| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 814,674 | T→C | M315V (ATG→GTG) | unknown ← | Lipopolysaccharide export system permease protein LptG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 814,674 | 0 | T | C | 100.0% | 192.2 / NA | 67 | M315V (ATG→GTG) | unknown | Lipopolysaccharide export system permease protein LptG |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (35/32); total (35/32) | |||||||||||
AAAGGAATATGTGTCAATTTCAAATATTTCATTTATTTTATGAATTGAATTAATGTGCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCATATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAGAAAGTAATGTAATTGGATAAACCGGAAATAGATAAAGAAGTTGGTCGTAACGACGCCACA > 1/814427‑814915 | aaaGGAATATGTGTCAATTTCAAATATTTCATTTATTTTATGAATTGAATTAATGTGCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAACACACTCGGCATCAGCGCGCCGCTAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCAcata > 1:453964/1‑251 (MQ=255) aGGAATATGTGTCAATTTCAAATATTTCATTTATTTTATGAATTGAATTAATGTGCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAg < 1:344030/250‑1 (MQ=255) ggAATATGTGTCAATTTCAAATATTTCATTTATTTTATGAATTGAATTAATGTGCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGaa > 1:720897/1‑251 (MQ=255) aaTATGTGTCAATTTCAAATATTTCATTTATTTTATGAATTGAATTAATGTGCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAAc < 1:324454/250‑1 (MQ=255) aaTATGTGTCAATTTCAAATATTTCATTTATTTTATGAATTGAATTAATGTGCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAAc < 1:39597/250‑1 (MQ=255) aaTATGTGTCAATTTCAAATATTTCATTTATTTTATGAATTGAATTAATGTGCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAAc < 1:279967/250‑1 (MQ=255) tgtgTCAATTTCAAATATTTCATTTATTTTATGAATTGAATTAATGTGCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGaa < 1:576538/251‑1 (MQ=255) aTTTCAAATATTTCATTTATTTTATGAATTGAATTAATGTGCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGaa > 1:161935/1‑244 (MQ=255) aTTTCAAATATTTCATTTATTTTATGAATTGAATTAATGTGCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAg > 1:895264/1‑251 (MQ=255) tattttatGAATTGAATTAATGTGCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAAc < 1:306548/222‑1 (MQ=255) gaattgaattAATGTGCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGgcg > 1:707629/1‑250 (MQ=255) gaattAATGTGCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATACGGATACGGGCGCCTGc > 1:681863/1‑250 (MQ=255) gaattAATGTGCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCa > 1:597954/1‑251 (MQ=255) tgtgCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGc < 1:720639/251‑1 (MQ=255) gtgCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGa < 1:458791/199‑1 (MQ=255) tgCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTg < 1:119198/251‑1 (MQ=255) aaaCAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAATAGGa < 1:242424/200‑1 (MQ=255) aaaCAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCa > 1:195389/1‑251 (MQ=255) aCAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAAc < 1:230720/251‑1 (MQ=255) cAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACg > 1:813037/1‑251 (MQ=255) aTGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGa > 1:901877/1‑179 (MQ=255) aTGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAAc < 1:432598/181‑1 (MQ=255) aTGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACggg > 1:472909/1‑215 (MQ=255) aTGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATaa > 1:628199/1‑251 (MQ=255) gTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACgg > 1:64740/1‑238 (MQ=255) gTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAg > 1:385750/1‑251 (MQ=255) tCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGAc < 1:320629/251‑1 (MQ=255) tCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGAc < 1:773324/251‑1 (MQ=255) cTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACggg > 1:262329/1‑203 (MQ=255) ttAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGc < 1:805133/216‑1 (MQ=255) tAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCGACGGTCCGAAAATAAAGGACAGCGCCAAca < 1:775691/251‑1 (MQ=255) aaaaaCAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAAcat < 1:408195/251‑1 (MQ=255) gCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAAc > 1:570747/1‑215 (MQ=255) gCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATg > 1:832812/1‑251 (MQ=255) cATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAAcatcatcat < 1:387838/249‑1 (MQ=255) ttttttATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGaaaa < 1:562565/222‑1 (MQ=255) cTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCgg > 1:298296/1‑250 (MQ=255) gCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGaa > 1:787701/1‑251 (MQ=255) tAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAAc > 1:533928/1‑132 (MQ=255) tAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGAc > 1:559989/1‑207 (MQ=255) tAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGaataa > 1:510415/1‑251 (MQ=255) ccAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGt < 1:678884/250‑1 (MQ=255) aacaacCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCaa > 1:359125/1‑170 (MQ=255) caacCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATg > 1:138284/1‑205 (MQ=255) atTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAAc > 1:386346/1‑96 (MQ=255) gAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTc > 1:13760/1‑188 (MQ=255) cTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAAcatcatcat > 1:546872/1‑173 (MQ=255) cATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAg < 1:741032/250‑1 (MQ=255) cATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAGa < 1:112904/251‑1 (MQ=255) ccGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAAc > 1:597840/1‑66 (MQ=255) gATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGCCCGAAAATAAAGGAc < 1:735743/139‑1 (MQ=255) gtggtgTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAGAAAGTAATGTAATTGGATAAAc > 1:795693/1‑250 (MQ=255) gtgtTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAg < 1:603181/225‑1 (MQ=255) gtgtTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAGAAAGTAATGTAATTGGATAAACCGGa > 1:606145/1‑251 (MQ=255) gtgtTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACT‑CAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAGAAAGTAATGTAATTGGATAAACCGGaa > 1:879258/1‑251 (MQ=255) gtTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTcc < 1:42091/210‑1 (MQ=255) gtTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCtt < 1:697846/220‑1 (MQ=255) gtTATAAACTAAACTGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAGAAAGTAATGTAATTGGa > 1:582569/1‑240 (MQ=255) aaactaaactGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAGAAAGTAATGTAATTGGATAAACCGGAAATAGAt < 1:99202/251‑1 (MQ=255) ctGAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGtct < 1:614484/202‑1 (MQ=255) gAATTTACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAGAAAg > 1:759899/1‑212 (MQ=255) ttACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAGaa > 1:239308/1‑206 (MQ=255) tACCAAATAATTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAGAAAGTAATGTAATTGGATAAACCGGAAATAGATAAAGAAGTTGGTCGt < 1:503814/251‑1 (MQ=255) ataatTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAGAAAGTAATGTAATTGGATAAACCGGAAATAGATAAAGAAGTTGGTCGTAacga > 1:10125/1‑250 (MQ=255) aatTCATTCACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAGAAAgtaatg < 1:299452/204‑1 (MQ=255) attcattcACCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAGAAAGTAATGTAATTGGATAAACCGGAAAt < 1:211785/223‑1 (MQ=255) cattcaCCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAGAAAGTAATGTAATTGGATAAACCGGAAATAGATAAAGAAGTTGGTCGTAACGACGCcaca > 1:569163/1‑251 (MQ=255) attcaCCACATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTgg < 1:545405/167‑1 (MQ=255) | AAAGGAATATGTGTCAATTTCAAATATTTCATTTATTTTATGAATTGAATTAATGTGCGAAACAAAAGCCCGCGATGTATCACGGGCTTTAAAAACAGCATTTTTTATGACCGCACTTTTGCCTAATTACGTCGTCGTGCCAACAACCACCAAGTGATGATTAGGAACAGCACACTCGGCATCAGCGCGCCGATAAGCGGCGTGGTGTTATAAACTAAACTGAATTTACCAAATAATTCATTCACCATATAGAACAGGAAGCCGAAGCAAATCCCGATAAGGATACGGGCGCCTGCAGTCACGCTGCGCAACGGTCCGAAAATAAAGGACAGCGCCAACATCATCATGACTCCAACCGAAATCGGCTGGAATAATTTACGCCAATAGGTTAGCTCGAAATTTTTGGAATCCTGTCCCGTCTCCCTTAAGAAAGTAATGTAATTGGATAAACCGGAAATAGATAAAGAAGTTGGTCGTAACGACGCCACA > 1/814427‑814915 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |