| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 752,626 | C→T | A251A (GCC→GCT) | unknown → | Multidrug efflux transporter MdtK/NorM (MATE family) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 752,626 | 0 | C | T | 100.0% | 197.7 / NA | 73 | A251A (GCC→GCT) | unknown | Multidrug efflux transporter MdtK/NorM (MATE family) |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (40/33); total (40/33) | |||||||||||
GCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTATGGCAAATTGGGTGTGTCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTTCCCATTGCCATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCAACGACCATTTTGGTGGGGCAGCGTTTGGGTGAAAAATCCCCGGAAGGCGCAAAGCAGGTGACCTATTCTGCGCTGGTTATGGGGTTATTTATTGCGGTGATA > 1/752385‑752872 | gCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTtg > 1:371/1‑251 (MQ=255) gATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAGATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCtgtg > 1:423713/1‑251 (MQ=255) tCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGaa > 1:74295/1‑251 (MQ=255) ccTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCg > 1:266794/1‑231 (MQ=255) ccTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGc < 1:200338/237‑1 (MQ=255) ctTAATTATATTTTTATTTCCGGCAAATGTGGTTTGCCGGCTTTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTTTCTGTTGATGTTGGCATCCTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAg < 1:238474/241‑1 (MQ=255) tttacGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTa < 1:326364/251‑1 (MQ=255) acggCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTc < 1:746887/249‑1 (MQ=255) cggCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTAtt > 1:860582/2‑249 (MQ=255) gCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTa > 1:893695/1‑251 (MQ=255) gCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGT‑ATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTc < 1:409825/247‑1 (MQ=255) aaaTTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCttt < 1:370043/242‑1 (MQ=255) aaTTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCg > 1:848353/1‑251 (MQ=255) gggTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCtt > 1:638441/1‑251 (MQ=255) gtgccGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATgg < 1:98041/189‑1 (MQ=255) gtgccGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTggg > 1:378727/5‑251 (MQ=255) tgccGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGgc < 1:149423/248‑1 (MQ=255) ccGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGc < 1:262973/196‑1 (MQ=255) ggCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATgg > 1:355346/1‑172 (MQ=255) gCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAg > 1:527707/1‑189 (MQ=255) ggCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCATATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAAt > 1:288691/1‑251 (MQ=255) ggCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTggg > 1:309605/1‑224 (MQ=255) cGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAAt < 1:140124/251‑1 (MQ=255) aTTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGa < 1:596270/164‑1 (MQ=255) aTTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCgg < 1:883458/251‑1 (MQ=255) tAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTc < 1:799672/250‑1 (MQ=255) gggTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCg > 1:92201/1‑143 (MQ=255) gTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTAt < 1:97828/250‑1 (MQ=255) gATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTa > 1:490572/1‑251 (MQ=255) tgtgTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATg < 1:636237/251‑1 (MQ=255) cTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGTGTTGTGCTGTGAAGTAGCATTGTTCGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGc > 1:648681/1‑250 (MQ=255) cTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGc > 1:489722/1‑250 (MQ=255) gTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTa > 1:718372/1‑251 (MQ=255) gTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTa > 1:669520/1‑251 (MQ=255) aTGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGtc < 1:3069/251‑1 (MQ=255) tGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATAc > 1:712860/1‑220 (MQ=255) gTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAAcc > 1:854741/1‑157 (MQ=255) gTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGtct > 1:406082/1‑250 (MQ=255) gTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGtct > 1:709561/1‑250 (MQ=255) ggCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCt > 1:639422/1‑150 (MQ=255) ggCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCa > 1:585232/1‑193 (MQ=255) ggCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATg < 1:11524/235‑1 (MQ=255) cATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGc < 1:677921/251‑1 (MQ=255) cATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATAGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCgg < 1:474731/250‑1 (MQ=255) aCTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCt > 1:537091/1‑167 (MQ=255) aCTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTAt < 1:352775/225‑1 (MQ=255) aCTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGtc > 1:45276/1‑241 (MQ=255) aCTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCAt < 1:749096/250‑1 (MQ=255) cTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTAt < 1:167458/155‑1 (MQ=255) cTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTc < 1:765596/157‑1 (MQ=255) gTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCAt > 1:141198/1‑132 (MQ=255) gTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGc < 1:727937/184‑1 (MQ=255) gTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCa > 1:101833/1‑251 (MQ=255) gTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCa > 1:347526/1‑251 (MQ=255) gTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCa > 1:206304/1‑251 (MQ=255) aaaTCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGc < 1:753099/106‑1 (MQ=255) aaTCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCAACGACCATTTtggt < 1:201923/251‑1 (MQ=255) aTTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCgg < 1:1624/187‑1 (MQ=255) gTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTggg < 1:111962/137‑1 (MQ=255) cATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATAc < 1:290715/162‑1 (MQ=255) ttGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCAACGACCATTTTGGTGGGGCAGCGTTTGGGTGAAAAATCCCCGGAAgg > 1:449352/1‑250 (MQ=255) gAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCAACGACCATTTTGGTGGGGCAGCGTTTGGGTGAAAAATCCCCGGAAGGCGCAAAGCAgg > 1:628005/1‑251 (MQ=255) gACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCAACGACCATTTTGGTGGGGCAGCGTTTGGGTGaaaaa > 1:515004/1‑224 (MQ=255) acgcacgcTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCAACGACCATTTTGGTGGGGCAGCGTTTGGGTGAAAAATCCCCGGAAGGCGCAAAGCAGGTGAc < 1:178591/249‑1 (MQ=255) aaTTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCAACGACCATTTTGGTGGGGCAGCGTTTGGGTGAAAAATCCCCGGAAGGCGCAAAGCAGGTGACCTATTCTGCGCTGGtt < 1:69242/251‑1 (MQ=255) gCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCAACGACCATTTTGGTGGGGCAGCGTTTGGGTGAAAAATCCCCGGAAGGCGCAAAGCAGGTGACCTATTCTGCGCTGGTTATgg > 1:124461/1‑251 (MQ=255) gggTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTAt > 1:416905/1‑62 (MQ=255) tttccccATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCAACGACCATTTTGGTGGGGCAGCGTTTGGGTGAAAAATCCCCGGAAGGCGCAAAGCAGGTGACCTATTCTGCGCTGGTTATGGGGTTATTTATTg < 1:206454/247‑1 (MQ=255) ccccATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTAt > 1:822869/2‑125 (MQ=255) ccccATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCAACGACCATTTTGGTGGGGCAGCGTTTGGGTGAAAAATCCCCGGAAGGCGCAAAGCAGGTGACCTATTCTGCGCTGGTTATGGGGTTATTTATTGCgg > 1:900492/2‑251 (MQ=255) ccATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCAACGACCATTTTGGTGGGGCAGCGTTTGGGTGAAAAATCCCCGGAAGGCGCaa > 1:826680/1‑204 (MQ=255) ttGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGc < 1:59477/143‑1 (MQ=255) ttGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCAACGACCATTTTGGTGGGGCAGCGTTTGGGTGAAAAATCCCCGGAAGGCGCAAAGCAGGTGACCTATTCTGCGCTGGTTATGGGGTTATTTATTGCGGTGATa > 1:773778/1‑251 (MQ=255) | GCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTATGGCAAATTGGGTGTGTCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTTCCCATTGCCATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCAACGACCATTTTGGTGGGGCAGCGTTTGGGTGAAAAATCCCCGGAAGGCGCAAAGCAGGTGACCTATTCTGCGCTGGTTATGGGGTTATTTATTGCGGTGATA > 1/752385‑752872 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |