| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 876,974 | G→A | G233D (GGC→GAC) | unknown → | CRISPR‑associated protein Cas1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 876,974 | 0 | G | A | 100.0% | 214.4 / NA | 80 | G233D (GGC→GAC) | unknown | CRISPR‑associated protein Cas1 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (44/36); total (44/36) | |||||||||||
AAAATCTTGATGAGGTTCGCGGTATCGAAGGCGATGCGGCGGCACGTTATTTCGGCGTATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGGCAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAATTGTTGTTTCAGGCGTTGCAGGCGAAAAAACAGGAGAAAATCGTTCATCCGTTTTTGGGCGAAGAGGTGGAAATCGGTTTATTGCCCTATAT > 1/876731‑877220 | aaaaTCTTGATGAGGTTCGCGGTATCGAAGGCGATGCGGCGGCACGTTATTTCGGCGTATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGAc < 1:112491/251‑1 (MQ=255)aaaaTCTTGATGAGGTTCGCGGTATCGAAGGCGATGCGGCGGCACGTTATTTCGGCGTATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGAc < 1:215544/251‑1 (MQ=255)aaaaTCTTGATGAGGTTCGCGGTATCGAAGGCGATGCGGCGGCACGTTATTTCGGCGTATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGAc < 1:48107/251‑1 (MQ=255) aTCTTGATGAGGTTCGCGGTATCGAAGGCGATGCGGCGGCACGTTATTTCGGCGTATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGCCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAg > 1:372920/1‑250 (MQ=255) tgaGGTTCGCGGTATCGAAGGCGATGCGGCGGCACGTTATTTCGGCGTATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAgcgc < 1:259532/251‑1 (MQ=255) tgaGGTTCGCGGTATCGAAGGCGATGCGGCGGCACGTTATTTCGGCGTATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAgcgc < 1:549278/251‑1 (MQ=255) ggTTCGCGGTATCGAAGGCGATGCGGCGGCACGTTATTTCGGCGTATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAgg > 1:820420/1‑251 (MQ=255) gcACGTTATTTCGGCGTATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTtggt < 1:163072/250‑1 (MQ=255) cGTTATTTCGGCGTATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAgcgc > 1:510604/1‑217 (MQ=255) cGTTATTTCGGCGTATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGt < 1:443036/251‑1 (MQ=255) cGTATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATgg < 1:123802/251‑1 (MQ=255) tATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGAc < 1:316819/194‑1 (MQ=255) tATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATgg > 1:546345/1‑249 (MQ=255) tATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATgg > 1:264859/1‑249 (MQ=255) tATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGgtg < 1:724169/251‑1 (MQ=255) aTCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGt < 1:729912/251‑1 (MQ=255) tCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTa < 1:523921/251‑1 (MQ=255) tCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTa < 1:117054/251‑1 (MQ=255) tCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTa < 1:148368/251‑1 (MQ=255) cTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTAt < 1:148010/251‑1 (MQ=255) gCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGa > 1:475299/1‑251 (MQ=255) gCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGAAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGa > 1:519411/1‑251 (MQ=255) cGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCg < 1:417955/251‑1 (MQ=255) cGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCg > 1:216254/1‑251 (MQ=255) aTACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAgcgc < 1:312305/180‑1 (MQ=255) aTACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATc > 1:572516/1‑219 (MQ=255) tACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGa < 1:806892/251‑1 (MQ=255) ggTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTaaa > 1:631487/1‑251 (MQ=255) tCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACcgg > 1:83663/1‑251 (MQ=255) aaaTCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGt > 1:193305/1‑208 (MQ=255) cccAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATgg > 1:248440/1‑187 (MQ=255) cccAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGt > 1:308430/1‑195 (MQ=255) cccAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAAcc > 1:281040/1‑221 (MQ=255) cccAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGggtggggg > 1:743198/1‑248 (MQ=255) cccAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGgtggtgg > 1:714678/1‑250 (MQ=255) gaCGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTaa < 1:407972/250‑1 (MQ=255) gaCGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTaa > 1:84268/1‑250 (MQ=255) cGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCt < 1:868524/251‑1 (MQ=255) gtgtGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGt > 1:877460/1‑185 (MQ=255) gtgtGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTa > 1:439618/1‑251 (MQ=255) gtgtGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGGGCGGTAACCTTa > 1:748691/1‑251 (MQ=255) aTGCTTTGCTTTCTTTCTTATATAGTGCTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGTACGCCGACCGACCAGACCGGGACAGCCTAGCGCAGGATCTTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAAt > 1:489343/1‑249 (MQ=255) ctttgctttCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAgcgc > 1:663856/1‑123 (MQ=255) ctttcttATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGaaaa > 1:561230/1‑251 (MQ=255) ctttcttATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGaaaa > 1:459353/1‑251 (MQ=255) ttcttATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATgg > 1:648314/1‑157 (MQ=255) ttcttATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTAt > 1:391289/1‑167 (MQ=255) ttcttATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATg > 1:186397/1‑208 (MQ=255) ttcttATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATg < 1:405149/208‑1 (MQ=255) ttcttATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAAt < 1:409765/235‑1 (MQ=255) ttcttATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAAtt > 1:483228/1‑251 (MQ=255) ttcttATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAAtt > 1:661097/1‑251 (MQ=255) ttcttATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAAtt > 1:647855/1‑251 (MQ=255) cttATCTAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAAttgt > 1:362980/1‑251 (MQ=255) cttATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCg < 1:160313/174‑1 (MQ=255) cttATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCgg < 1:191506/221‑1 (MQ=255) cttATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAAc < 1:202763/225‑1 (MQ=255) cttATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAAttgt > 1:458191/1‑251 (MQ=255) cttATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGGAACCTTAAAATCTGAAGCCAGAAAAttgt > 1:23609/1‑251 (MQ=255) atataGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGc > 1:834831/1‑237 (MQ=255) atataGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAATtgttgt > 1:400174/1‑251 (MQ=255) gtgtTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGcc < 1:626331/96‑1 (MQ=255) aGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAAt < 1:63257/212‑1 (MQ=255) gATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAATTGTTGTTTCAGGCGTTGCAGGCGaa > 1:516730/1‑251 (MQ=255) cTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAATTGTTGTTTCAGGCGTTGCAGGCGAAAAAACAGGAGAAAAt < 1:85109/251‑1 (MQ=255) ggTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGtt > 1:133611/1‑96 (MQ=255) ggTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTa < 1:177868/121‑1 (MQ=255) ggTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAATTGTTGTTTCAGGCGTTGCAGGCGAAAAAACAGGAGAAAATCGTTCATCCGtt > 1:567464/1‑251 (MQ=255) ggATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGCATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGGGGCGCGGTAACCTTAAAATCTGCAGCCAGAAAATTGTTGTTTCAGGCGTTGCAGGCGAAAAAACAGGAGAAAATCGTTCATCCGTTTTTgg > 1:587285/1‑251 (MQ=255) gTCGGTTTTCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAATTGTTGTTTCAGGCGTTGCAGGCGAAAAAACAGGAGAAAATCGTTCATCCGTTTTTGGGCGAaga < 1:378949/248‑1 (MQ=255) tttCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGGGGTGCGGGAACCTTAAAATCTGAAGCCAGAAAAt > 1:676285/1‑178 (MQ=255) tCTGCACGCCGACCGACCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAATTGTTGTTTCAGGCGTTGCAGGCGAAAAAACAGGAGAAAATCGTTCATCCGTTTTTGGGCGAAGAGGTGGAAATCg > 1:570092/1‑251 (MQ=255) ccgaccgaCCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAATTGTTGTTTCAGGCGTTGCAGGCGAAAAAACAGGAGAAAATCGTTCATCCGTTTTTGGGCGAaga < 1:384506/232‑1 (MQ=255) ccgaccgaCCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAATTGTTGTTTCAGGCGTTGCAGGCGAAAAAACAGGAGAAAATCGTTCATCCGTTTTTGGGCGAAGAGGTGGAAATCGGTTTATTg > 1:83339/1‑251 (MQ=255) cgaccgacCAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAATTGTTGTTTCAGGCGTTGCAGGCGAAAAAACAGGAGAAAATCGTTCATCCGTTTTTGGGCGAAGAGGTGGAAATCGGTTTATTGc < 1:676622/251‑1 (MQ=255) gaccAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAATTGTTGTTTCAGGCGTTGCAGGCGAAAAAACAGGAGAAAATCGTTCATCCGTTTTTGGGCGAAGAGGTGGAAATCGGTTTATTGCCCtat > 1:776576/1‑251 (MQ=255) ccAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAATTGTTGTTTCAGGCGTTGCAGGCGAAAAAACAGGAGAAAATCGTTCATCCGTTTTTGGGCGAAGAGGTGGAAATCGGTTTATTGCCCTatat < 1:439042/251‑1 (MQ=255) ccAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAATTGTTGTTTCAGGCGTTGCAGGCGAAAAAACAGGAGAAAATCGTTCATCCGTTTTTGGGCGAAGAGGTGGAAATCGGTTTATTGCCCTatat < 1:18556/251‑1 (MQ=255) ccAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAATTGTTGTTTCAGGCGTTGCAGGCGAAAAAACAGGAGAAAATCGTTCATCCGTTTTTGGGCGAAGAGGTGGAAATCGGTTTATTGCCCTatat < 1:877049/251‑1 (MQ=255) ccAGACAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAATTGTTGTTTCAGGCGTTGCAGGCGAAAAAACAGGAGAAAATCGTTCATCCGTTTTTGGGCGAAGAGGTGGAAATCGGTTTATTGCCCTatat < 1:598581/251‑1 (MQ=255) | AAAATCTTGATGAGGTTCGCGGTATCGAAGGCGATGCGGCGGCACGTTATTTCGGCGTATTTAATCTGCTTATTCGTGAGAATACCGGGTTTCATTTTGGCGGTCGAAATCGTCGCCCGCCCAGAGACGGTGTGAATGCTTTGCTTTCTTTCTTATATAGTGTTTTGGGGAAAGATATTAGCGGCGCGCTGCAAGGCGTAGGTCTGGATCCTCAGGTCGGTTTTCTGCACGCCGACCGACCAGGCAGGGACAGCCTAGCGCAGGATATTTTGGAAGAATTTCGCGCTTGGTGGGTTGATCGTATGGTGTTAAGTATGATTAATCGCTTGCAGATTAAACCGGCGGATTTTATTAATGAGGCGGGTGGTGCGGTAACCTTAAAATCTGAAGCCAGAAAATTGTTGTTTCAGGCGTTGCAGGCGAAAAAACAGGAGAAAATCGTTCATCCGTTTTTGGGCGAAGAGGTGGAAATCGGTTTATTGCCCTATAT > 1/876731‑877220 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |