| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,019,169 | Δ1 bp | intergenic (‑12713/‑16050) | unknown ← / → unknown | tRNA‑Gly‑GCC/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,019,169 | 0 | G | . | 98.2% | 217.1 / ‑2.8 | 55 | intergenic (‑12713/‑16050) | unknown/unknown | tRNA‑Gly‑GCC/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base G (1/0); major base . (27/26); minor base A (0/1); total (28/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
ATCTGCAATCGGTGGTGGTACAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAGGTGCTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAACCCTCTATTATCAATAAATTAGATAGCTTAAAAGAACGTTATGAAGAGCTGGAAGCCTTGTTAGGCGATGCTTCCGTGATTAGCGATCAGGA > 1/1018929‑1019403 | aTCTGCAATCGGTGGTGGTACAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTc < 1:347780/250‑1 (MQ=255) tCGGTGGTGGTACAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGc < 1:827675/251‑1 (MQ=255) tCGGTGGTGGTACAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGc < 1:548659/251‑1 (MQ=255) cGGTGGTGGTACAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAgg > 1:11264/1‑249 (MQ=255) cGGTGGTGGTACAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCt < 1:126575/251‑1 (MQ=255) gtggtggtACAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCttt > 1:385285/1‑251 (MQ=255) gtggtggtACAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCttt > 1:55085/1‑251 (MQ=255) gtggtACAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTgg > 1:531662/1‑251 (MQ=255) gtggtACAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCAGGTGCGCGGGTACGTATCGTCGGCGGTTCACGGTTGAAAGTTTCTGCACTTTAAG‑GCTACCTATTCCTAAAAGGATTTTgg > 1:452355/1‑251 (MQ=255) ggtACAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAGAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAAGCTTTTGGCg > 1:178385/1‑251 (MQ=255) ggtACAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCg > 1:892170/1‑251 (MQ=255) ggtACAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCg > 1:303959/1‑251 (MQ=255) ggtACAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCg > 1:573050/1‑251 (MQ=255) ggtACAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCg > 1:501794/1‑251 (MQ=255) cAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAAt > 1:573893/1‑251 (MQ=255) ggTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATc > 1:582851/1‑250 (MQ=255) gTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTa > 1:571331/1‑251 (MQ=255) aGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACt < 1:470418/250‑1 (MQ=255) cGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACAt < 1:84702/251‑1 (MQ=255) gTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAacaaca > 1:362026/1‑248 (MQ=255) gTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAAc < 1:306453/233‑1 (MQ=255) gTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCAtt > 1:108684/1‑251 (MQ=255) ttACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTc < 1:105733/251‑1 (MQ=255) cAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTa > 1:694238/1‑251 (MQ=255) gTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGa > 1:307589/1‑251 (MQ=255) tAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGaa < 1:56985/251‑1 (MQ=255) tAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGaa < 1:657096/251‑1 (MQ=255) tAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGaa < 1:464699/251‑1 (MQ=255) tAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGaa < 1:124417/251‑1 (MQ=255) tAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGaa < 1:221217/251‑1 (MQ=255) ttGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTcc < 1:383421/251‑1 (MQ=255) tCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGaa < 1:84970/204‑1 (MQ=255) aaaTTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAATGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAACCCTCtatta < 1:432277/249‑1 (MQ=255) aaaTTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAACCCTCtatta < 1:847828/249‑1 (MQ=255) aaTTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTcc > 1:869322/1‑216 (MQ=255) tGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAACCCTCTATTATCAATAAATTAGAt < 1:496284/251‑1 (MQ=255) tGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAACCCTCTATTATCAATAAATTAGAt < 1:113142/251‑1 (MQ=255) tGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAACCCTCTATTATCAATAAATTAGAt < 1:301990/251‑1 (MQ=255) gCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGaa > 1:206220/1‑170 (MQ=255) aCCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAACCCTCTATTATCAATAAATTAGATAGCTTAAAAGaa > 1:502983/1‑250 (MQ=255) aaCTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTc < 1:602022/144‑1 (MQ=255) aCTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAACCCTCTATTATCAATAAATTAGATAGCTTAAAAGAACGTTAt > 1:425716/1‑251 (MQ=255) ttAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAACCCTCTATTATCAATAAAtt < 1:295844/227‑1 (MQ=255) cgcgGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAACCCTCTATTATCAATAAATTAGATAGCTTAAAAGAACGTTATGAAGAGCTGGAAGc > 1:19057/1‑250 (MQ=255) gTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAACCCTCTATTATCAATAAATTAGATAGCTTAAAAGAACGTTATGAAGAGCTGGAAGCCTTGtt > 1:170925/1‑251 (MQ=255) cGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAAcc < 1:863108/188‑1 (MQ=255) cACGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAACCCTCTATTATCAATAAATTAGATAGCTTAAAAGAACGTTATGAAGAGCTGGAAGCCTTGTTAGGCGATGCTTCCGTGAtt < 1:561498/251‑1 (MQ=255) cGTTTGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAACCCTCtatta > 1:587623/1‑178 (MQ=255) tttGAACGTTTCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAACCCTCTATTATCAATAAATTAGATAGCTTAAAAg > 1:99818/1‑200 (MQ=255) tttGAACGTGTCTGCACTTTAAG‑ACTACCTATTCCTAAAAGGCTTTTGGCCAAATCCGGAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATGTTTTTATTTCCTTTTCTATTTTCCTTCCGAATGTCAAATAATGAAACCCTCTATTATCaa < 1:700165/180‑1 (MQ=255) tttCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGaa < 1:14240/102‑1 (MQ=255) tttCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGaa < 1:288734/102‑1 (MQ=255) tttCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCt > 1:285279/1‑137 (MQ=255) tttCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAaataa > 1:77479/1‑153 (MQ=255) tttCTGCACTTTAAGT‑CTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAACCCTCTATTATCAATAAATTAGATAGCTTAAAAGAACGTTATGAAGAGCTGGAAGCCTTGTTAGGCGATGCTTCCGTGATTAGCGATCAGGa > 1:232685/1‑250 (MQ=255) | ATCTGCAATCGGTGGTGGTACAGGTAGAGCGCTTGCAACGGCTGTTGGAGCAATTGCCGGTGCAGTTACCGGCAGTAAGGTTGAAGAAAAAGTCAGCCAAGTTAGCGCCTTGGAAATGGTAATCAAAAAAGATGACGGAAAAGAAATTGTTGTAGTGCAAAAAGCCGAACCTAACTTAGTGCCGGGTGCGCGGGTACGTATCGTCGGCGGTTCACGTTTGAACGTTTCTGCACTTTAGGTGCTACCTATTCCTAAAAGGCTTTTGGCGAAATCCGAAAGCCTTTTTTACAGCCTAAACTTCAACAACATTTTCATTCTGTGCTAGAATGCTCCGATTTTTTTATTTCCTTTTCTATTTTCCTTCTGAAGGTCAAATAATGAAACCCTCTATTATCAATAAATTAGATAGCTTAAAAGAACGTTATGAAGAGCTGGAAGCCTTGTTAGGCGATGCTTCCGTGATTAGCGATCAGGA > 1/1018929‑1019403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |