Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 888,699 T→C T61T (ACT→ACC)  unknown → UPF0339 protein YegP.N / UPF0339 protein YegP.C

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1888,6990TC100.0% 232.9 / NA 81T61T (ACT→ACC) unknownUPF0339 protein YegP.N / UPF0339 protein YegP.C
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (34/47);  total (34/47)

CCTTTTCGGCAAGGAACAAAATAACTGTTAAGTAACGATTAAACCCGGGAGAAATTAAAATGGCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAACGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACTACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAATATACATAAAATAGATTGGGATTGTCGGCACTTCGGTGCCGA‑TTTTTTTGCTTAAAATGCGATCTCAGTCATGTTTTTTCGTCAAGT  >  1/888458‑888942
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                    
ccTTTTCGGCAAGGAACAAAATAACTGTTAAGTAACGATTAAACCCGGGAGAAATTAAAATGGCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAAt                                                                                                                                                                                                                                             >  1:395364/1‑251 (MQ=255)
         cAAGGAACAAAATAACTGTTAAGTAACGATTAAACCCGGGAGAAATTAAAATGGCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGcc                                                                                                                                                                                                                                     <  1:524173/250‑1 (MQ=255)
             gAACAAAATAACTGTTAAGTAACGATTAAACCCGGGAGAAATTAAAATGGCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTAtt                                                                                                                                                                                                                                >  1:581218/1‑251 (MQ=255)
             gAACAAAATAACTGTTAAGTAACGATTAAACCCGGGAGAAATTAAAATGGCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTAtt                                                                                                                                                                                                                                >  1:193892/1‑251 (MQ=255)
              aaCAAAATAACTGTTAAGTAACGATTAAACCCGGGAGAAATTAAAATGGCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTAttt                                                                                                                                                                                                                               <  1:865529/251‑1 (MQ=255)
              aaCAAAATAACTGTTAAGTAACGATTAAACCCGGGAGAAATTAAAATGGCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTAttt                                                                                                                                                                                                                               <  1:707292/251‑1 (MQ=255)
              aaCAAAATAACTGTTAAGTAACGATTAAACCCGGGAGAAATTAAAATGGCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTAttt                                                                                                                                                                                                                               <  1:702212/251‑1 (MQ=255)
                  aaaTAACTGTTAAGTAACGATTAAACCCGGGAGAAATTAAAATGGCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTa                                                                                                                                                                                                                           >  1:178787/1‑251 (MQ=255)
                        cTGTTAAGTAACGATTAAACCCGGGAGAAATTAAAATGGCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTaaaa                                                                                                                                                                                                                     <  1:716307/251‑1 (MQ=255)
                        cTGTTAAGTAACGATTAAACCCGGGAGAAATTAAAATGGCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTaaaa                                                                                                                                                                                                                     >  1:624520/1‑251 (MQ=255)
                                   cGATTAAACCCGGGAGAAATTAAAATGGCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAatca                                                                                                                                                                                                          >  1:267625/1‑251 (MQ=255)
                                                           aTGGCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAata                                                                                                                                                                                  <  1:61966/251‑1 (MQ=255)
                                                             ggCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGcc                                                                                                                                                                                                                                     <  1:446451/198‑1 (MQ=255)
                                                             ggCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAgg                                                                                                                                                                                                     <  1:781555/230‑1 (MQ=255)
                                                              gCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTAttt                                                                                                                                                                                                                               >  1:110918/1‑203 (MQ=255)
                                                               cacaAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAAtattat                                                                                                                                                                              <  1:180914/251‑1 (MQ=255)
                                                                acaAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATattatt                                                                                                                                                                             <  1:750027/251‑1 (MQ=255)
                                                                 caAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTAttc                                                                                                                                                                            <  1:506322/251‑1 (MQ=255)
                                                                 caAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTAttc                                                                                                                                                                            <  1:434183/251‑1 (MQ=255)
                                                                 caAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTAttc                                                                                                                                                                            <  1:37159/251‑1 (MQ=255)
                                                                   aGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTAttctt                                                                                                                                                                          >  1:829206/1‑251 (MQ=255)
                                                                    ggATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAat                                                                                                                                                                                                            <  1:859151/216‑1 (MQ=255)
                                                                    ggATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAgg                                                                                                                                                                                                     <  1:87250/223‑1 (MQ=255)
                                                                    ggATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTAttctt                                                                                                                                                                          >  1:467712/1‑250 (MQ=255)
                                                                    ggATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTAttctt                                                                                                                                                                          >  1:136218/1‑250 (MQ=255)
                                                                    ggATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTAttctt                                                                                                                                                                          >  1:167304/1‑250 (MQ=255)
                                                                     gATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAATCCGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTAttctt                                                                                                                                                                          >  1:191920/1‑250 (MQ=255)
                                                                              aaTTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTAttt                                                                                                                                                                                                                               <  1:31331/187‑1 (MQ=255)
                                                                               aTTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAgctg                                                                                                                                                                 >  1:494231/1‑248 (MQ=255)
                                                                                  aaaaTTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAAtatt                                                                                                                                                                                <  1:18697/230‑1 (MQ=255)
                                                                                       tAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACaaaaa                                                                                                                                                      <  1:21199/251‑1 (MQ=255)
                                                                                        aGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAg                                                                                                                                                     >  1:102070/1‑251 (MQ=255)
                                                                                          cAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGgt                                                                                                                                                   <  1:302819/251‑1 (MQ=255)
                                                                                            aaaGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGgtgt                                                                                                                                                 <  1:667680/251‑1 (MQ=255)
                                                                                                   gACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTAttt                                                                                                                                                                                                                               >  1:633720/1‑166 (MQ=255)
                                                                                                       aTTTATGTTCAATTTAATGGCAGCTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTaa                                                                                                                                      <  1:513425/251‑1 (MQ=255)
                                                                                                       aTTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAAtatt                                                                                                                                                                                >  1:855429/1‑209 (MQ=255)
                                                                                                       aTTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTagag                                                                                                                                             >  1:477639/1‑244 (MQ=255)
                                                                                                        tttATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAAt                                                                                                                                     <  1:461991/251‑1 (MQ=255)
                                                                                                        tttATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAAt                                                                                                                                     <  1:159509/251‑1 (MQ=255)
                                                                                                        tttATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAAt                                                                                                                                     <  1:807536/251‑1 (MQ=255)
                                                                                                            tGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGaac                                                                                                                                 <  1:67973/251‑1 (MQ=255)
                                                                                                            tGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGaac                                                                                                                                 <  1:680615/251‑1 (MQ=255)
                                                                                                                cAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACg                                                                                                                             >  1:863232/1‑251 (MQ=255)
                                                                                                                cAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACg                                                                                                                             >  1:619148/1‑251 (MQ=255)
                                                                                                                 aaTTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGc                                                                                                                            <  1:483578/251‑1 (MQ=255)
                                                                                                                           cAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGACATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGaa                                                                                                                  >  1:446356/1‑251 (MQ=255)
                                                                                                                              cTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTAttt                                                                                                                                                                                                                               <  1:270440/139‑1 (MQ=255)
                                                                                                                                 aCGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTc                                                                                                                                                                                                                              <  1:75816/137‑1 (MQ=255)
                                                                                                                                  cGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTAttc                                                                                                                                                                            >  1:315391/1‑186 (MQ=255)
                                                                                                                                     aCAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCggg                                                                                                        <  1:366177/251‑1 (MQ=255)
                                                                                                                                            attTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTa                                                                                                  >  1:560033/1‑250 (MQ=255)
                                                                                                                                            attTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTa                                                                                                  >  1:702667/1‑250 (MQ=255)
                                                                                                                                                       cGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGTAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAatat                                                                                       <  1:342223/250‑1 (MQ=255)
                                                                                                                                                       cGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAatat                                                                                       <  1:454297/250‑1 (MQ=255)
                                                                                                                                                             ttACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTACTGCACAAAAAGGTGTAGAGt                                                                                                                                            >  1:443352/1‑191 (MQ=255)
                                                                                                                                                             ttACAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGACAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATg                                                                                                                                    >  1:395839/1‑199 (MQ=255)
                                                                                                                                                               aCAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAATATACATAAAAt                                                                              <  1:83544/251‑1 (MQ=255)
                                                                                                                                                               aCAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAATATACATAAAAt                                                                              <  1:239622/251‑1 (MQ=255)
                                                                                                                                                               aCAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAATATACATAAAAt                                                                              <  1:626058/251‑1 (MQ=255)
                                                                                                                                                               aCAAAT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAATATACATAAAAt                                                                              <  1:48543/251‑1 (MQ=255)
                                                                                                                                                                  aaT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCg                                                                                               <  1:654597/231‑1 (MQ=255)
                                                                                                                                                                   aT‑CGAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAATATACATAAAATAGAt                                                                          <  1:151678/251‑1 (MQ=255)
                                                                                                                                                                       gAAAGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAATATAc                                                                                     <  1:78547/237‑1 (MQ=255)
                                                                                                                                                                         aaGCCTCCGCGCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAATATACATAAAATAGATTGGGa                                                                     <  1:126254/251‑1 (MQ=255)
                                                                                                                                                                                cgcgCAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGc                                                                                                                                                                                                                                      >  1:880487/1‑83 (MQ=255)
                                                                                                                                                                                    cAAAATGGCATTGCCTCCGTGCAAAAAAACGGAGTGGACGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATc                                                                                                     <  1:447323/208‑1 (MQ=255)
                                                                                                                                                                                      aaatggCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTag                                                                                                                                               >  1:196485/5‑164 (MQ=255)
                                                                                                                                                                                      aaatggCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAatat                                                                                       <  1:731054/216‑1 (MQ=255)
                                                                                                                                                                                                gCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGaac                                                                                                                                 >  1:298581/1‑168 (MQ=255)
                                                                                                                                                                                                           aaaaaaCGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTAttt                                                                                                                                                                                                                               <  1:773718/63‑1 (MQ=255)
                                                                                                                                                                                                               aaCGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAatat                                                                                       >  1:374730/1‑195 (MQ=255)
                                                                                                                                                                                                                aCGGAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAATATACATAAAATAGATTGGGATTGTCGGCACTTCGGTGCCGATTTTTTTTGCTTAAAATg                              <  1:589763/251‑1 (MQ=255)
                                                                                                                                                                                                                   gAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAatat                                                                                       <  1:280734/191‑1 (MQ=255)
                                                                                                                                                                                                                   gAGTGGATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAATATACATa                                                                                  <  1:361216/196‑1 (MQ=255)
                                                                                                                                                                                                                       ggATGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCggg                                                                                                        >  1:662887/1‑170 (MQ=255)
                                                                                                                                                                                                                          tGCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTAttc                                                                                                                                                                            <  1:376435/99‑1 (MQ=255)
                                                                                                                                                                                                                           gCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACaaaaa                                                                                                                                                      >  1:199597/1‑120 (MQ=255)
                                                                                                                                                                                                                           gCAAAAAACTTTGAATTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGtat                                                                                            >  1:428813/1‑178 (MQ=255)
                                                                                                                                                                                                                                         aTTTCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAatat                                                                                       >  1:833277/1‑169 (MQ=255)
                                                                                                                                                                                                                                            tCGTACCACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAATATACATAAAATAGATTGGGATTGTCGGCACTTCGGTGCCGATTTTTTTTGCTTAAAATGCGATCTCAGTCATGTTTTTTCGTCAAGt  >  1:384318/1‑251 (MQ=255)
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                    
CCTTTTCGGCAAGGAACAAAATAACTGTTAAGTAACGATTAAACCCGGGAGAAATTAAAATGGCACAAGGATATTACGAATTAAAATTAGCAAAAGATGGACAATTTATGTTCAATTTAATGGCAACTAACGGACAAATTATTTTAACCAGCGAGCTTTACAAAT‑CGAAAGCCTCCGCGCAAAACGGCATTGCCTCCGTGCAAAAAAACGGAGTGGATGCAAAAAACTTTGAATTTCGTACTACAAAAAATGATCAGCCTTATTTCGTATTAAAAGCGGCAAATCATCAGGAAATCGGTCGCAGCCAATATTATTCTTCGCAAGCTGCTGCACAAAAAGGTGTAGAGTCCGTAATGAACAACGCTTCCAGCGAAGATATTCGGGATCTTACCGTATAATATACATAAAATAGATTGGGATTGTCGGCACTTCGGTGCCGA‑TTTTTTTGCTTAAAATGCGATCTCAGTCATGTTTTTTCGTCAAGT  >  1/888458‑888942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑