MQ=255)
                                                                                                                                                        gTACAAGAATGGAGAATCGAAGTTATCCATTATCATATAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAATATTGGTAGTGGGTTGCAGAGATTTGCCAACTGAAATCTTGTTCCATTGCAATAACGCGAaca                                                                >  1:488992/1‑249 (MQ=255)
                                                                                                                                                                   gagaATCGAAGTTATCCATTATCATATAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAATATTGGTAGTGGGTTGCAGAGATTTGCCAACTGAAATCTTGTTCCATTGCAATAACGCGAACACTTGCCCATAAg                                                    <  1:891882/250‑1 (MQ=255)
                                                                                                                                                                     gaATCGAAGTTATCCATTATCATATAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAATATTGGTAGTGGGTTGCAGAGATTTGCCa                                                                                                  <  1:600569/202‑1 (MQ=255)
                                                                                                                                                                                       aTCATATAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACt                                                                                                                                                                 <  1:698908/121‑1 (MQ=255)
                                                                                                                                                                                       aTCATATAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAATATTGGTAGTGGGTTGCAGAGATTTGCCAACTGAAATCTTGTTCCATTGCAATAACGCGAACACTTGCCCATAAGCGTTGTTTTTTCCATAAAGCa                               >  1:61720/1‑251 (MQ=255)
                                                                                                                                                                                         cATATAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTAc                                                                                                                                                                                   <  1:52279/101‑1 (MQ=255)
                                                                                                                                                                                         cATATAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAata                                                                                                                             >  1:109045/1‑155 (MQ=255)
                                                                                                                                                                                         cATATAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAATATTGGTAGTGGGTTGCag                                                                                                            <  1:478378/172‑1 (MQ=255)
                                                                                                                                                                                          atatAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAg                                                                                                                                                                        >  1:332139/1‑111 (MQ=255)
                                                                                                                                                                                          atatAAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAATATTGGTAg                                                                                                                      <  1:662209/161‑1 (MQ=255)
                                                                                                                                                                                           tataAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAATATTGGTAGTGGGTTGCAGAGATTTGCCAACTGAAATCTTGTTCCATTGCAATAACGCGAACACTTGCCCATAAGCGTTGTTTTTTCCATAAAGCAAATg                           >  1:702240/1‑251 (MQ=255)
                                                                                                                                                                                            ataAAATAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAATATTGGTAGTGGGTTGCAGGGATTTGCCAACTGAAATCTTGTTCCATTGCAATAACGCGAACACTTGCCCATAAGCGTTGTTTTTTCCATAAAGCAAATg                           >  1:432738/1‑250 (MQ=255)
                                                                                                                                                                                               aaaTAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAATATTGGTAGTGGGTTGCagag                                                                                                          >  1:246914/1‑168 (MQ=255)
                                                                                                                                                                                               aaaTAGTCCTCAGTTAACAATCAAAAAAA‑AGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAATATTGGTAGTGGGTTGCAGAGATTTGCCAACTGAAATCTTGTTCCATTGCAATAACGCGAACACTTGCCCATAAGCGTTGTTTTTTCCATAAAGCAAATGCCg                        >  1:731014/1‑250 (MQ=255)
                                                                                                                                                                                                                     caaaaaaaaGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAATATTGGTAGTGGGTTGCAGAGATTTGCCAACTGAAATCTTGTTCCATTGCAATAACGCGAACACTTGCCCATAAGCGTTGTTTTTTCCATAAAGCAAATGCCGCTTGCAACGCATGACGTAAGtc  <  1:339725/250‑1 (MQ=255)
                                                                                                                                                                                                                     caaaaaaaaGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAATATTGGTAGTGGGTTGCAGAGATTTGCCAACTGAAATCTTGTTCCATTGCAATAACGCGAACACTTGCCCATAAGCGTTGTTTTTTCCATAAAGCAAATGCCGCTTGCAACGCATGACGTAAGtc  <  1:745610/250‑1 (MQ=255)
                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                   
ATCCAACCTTCCGTCACAAAATCACGCACTGCATATAAGGTCGCGTTTAACCAATCGCGCTGACTTGCCTCTTTAGGCGAGCGCCCGATAAGAAAAATCAGTTTATAGACGATCGCCTTCTTCAATGATGCCACATTGATTTCAGGATGATCGTACAAGAATGGAGAATCGAAGTTATCCATTATCATATAAAATAGTCCTCAGTTAACAATCAAAAAAACAGGTGAAATTTTAATCATTCGAGATAAAAAAACAATAATAATCTTCCGTTCAAGCCGTATTTTTACTTGAACGAAAGATTAACTATTTCATTACTTAGATAAAATTCGTTGATATAAATATTGGTAGTGGGTTGCAGAGATTTGCCAACTGAAATCTTGTTCCATTGCAATAACGCGAACACTTGCCCATAAGCGTTGTTTTTTCCATAAAGCAAATGCCGCTTGCAACGCATGACGTAAGTC  >  1/1290200‑1290663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑