| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 791,359 | T→G | L78F (TTA→TTC) | unknown ← | Multidrug efflux system EmrAB‑OMF, membrane fusion component EmrA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 791,359 | 0 | T | G | 100.0% | 240.3 / NA | 82 | L78F (TTA→TTC) | unknown | Multidrug efflux system EmrAB‑OMF, membrane fusion component EmrA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (43/39); total (43/39) | |||||||||||
TGCAGCGATTCTTTATCAATTGCGCCGCTTTTCCCCAGCATTTCACGACGCGCTAAGTCACCCTGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACTAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATACCTAATGCTTTTCGGCGTGTGTTTTTTGATTTTTCAACTTGTGGTTGGCTTACTTCGCTCATTTATTATCC > 1/791123‑791601 | tGCAGCGATTCTTTATCAATTGCGCCGCTTTTCCCCAGCATTTCACGACGCGCTAAGTCACCCTGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTc < 1:309550/251‑1 (MQ=255) aTTCTTTATCAATTGCGCCGCTTTTCCCCAGCATTTCACGACGCGCTAAGTCACCCTGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTa > 1:676307/1‑251 (MQ=255) ttGCGCCGCTTTTCCCCAGCATTTCACGACGCGCTAAGTCACCCTGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGcaca > 1:230990/1‑251 (MQ=255) cTTTTCCCCAGCATTTCACGACGCGCTAAGTCACCCTGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGCGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGc < 1:820333/251‑1 (MQ=255) gCATTTCACGACGCGCTAAGTCACCCTGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCatat > 1:76860/1‑210 (MQ=255) acgCGCTAAGTCACCCTGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAatcatc < 1:371746/250‑1 (MQ=255) gcgcTAAGTCACCCTGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGc < 1:801580/229‑1 (MQ=255) gcgcTAAGTCACCCTGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGCAATCATCAc > 1:449296/1‑250 (MQ=255) gcgcTAAGTCACCCTGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAAtcatca > 1:178299/1‑249 (MQ=255) tAAGTCACCCTGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGAt < 1:541238/251‑1 (MQ=255) tCACCCTGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGcc < 1:877934/251‑1 (MQ=255) aCCCTGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCa > 1:613738/1‑250 (MQ=255) cccTGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCa > 1:527917/1‑249 (MQ=255) cccTGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCa > 1:366395/1‑249 (MQ=255) tGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATATCCCAGTTGTGAAATTTGATGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTAc < 1:423101/251‑1 (MQ=255) tACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTCCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACAt < 1:197602/251‑1 (MQ=255) aCTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGaaa < 1:420228/226‑1 (MQ=255) aCTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACAt < 1:731561/250‑1 (MQ=255) aCTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATa > 1:595838/1‑251 (MQ=255) aCTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATa > 1:491303/1‑251 (MQ=255) aCTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATa > 1:472745/1‑251 (MQ=255) aCTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATa > 1:746982/1‑251 (MQ=255) tATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAGGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCa < 1:27797/251‑1 (MQ=255) aTTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAatcatc > 1:217734/1‑226 (MQ=255) aTTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTAc > 1:624447/1‑243 (MQ=255) aTTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCAt > 1:548281/1‑251 (MQ=255) gTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGcc > 1:127271/1‑232 (MQ=255) cAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGt < 1:218722/250‑1 (MQ=255) aTTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGAt < 1:668992/251‑1 (MQ=255) aCGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTAc < 1:197284/251‑1 (MQ=255) gCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGc > 1:767439/1‑218 (MQ=255) cTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTATGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAg < 1:447329/208‑1 (MQ=255) gTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCa > 1:824697/1‑209 (MQ=255) tttGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTAc < 1:151452/250‑1 (MQ=255) tttGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTAc < 1:497840/250‑1 (MQ=255) tttGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTAc < 1:428676/250‑1 (MQ=255) ttGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAg < 1:648290/251‑1 (MQ=255) aCTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTc < 1:549265/250‑1 (MQ=255) cTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAg > 1:27191/1‑200 (MQ=255) cTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTccc < 1:504837/251‑2 (MQ=255) cTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTcc > 1:457691/1‑250 (MQ=255) cTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCg > 1:362595/1‑251 (MQ=255) gTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAgg < 1:419274/220‑1 (MQ=255) gTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAg > 1:279144/1‑245 (MQ=255) gTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTcc > 1:519249/1‑248 (MQ=255) gTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCg > 1:182287/1‑249 (MQ=255) gTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCg > 1:419386/1‑249 (MQ=255) gTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGACGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCg > 1:672480/1‑249 (MQ=255) gTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATAC‑TCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTc > 1:514346/1‑246 (MQ=255) gcccAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTGCCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTAc < 1:238502/237‑1 (MQ=255) aCCCAGTTGTGAAATTTGACGTACGGTGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCa < 1:426144/196‑1 (MQ=255) gTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCa < 1:328473/191‑1 (MQ=255) ttGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGAGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCt < 1:208773/249‑1 (MQ=255) gcgcTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGc < 1:666117/170‑1 (MQ=255) gcgcTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCa > 1:531653/1‑171 (MQ=255) tGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGaaaa > 1:764675/1‑251 (MQ=255) tGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGaaaa > 1:238127/1‑251 (MQ=255) aTTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATACCTAATg > 1:341517/1‑251 (MQ=255) ttttGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATACCTAATGc < 1:289545/251‑1 (MQ=255) cTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATACCTAATGCTTTTCgg < 1:539666/251‑1 (MQ=255) gCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAg > 1:320881/1‑189 (MQ=255) gAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCa > 1:833029/1‑142 (MQ=255) ttGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATACCTAATGCTTTTCGGCGTGTGTTTTTTGa < 1:454920/249‑1 (MQ=255) aaTCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTAc > 1:467468/1‑170 (MQ=255) tCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATACCTAATGCTTTTCGGCGTGTGTTTTTTGATTTTTCAAc < 1:266545/251‑1 (MQ=255) catcaAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTAc > 1:287460/1‑161 (MQ=255) catcaAGCTCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTc > 1:434438/1‑165 (MQ=255) tCCAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATACCTAATGCTTTTCGGCGTGTGTTTTTTGATTTTTCAACTTGTGGTTGGCTTAc < 1:245377/251‑1 (MQ=255) ccAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGt > 1:813824/1‑118 (MQ=255) ccAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATACCTAATGCTTTTc > 1:239370/1‑210 (MQ=255) cAGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATACCTAATGCTTTTCGGCGTGTGTTTTTTGATTTTTCAACTTGTGGTTGGCTTACtt > 1:14679/1‑251 (MQ=255) aGTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATACCTAATGCTTTTCGGCGTGTGTTTTTTGATTTTTCAACTTGTgg < 1:643112/239‑1 (MQ=255) gTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAAt > 1:141387/1‑181 (MQ=255) gTAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATAcc > 1:464099/1‑196 (MQ=255) tAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATACCTAATGCTTTTCGGCGTGTGTTTTTTGATTTTTCAACTTGTGGTTGGCTTACtt < 1:696521/248‑1 (MQ=255) tAATACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATACCTAATGCTTTTCGGCGTGTGTTTTTTGATTTTTCAACTTGTGGTTGGCTTACtt < 1:130924/248‑1 (MQ=255) aTACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTAc > 1:829934/1‑146 (MQ=255) tACATCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAgg < 1:824846/122‑1 (MQ=255) tCGCCGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATAc > 1:126940/1‑187 (MQ=255) ccGGCGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATACCTAATGCTTTTCGGCGTGTGTTTTTTGATTTTTCAACTTGTGGTTGGCTTACTTCGCTCATttatta < 1:657545/251‑1 (MQ=255) cGTGAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATACCTAATGCTTTTCGGCGTGTGTTTTTTGATTTTTCAACTTGTGGTTGGCTTACTTCGCTCATTTATTATcc < 1:32253/250‑1 (MQ=255) gAACGAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATACCTAATGCTTTTCGGCGTGTGTTTTTTGATTTTTCAACTTGTGGTTGGCTTACtt < 1:549951/231‑1 (MQ=255) | TGCAGCGATTCTTTATCAATTGCGCCGCTTTTCCCCAGCATTTCACGACGCGCTAAGTCACCCTGTACTTTATTCAGTGCAATTTGATTGGCTTGAACGGTAGCTTCAAGCTGTTTGACTGTATAACCCAGTTGTGAAATTTGACGTACGGCGCTTGCCAAAGTATTTTGTGCTTGGCTGAAACTCAGTTGATAATCGGCATCATCAAGCTCCAGTAATACATCGCCGGCGTGAACTAAATCCATATTTTCCGCGTTAATTTGGCGCACATTACCGGCAATTTGTGCGGAAATCATCACTTGATTGCCACTTACATAGGCATCTTCGGTAGTTTGATAGGTTTTTACAAAAAAGAACCAGTACAGTCCGCTCAAGAAGCTAATAAGAATCAAAATAAAAAAGAAAATACCTAATGCTTTTCGGCGTGTGTTTTTTGATTTTTCAACTTGTGGTTGGCTTACTTCGCTCATTTATTATCC > 1/791123‑791601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |