Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,135,545 3 bp→CAA coding (150‑152/1650 nt) unknown ← Type IV secretion system protein VirD4

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,135,5450AC100.0% 134.6 / NA 48L51W (CTG→TGG) unknownType IV secretion system protein VirD4
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (26/22);  total (26/22)
*11,135,5460GA100.0% 133.8 / NA 48L51W (CTG→TGG) unknownType IV secretion system protein VirD4
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (26/22);  total (26/22)
*11,135,5470GA100.0% 135.7 / NA 48I50I (ATC→ATT) unknownType IV secretion system protein VirD4
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (26/22);  total (26/22)

TTCCCGCGCTTCCGAGGCAGTCGCAAATTCGGCGTTACCATAAAGATTCTTTTTAGGCTGATAGAAGAGTTTCAGCATAATCAGTAGGCAGACGACAAAACTAATCAATAAG‑GATTGCCAGATTTTCGGATAATTTCCCAGGATGGCATCCAGCGTAAGAGTAGGGTAGTAACGCTTGAACGCTTCAATCAGACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGAAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGATTTCCGTCATGTGTCTGCCGTGTTCATGACTGTTGGTA  >  1/1135406‑1135780
                                                                                                                                            |||                                                                                                                                                                                                                                         
tttttgtacttctgattttgtggCAAATTCAGCGTTACCATAAAGGGATTTTTTAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAg                                                                                                                              <  1:878219/229‑1 (MQ=255)
   ttgtacttctgattttgtggCAAATTCAGCGTTACCATAAAGGGATTTTTTAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGa                                                                                                                           >  1:339015/20‑251 (MQ=255)
     gtacttctgattttgtggCAAATTCAGCGTTACCATAAAGGGATTTTTTAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACa                                                                                                                         >  1:377257/18‑251 (MQ=255)
        cttctgattttgtggCAAATTCAGCGTTACCATAAAGGGATTTTTTAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACaaa                                                                                                                       >  1:175940/15‑250 (MQ=255)
        cttctgattttgtggCAAATTCAGCGTTACCATAAAGGGATTTTTTAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAAc                                                                                                                      <  1:102095/237‑1 (MQ=255)
        cttctgattttgtggCAAATTCAGCGTTACCATAAAGGGATTTTTTAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCCCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAAc                                                                                                                      <  1:438044/237‑1 (MQ=255)
                tttgtggCAAATTCAGCGTTACCATAAAGGGATTTTTTAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGaataa                                                                                                              <  1:820065/245‑1 (MQ=255)
                    tggCAAATTCAGCGTTACCATAAAGGGATTTTTTAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGc                                                                                                           <  1:492742/248‑1 (MQ=255)
                    tggCAAATTCAGCGTTACCATAAAGGGATTTTTTAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGc                                                                                                           <  1:724521/248‑1 (MQ=255)
                        aaaTTCAGCGTTACCATAAAGGGATTTTTTAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAatat                                                                                                      <  1:106068/251‑1 (MQ=255)
                                cGTTACCATAAAGGGATTTTTTAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTACGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCtttt                                                                                              >  1:275186/1‑251 (MQ=255)
                                    accataaagggattttttAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGaataa                                                                                                              <  1:322697/218‑1 (MQ=255)
                                    accataaagggattttttAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTtca                                                                                          >  1:665924/14‑251 (MQ=255)
                                    accataaagggattttttAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTtca                                                                                          >  1:342106/14‑251 (MQ=255)
                                    accataaagggattttttAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTtca                                                                                          >  1:504395/14‑251 (MQ=255)
                                                ttttttATGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGaataa                                                                                                              >  1:839431/2‑219 (MQ=255)
                                                ttttttAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTcatcat                                                                                      >  1:785354/2‑243 (MQ=255)
                                                 tttttAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGaaaa                                                                                                                                              <  1:160864/186‑1 (MQ=255)
                                                 tttttAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACg                                                                                                                                          >  1:802996/1‑190 (MQ=255)
                                                  ttttAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCGCTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAacctacct                                                                            <  1:679974/251‑1 (MQ=255)
                                                  ttttAGGTTGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAacctacct                                                                            <  1:248688/251‑1 (MQ=255)
                                                       ggttGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGc                                                                                                           >  1:147112/4‑215 (MQ=255)
                                                          tGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACtt                                                                                                                                                    <  1:294301/171‑1 (MQ=255)
                                                          tGATAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGaa                                                                    >  1:476304/1‑251 (MQ=255)
                                                            aTAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAATTGGCATCTAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTaa                                                                                                                                                              >  1:388841/1‑159 (MQ=255)
                                                            aTAGAATAGTTTCAGCATGATTAGTAAGCTCACTACAAAACTAAT‑AAGGAGAGACTGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAg                                                                                                                              >  1:797784/1‑191 (MQ=255)
                                                                                             ctacaaaactaataaggagagactGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGATTTCCg                                  >  1:392351/24‑251 (MQ=255)
                                                                                             ctacaaaactaataaggagagactGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGATTTCCg                                  >  1:486176/24‑251 (MQ=255)
                                                                                                  aaactaataaggagagactGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGATTTCCGTCAtg                             <  1:786281/233‑1 (MQ=255)
                                                                                                  aaactaataaggagagactGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATCAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGATTTCCGTCAtg                             <  1:463098/233‑1 (MQ=255)
                                                                                                    actaataaggagagactGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAg                                         <  1:314391/221‑1 (MQ=255)
                                                                                                    actaataaggagagactGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCCTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATACAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGATTTCCGTCAtgtg                           >  1:443342/17‑251 (MQ=255)
                                                                                                     ctaatatggatagactGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGATTTCCGTCATgtgt                          >  1:869315/16‑251 (MQ=255)
                                                                                                     ctaataaggagagactGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAatat                                                                                                      <  1:229109/160‑1 (MQ=255)
                                                                                                     ctaataaggagagactGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTcatcat                                                                                      >  1:326821/16‑191 (MQ=255)
                                                                                                       aataaggagagactGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAac                                                                                  >  1:317060/14‑193 (MQ=255)
                                                                                                           aggagagactGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGATTTCCGTCATGTGTCTGCCg                    >  1:543871/10‑251 (MQ=255)
                                                                                                            ggagagactGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCt                                                                                                 >  1:120654/9‑173 (MQ=255)
                                                                                                            ggagagactGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGAtt                                      >  1:276380/9‑232 (MQ=255)
                                                                                                             gagagactGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGATTTCCGTCATGTGTCTGCCg                    <  1:344569/242‑1 (MQ=255)
                                                                                                             gagagactGCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGATTTCCGTCATGTGTCTGCCg                    <  1:318898/242‑1 (MQ=255)
                                                                                                                     gCCATATTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAacctacct                                                                            >  1:93268/1‑185 (MQ=255)
                                                                                                                      ccataTTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGATTTCCGTCATGTGTCTGCCGTGTTCATGAc          <  1:642513/246‑1 (MQ=255)
                                                                                                                        ataTTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGATTTCCGTCATGTGTCTGCCGTGTTCATGACTGt       <  1:361354/249‑1 (MQ=255)
                                                                                                                          aTTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTg                                                                                                    >  1:220848/1‑156 (MQ=255)
                                                                                                                          aTTTTCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGATTTCCGTCATGTGTCTGCCGTGTTCATGAc          <  1:782245/246‑1 (MQ=255)
                                                                                                                           ttttCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGATTTCCGTCATGTGTCTGCCGTGTTCATGACTGTTgg    <  1:320157/251‑1 (MQ=255)
                                                                                                                             ttCGGATAATTACCCCAAATGGCATCCAGCGTTAGAGTAGGGTAGTAGCGCTTAAATGCTTCGATTAAACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGGAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGATTTCCGTCATGTGTCTGCCGTGTTCATGACTGTTGGTa  >  1:581010/1‑251 (MQ=255)
                                                                                                                                            |||                                                                                                                                                                                                                                         
TTCCCGCGCTTCCGAGGCAGTCGCAAATTCGGCGTTACCATAAAGATTCTTTTTAGGCTGATAGAAGAGTTTCAGCATAATCAGTAGGCAGACGACAAAACTAATCAATAAG‑GATTGCCAGATTTTCGGATAATTTCCCAGGATGGCATCCAGCGTAAGAGTAGGGTAGTAACGCTTGAACGCTTCAATCAGACGAATTTTATTTGCCAGTAGAAGTAAAAGCCCACTTAGAAAATACGTCGGAAGCAAAGTGACAAACAGAAATAATGCAATATTGGCTTTTTTCATCATTAACCTACCTTGAGCGAATTCAGTTTAGCTTGCGGATCAAAATAGATTTCCGTCATGTGTCTGCCGTGTTCATGACTGTTGGTA  >  1/1135406‑1135780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑