| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 875,160 | T→G | V231G (GTA→GGA) | unknown → | Overcoming lysogenization defect protein Old |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 875,160 | 0 | T | G | 100.0% | 105.0 / NA | 39 | V231G (GTA→GGA) | unknown | Overcoming lysogenization defect protein Old |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (19/20); total (19/20) | |||||||||||
GCTCAACAAAAATATATACAATCAAATATTTTGGATCTAACATTCAGTTATGAATTAGAAAAAACAAATTTCATGGGGCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGTAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTATTTTGATATTGAATTAAATACTCCTGATATTGACTCCATTTTAAAATCTAATGCTTCAGTATGGATTAATGATGGCACTCGTACAGATATTGCACG > 1/874925‑875391 | gCTCAACAAAAATATATACAATCAAATATTTTGGATCTAACATTCAGTTATGAATTAGAAAAAACAAATTTCATGGGGCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCaa < 1:183232/249‑1 (MQ=255) caacaaAAATATATACAATCAAATATTTTGGATCTAACATTCAGTTATGAATTAGAAAAAACAAATTTCATGGGGCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAAc < 1:568254/241‑1 (MQ=255) caacaaAAATATATACAAACAAATATTTTGGATCTAACATTCAGTTATGAATTAGAAAAAACAAATTTCATGGGGCTGAAATCTTTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGt < 1:518464/251‑1 (MQ=255) caaAAATATATACAATCAAATATTTTGGATCTAACATTCAGTTATGAATTAGAAAAAACAAATTTCATGGGGCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAAc > 1:540086/1‑233 (MQ=255) aTCAAATATTTTGGATCTAACATTCAGTTATGAATTAGAAAAAACAAATTTCATGGGGCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAAc > 1:358664/1‑224 (MQ=255) aTCAAATATTTTGGATCTAACATTCAGTTATGAATTAGAAAAAACAAATTTCATGGGGCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGt > 1:329065/1‑251 (MQ=255) gATCTAACATTCAGTTATGAATTAGAAAAAACAAATTTCATGGGGCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACa < 1:518605/250‑1 (MQ=255) aTCTAACATTCAGTTATGAATTAGAAAAAACAAATTTCATGGGGCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTaa < 1:396394/244‑1 (MQ=255) tCTAACATTCAGTTATGAATTAGAAAAAACAAATTTCATGGGGCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAAc > 1:330994/1‑209 (MQ=255) tAACATTCAGTTATGAATTAGAAAAAACAAATTTCATGGGGCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGt > 1:385522/1‑217 (MQ=255) gTTATGAATTAGAAAAAACAAATTTCATGGGGCTGAAATCTGTTGCTAAAGGCA‑TTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAAt < 1:688886/233‑1 (MQ=255) ttATGAATTAGAAAAAACAAATTTCATGGGGCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGaa < 1:583745/250‑1 (MQ=255) aaTTAGAAAAAACAAATTTCATGGGGCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATac < 1:353022/250‑1 (MQ=255) aaTTAGAAAAAACAAATTTCATGGGGCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATac < 1:694968/250‑1 (MQ=255) aTTAGAAAAAACAAATTTCATGGGGCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATacag < 1:599711/251‑1 (MQ=255) aaaTTTCATGGGGCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAAc < 1:632218/251‑1 (MQ=255) gggCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGa > 1:54007/1‑251 (MQ=255) aaTCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTagag < 1:122913/251‑1 (MQ=255) gCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAAc < 1:853669/154‑1 (MQ=255) cTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATAc > 1:230251/1‑191 (MQ=255) gTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACAt > 1:37753/1‑173 (MQ=255) cGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTATTTTGata < 1:47760/251‑1 (MQ=255) cGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATAc > 1:538313/1‑145 (MQ=255) cAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTATTTTGATATTGAATTAAAt < 1:368439/251‑1 (MQ=255) gatgatTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTATTTTGATATTGAATTAAAt > 1:696845/1‑246 (MQ=255) cATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTATTTTGATATTGAATTAAATACTCCTGATATTGa > 1:112977/1‑250 (MQ=255) tCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTATTTTGATATTGAATTAAATACTCCTGATATTg < 1:447403/247‑1 (MQ=255) cGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTATTTTGATATTGAATTAAAt > 1:873485/1‑214 (MQ=255) gTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTATTTTGATATTGAATTAAATACTCCTGATATTGACTCCATTTTAAAATCTAATGCTTCAGTAt > 1:70656/1‑238 (MQ=255) gTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTATTTTGATATTGAATTAAATACTCCTGATATTGACTCCATTTTAAAATCTAATGCTTCAGTATGGATTAATGATgg > 1:158677/1‑251 (MQ=255) gTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTATTTTGATATTGAATTAAATACTCCTGatat < 1:807001/198‑1 (MQ=255) gTCAATGTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTATTTTGATATTGAATTAAATACTCCTGATATTGACTCCATTTTAAAATCTAATGc > 1:500983/1‑222 (MQ=255) gTCTCAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTatcatc < 1:210381/150‑1 (MQ=255) tctcAATATAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTa < 1:748283/161‑1 (MQ=255) atatAATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTATTTTGATATTGAATTAAATACTCCTGATATTGACTCCATTTTAAAATCTAATGCTTCAGTATGGATTAATGATGGCACTCGTACAg > 1:278229/1‑242 (MQ=255) ataATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCa < 1:677840/130‑1 (MQ=255) ataATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTATTTTGATATTGAATTAAATACTCCTGATATTGACTCCATTTTAAAATCTAATGCTTCAGTATGGATTAATGATGGCACTCGTACAGATATTGCACg > 1:665777/1‑250 (MQ=255) ataATGAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTATTTTGATATTGAATTAAATACTCCTGATATTGACTCCATTTTAAAATCTAATGCTTCAGTATGGATTAATGATGGCACTCGTACAGATATTGCACg > 1:806589/1‑250 (MQ=255) gAACATTGGCAAGGAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTATTTTGATATTGAATTAAATACTCCTGATATTGACTcc > 1:253199/1‑186 (MQ=255) | GCTCAACAAAAATATATACAATCAAATATTTTGGATCTAACATTCAGTTATGAATTAGAAAAAACAAATTTCATGGGGCTGAAATCTGTTGCTAAAGGCATTTTTGGTGAAGTTTATTTTCTGCCTGCCGTTAAAAACGCAACAGATGATTTTACATCAAAAGATAGTAGCGTTTTCGGTAAATTACTTGGCGAAGTTGTAGAGTCAATGTCTCAATATAATGAACATTGGCAAGTAACAAAACAGCAATTAGTAAATTTATTTTCTAAGTTTAGTAAATACATTGATGGCAAAGAAAATACAGACAGACCAAAACAGTTATTAGATTTAGAGAATGCGTTATCGCAAGAATTATCATCTTGGAATGCCTATTTTGATATTGAATTAAATACTCCTGATATTGACTCCATTTTAAAATCTAATGCTTCAGTATGGATTAATGATGGCACTCGTACAGATATTGCACG > 1/874925‑875391 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |