Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 874,755 T→C V96A (GTT→GCT)  unknown → Overcoming lysogenization defect protein Old

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1874,7550TC100.0% 201.6 / NA 71V96A (GTT→GCT) unknownOvercoming lysogenization defect protein Old
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (43/28);  total (43/28)

GAGCTAAGAATTTCAGCACAAGACTTGATGATTATTATTGGACAAAATAATCATGGCAAATCTAATTTATTATCAGCGATTCTATTCTTTTTTGGTGAAATTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGTTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAGGCTCAACAAAAATATATACAATCAAATATTTTGGATCTAACATTCAGTTATGAATTAGAA  >  1/874514‑874984
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                     
gagCTAAGAATTTCAGCACAAGACTTGATGATTATTATTGGACAAAATAATCATGGCAAATCTAATTTATTATCAGCGATTCTATTCTTTTTTGGTGAAATTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTggg                                                                                                                                                                                                                              >  1:433687/1‑251 (MQ=255)
  gCTAAGAATTTCAGCACAAGACTTGATGATTATTATTGGACAAAATAATCATGGCAAATCTAATTTATTATCAGCGATTCTATTCTTTTTTGGTGAAATTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGggtg                                                                                                                                                                                                                            >  1:46475/1‑251 (MQ=255)
                cacaAGACTTGATGATTATTATTGGACAAAATAATCATGGCAAATCTAATTTATTATCAGCGATTCTATTCTTTTTTGGTGAAATTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAat                                                                                                                                                                                                                <  1:704632/249‑1 (MQ=255)
                    aGACTTGATGATTATTATTGGACAAAATAATCATGGCAAATCTAATTTATTATCAGCGATTCTATTCTTTTTTGGTGAAATTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAat                                                                                                                                                                                                                >  1:665977/1‑245 (MQ=255)
                      aCTTGATGATTATTATTGGACAAAATAATCATGGCAAATCTAATTTATTATCAGCGATTCTATTCTTTTTTGGTGAAATTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAgg                                                                                                                                                                                                         <  1:501874/250‑1 (MQ=255)
                      aCTTGATGATTATTATTGGACAAAATAATCATGGCAAATCTAATTTATTATCAGCGATTCTATTCTTTTTTGGTGAAATTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAgg                                                                                                                                                                                                         <  1:756957/250‑1 (MQ=255)
                      aCTTGATGATTATTATTGGACAAAATAATCATGGCAAATCTAATTTATTATCAGCGATTCTATTCTTTTTTGGTGAAATTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGt                                                                                                                                                                                                        >  1:884401/1‑251 (MQ=255)
                                  ttattGGACAAAATAATCATGGCAAATCTAATTTATTATCAGCGATTCTATTCTTTTTTGGTGAAATTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAGGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAgt                                                                                                                                                                                            <  1:694533/251‑1 (MQ=255)
                                  ttattGGACAAAATAATCATGGCAAATCTAATTTATTATCAGCGATTCTATTCTTTTTTGGTGAAATTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAgt                                                                                                                                                                                            >  1:387085/1‑251 (MQ=255)
                                            aaaTAATCATGGCAAATCTAATTTATTATCAGCGATTCTATTCTTTTTTGGTGAAATTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCagaag                                                                                                                                                                                  >  1:230490/1‑251 (MQ=255)
                                             aataatCATGGCAAATCTAATTTATTATCAGCGATTCTATTCTTTTTTGGTGAAATTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCagaagc                                                                                                                                                                                 <  1:8113/251‑2 (MQ=255)
                                                aatCATGGCAAATCTAATTTATTATCAGCGATTCTATTCTTTTTTGGTGAAATTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGAt                                                                                                                                                                                                   <  1:11225/230‑1 (MQ=255)
                                                               aaTTTATTATCAGCGATTCTATTCTTTTTTGGTGAAATTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTCGAATATAAAGGTTg                                                                                                                                                                                                      <  1:277201/212‑1 (MQ=255)
                                                                 tttATTATCAGCGATTCTATTCTTTTTTGGTGAAATTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACg                                                                                                                                                             >  1:831956/1‑251 (MQ=255)
                                                                                                 aaaTTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATATGTTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGGGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACGAAGCGAGAGATCGCTAAt                                                                                                                             >  1:770476/1‑251 (MQ=255)
                                                                                                   aTTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAg                                                                                                                           <  1:847455/251‑1 (MQ=255)
                                                                                                               gatttagatttCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTa                                                                                                               >  1:290501/1‑251 (MQ=255)
                                                                                                                 tttagatttCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATc                                                                                                             <  1:278284/251‑1 (MQ=255)
                                                                                                                      atttCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAatat                                                                                                        <  1:682364/251‑1 (MQ=255)
                                                                                                                          ctcACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAg                                                                                                                           >  1:184025/1‑228 (MQ=255)
                                                                                                                          ctcACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTa                                                                                                     >  1:272525/1‑250 (MQ=255)
                                                                                                                          ctcACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGGGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAAt                                                                                                                                                     >  1:744576/1‑202 (MQ=255)
                                                                                                                            cacaAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCt                                                                                                  <  1:352761/251‑1 (MQ=255)
                                                                                                                                  gTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATAc                                                                                                                                                >  1:462509/1‑199 (MQ=255)
                                                                                                                                  gTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTa                                                                                                               >  1:225152/1‑232 (MQ=255)
                                                                                                                                  gTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTAc                                                                                             <  1:297557/250‑1 (MQ=255)
                                                                                                                                    gCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATAc                                                                                                                                                <  1:170343/197‑1 (MQ=255)
                                                                                                                                            gCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATAc                                                                                                                                                >  1:570558/1‑189 (MQ=255)
                                                                                                                                               ttttGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATAc                                                                                                                                                >  1:15147/1‑186 (MQ=255)
                                                                                                                                                       atatTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCt                                                                                                  <  1:27918/224‑1 (MQ=255)
                                                                                                                                                                 tGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCagaag                                                                                                                                                                                  >  1:382817/1‑134 (MQ=255)
                                                                                                                                                                     gATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAgt                                                                                                                                                                                            <  1:29549/120‑1 (MQ=255)
                                                                                                                                                                     gATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCagaag                                                                                                                                                                                  <  1:243647/130‑1 (MQ=255)
                                                                                                                                                                     gATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATAc                                                                                                                                                >  1:822979/1‑164 (MQ=255)
                                                                                                                                                                          aGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAg                                                                                                                           >  1:630908/1‑180 (MQ=255)
                                                                                                                                                                              atTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGggt                                                                                                                                                                                                                             >  1:468115/1‑78 (MQ=255)
                                                                                                                                                                              atTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAg                                                                      >  1:892621/1‑229 (MQ=255)
                                                                                                                                                                              actCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTa                                                                                                                                              <  1:203578/155‑1 (MQ=255)
                                                                                                                                                                                     aTCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGcac                                                                         <  1:702119/219‑1 (MQ=255)
                                                                                                                                                                                     aTCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAGGCTCAACAAAAATATATAc                                           <  1:829446/249‑1 (MQ=255)
                                                                                                                                                                                        aaaCAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAGGCTCAACAAAAATATATACAAt                                        >  1:555505/1‑249 (MQ=255)
                                                                                                                                                                                           caacaTTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAGGCTCAACAAAAATATATACAATCAAat                                   <  1:625903/251‑1 (MQ=255)
                                                                                                                                                                                                   gAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAg                                                                                                                           <  1:192486/155‑1 (MQ=255)
                                                                                                                                                                                                        atatCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGcc                                                                                                                     >  1:593801/1‑156 (MQ=255)
                                                                                                                                                                                                        atatCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAGGCTCAACAAAAATATATACAATCAAATATTTTGGATCTaa                      >  1:17047/1‑251 (MQ=255)
                                                                                                                                                                                                        atatCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATA‑TTACCTAGTACTGGAAAGCTATCTAAAGCACAAGGTATTTAAGCTCAACAAAAatttaaac                                           >  1:114384/1‑223 (MQ=255)
                                                                                                                                                                                                        atatCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGACACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGa                                                               >  1:361545/1‑210 (MQ=255)
                                                                                                                                                                                                          atCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGaa                                                                                        <  1:387420/183‑1 (MQ=255)
                                                                                                                                                                                                                ctaaGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAGGCTCAACAAAAATATATAc                                           >  1:654120/1‑222 (MQ=255)
                                                                                                                                                                                                                  aaGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAGGCTCAACAAAAATATATAc                                           >  1:217875/1‑220 (MQ=255)
                                                                                                                                                                                                                  aaGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGAGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAGGCTCAACAAAAATATATACAATCAAATATTTTGGATCTAACATTCAGTTa            >  1:611421/1‑251 (MQ=255)
                                                                                                                                                                                                                   aGCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAGGCTCAACAAAAATATATACAAt                                        <  1:621370/222‑1 (MQ=255)
                                                                                                                                                                                                                    gCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGa                                                               >  1:93349/1‑198 (MQ=255)
                                                                                                                                                                                                                    gCAAGGGACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAGGCTCAACAAAAATATATAc                                           <  1:291451/218‑1 (MQ=255)
                                                                                                                                                                                                                          gACTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATAc                                                                                                                                                >  1:191992/1‑111 (MQ=255)
                                                                                                                                                                                                                            cTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGaa                                                                                                                                                      <  1:626040/103‑1 (MQ=255)
                                                                                                                                                                                                                            cTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAg                                                                                                                           >  1:565708/1‑130 (MQ=255)
                                                                                                                                                                                                                            cTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGt                                                                                               >  1:567126/1‑158 (MQ=255)
                                                                                                                                                                                                                            cTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGaa                                                                                        >  1:104820/1‑165 (MQ=255)
                                                                                                                                                                                                                            cTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTGTCTAAGGCACAAGTTATTGAGGCTCAACAAAAATATATACAATCAAATATTTTGGATCTAACATTCAGTTATGAATTAGaa  >  1:450923/1‑251 (MQ=255)
                                                                                                                                                                                                                            cTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAg                                                              <  1:225337/191‑1 (MQ=255)
                                                                                                                                                                                                                            cTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAGGCTCAACAAAAatatat                                             >  1:231184/1‑208 (MQ=255)
                                                                                                                                                                                                                            cTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAGGCTCAACAAAAATATATAc                                           >  1:407361/1‑210 (MQ=255)
                                                                                                                                                                                                                            cTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAGGCTCAACAAAAATATATAc                                           >  1:856137/1‑210 (MQ=255)
                                                                                                                                                                                                                            cTATTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAGGCTCAACAAAAATATATACaa                                         >  1:178070/1‑212 (MQ=255)
                                                                                                                                                                                                                              aTTAGGGTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAg                                                              >  1:111719/1‑189 (MQ=255)
                                                                                                                                                                                                                                  gggTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAgg                                                                                                                                                                                                         >  1:861642/1‑46 (MQ=255)
                                                                                                                                                                                                                                  gggTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAgt                                                                                                                                                                                            <  1:598837/59‑1 (MQ=255)
                                                                                                                                                                                                                                  gggTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGAt                                                                                                                                    <  1:542318/115‑1 (MQ=255)
                                                                                                                                                                                                                                  gggTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAGGCTCAACAAAAATATATACAATCAAatat                                 >  1:826427/1‑214 (MQ=255)
                                                                                                                                                                                                                                   ggTTAGGAAAAGTGCTTATTTGGGTGGTAGTTTTGAATATAAAgg                                                                                                                                                                                                         >  1:423920/1‑45 (MQ=255)
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                     
GAGCTAAGAATTTCAGCACAAGACTTGATGATTATTATTGGACAAAATAATCATGGCAAATCTAATTTATTATCAGCGATTCTATTCTTTTTTGGTGAAATTAAACATCAAGATTTAGATTTCTCACAAGGTGCTCAAGAGCTTTTTGTTGATATTGAATTTGCTGATTTAGATATTCAAGATCAAACAACATTTGAAAAATATCTAACTAAGCAAGGGACTATTAGGGTTAGGAAAAGTGTTTATTTGGGTGGTAGTTTTGAATATAAAGGTTGGATACAAAGTTGTTCAGAAGACTTCCTAAAAGAAGAAAACGCTGGGAATTATACTAAGCGAGAGATCGCTAATAGTTTGCCTTTTTATCAATATTTACCTAGTACTGGAAAGCTATCTAAGGCACAAGTTATTGAGGCTCAACAAAAATATATACAATCAAATATTTTGGATCTAACATTCAGTTATGAATTAGAA  >  1/874514‑874984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑