Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 752,441 T→C S190P (TCG→CCG)  unknown → Multidrug efflux transporter MdtK/NorM (MATE family)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1752,4410TC100.0% 177.7 / NA 66S190P (TCG→CCG) unknownMultidrug efflux transporter MdtK/NorM (MATE family)
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (31/35);  total (31/35)

GATTTATAGCAGCGATTTCGTACTACAAAAAATGGACATGGAACAACGCTTGGCGGACATTACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTATGGCAAATTGGGTGTGTCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTTCCCATTGCCATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTT  >  1/752203‑752684
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                   
gATTTATAGCAGCGATTTCGTACTACAAAAAATGGACATGGAACAACGCTTGGCGGACATTACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGgcg                                                                                                                                                                                                                                         >  1:826190/1‑251 (MQ=255)
gATTTATAGCAGCGATTTCGTACTACAAAAAATGGACATGGAACAACGCTTGGCGGACATTACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGgcg                                                                                                                                                                                                                                         >  1:485086/1‑251 (MQ=255)
 aTTTATAGCAGCGATTTCGTACTACAAAAAATGGACATGGAACAACGCTTGGCGGACATTACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGgcg                                                                                                                                                                                                                                         >  1:439368/1‑250 (MQ=255)
 aTTTATAGCAGCGATTTCGTACTACAAAAAATGGACATGGAACAACGCTTGGCGGACATTACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGgcg                                                                                                                                                                                                                                         >  1:6239/1‑250 (MQ=255)
              aTTTCGTACTACAAAAAATGGACATGGAACAACGCTTGGCGGACATTACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTgg                                                                                                                                                                                                                            >  1:782654/1‑250 (MQ=255)
              aTTTCGTACTACAAAAAATGGACATGGAACAACGCTTGGCGGACATTACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTgg                                                                                                                                                                                                                            >  1:295560/1‑250 (MQ=255)
               tttCGTACTACAAAAAATGGACATGGAACAACGCTTGGCGGACATTACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCa                                                                                                                                                                                                                          <  1:719904/251‑1 (MQ=255)
                                   aCATGGAACAACGCTTGGCGGACATTACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCt                                                                                                                                                                                                                                <  1:49766/225‑1 (MQ=255)
                                   aCATGGAACAACGCTTGGCGGACATTACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAAc                                                                                                                                                                                                      <  1:752264/251‑1 (MQ=255)
                                             acGCTTGGCGGACATTACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGAtgt                                                                                                                                                                                            >  1:436082/1‑251 (MQ=255)
                                              cGCTTGGCGGACATTACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGAtgtg                                                                                                                                                                                           <  1:700118/251‑1 (MQ=255)
                                                    gCGGACATTACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGt                                                                                                                                                                                      <  1:609479/250‑1 (MQ=255)
                                                         cATTACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGt                                                                                                                                                                                      <  1:644/245‑1 (MQ=255)
                                                          aTTACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGtt                                                                                                                                                                               <  1:262259/251‑1 (MQ=255)
                                                           ttACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTg                                                                                                                                                                              >  1:567513/1‑251 (MQ=255)
                                                               tATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCAt                                                                                                                                                                          <  1:508824/251‑1 (MQ=255)
                                                                 tCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATAc                                                                                                                                                                        <  1:224561/251‑1 (MQ=255)
                                                                    gTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTg                                                                                                                                                                      <  1:53651/250‑1 (MQ=255)
                                                                    gTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTg                                                                                                                                                                      <  1:477162/250‑1 (MQ=255)
                                                                    gTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTg                                                                                                                                                                      <  1:12072/250‑1 (MQ=255)
                                                                         ttGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCg                                                                                                                                                                <  1:670065/251‑1 (MQ=255)
                                                                         ttGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCg                                                                                                                                                                <  1:804952/251‑1 (MQ=255)
                                                                                    ggTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCg                                                                                                                                                                <  1:196464/240‑1 (MQ=255)
                                                                                     gTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATAc                                                                                                                                                                        <  1:517257/231‑1 (MQ=255)
                                                                                     gTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGaaaaa                                                                                                                                                       <  1:666131/248‑1 (MQ=255)
                                                                                     gTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCa                                                                                                                                                    >  1:99861/1‑251 (MQ=255)
                                                                                                  cGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAg                                                                                                                                       <  1:154280/251‑1 (MQ=255)
                                                                                                    ggCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCggg                                                                                                                                                              >  1:370089/1‑226 (MQ=255)
                                                                                                                   gTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGACCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATg                                                                                                                                                                  >  1:461630/1‑207 (MQ=255)
                                                                                                                       aTTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGaa                                                                                                                  <  1:375180/251‑1 (MQ=255)
                                                                                                                       aTTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGaa                                                                                                                  <  1:685837/251‑1 (MQ=255)
                                                                                                                                gttTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAAc                                                                                                                                                                                                      <  1:814243/158‑1 (MQ=255)
                                                                                                                                gttTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAAt                                                                                                         >  1:47134/1‑251 (MQ=255)
                                                                                                                                         aCGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGacgcacg                                                                                                >  1:391110/1‑251 (MQ=255)
                                                                                                                                          cGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCa                                                                                                                                                                                                               <  1:727227/139‑1 (MQ=255)
                                                                                                                                          cGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGacgcacgc                                                                                               <  1:645691/251‑1 (MQ=255)
                                                                                                                                            gCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGacgcacg                                                                                                >  1:113577/1‑248 (MQ=255)
                                                                                                                                                      aaCTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTg                                                                                    >  1:395344/1‑250 (MQ=255)
                                                                                                                                                                 cGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAAc                                                                                                                                                                                                      >  1:223480/1‑125 (MQ=255)
                                                                                                                                                                        gATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCg                                                                                                                                                                <  1:889892/156‑1 (MQ=255)
                                                                                                                                                                        gATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCa                                                                 >  1:291954/1‑251 (MQ=255)
                                                                                                                                                                            aCCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGc                                                             <  1:461352/251‑1 (MQ=255)
                                                                                                                                                                             ccTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTg                                                              >  1:163974/1‑249 (MQ=255)
                                                                                                                                                                                      gCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTtg                                                   >  1:371/1‑251 (MQ=255)
                                                                                                                                                                                        ttGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGc                                                             >  1:320600/1‑239 (MQ=255)
                                                                                                                                                                                             gATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAGATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCtgtg                                            >  1:423713/1‑251 (MQ=255)
                                                                                                                                                                                             gATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTg                                                                                                                    >  1:190999/1‑179 (MQ=255)
                                                                                                                                                                                               tCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGaa                                          >  1:74295/1‑251 (MQ=255)
                                                                                                                                                                                                  atatTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAgg                                                                                                                                      >  1:635929/1‑156 (MQ=255)
                                                                                                                                                                                                  atatTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTg                                                                                                                    <  1:598748/174‑1 (MQ=255)
                                                                                                                                                                                                  atatTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAg                                                                                                       <  1:688606/187‑1 (MQ=255)
                                                                                                                                                                                                  atatTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGacgca                                                                                                  <  1:608080/192‑1 (MQ=255)
                                                                                                                                                                                                       ccTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCg                                                      >  1:266794/1‑231 (MQ=255)
                                                                                                                                                                                                       ccTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGc                                                <  1:200338/237‑1 (MQ=255)
                                                                                                                                                                                                          ctTAATTATATTTTTATTTCCGGCAAATGTGGTTTGCCGGCTTTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTTTCTGTTGATGTTGGCATCCTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAg                                         <  1:238474/241‑1 (MQ=255)
                                                                                                                                                                                                            tAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGct                                                            <  1:355430/220‑2 (MQ=255)
                                                                                                                                                                                                                    tttttATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAAc                                                                                                                                                                                                      >  1:151374/1‑74 (MQ=255)
                                                                                                                                                                                                                          tttacGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTa               <  1:326364/251‑1 (MQ=255)
                                                                                                                                                                                                                             acggCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTc            <  1:746887/249‑1 (MQ=255)
                                                                                                                                                                                                                              cggCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTAtt             >  1:860582/2‑249 (MQ=255)
                                                                                                                                                                                                                                gCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTa         >  1:893695/1‑251 (MQ=255)
                                                                                                                                                                                                                                gCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGT‑ATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTc            <  1:409825/247‑1 (MQ=255)
                                                                                                                                                                                                                                  aaaTTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCttt                <  1:370043/242‑1 (MQ=255)
                                                                                                                                                                                                                                   aaTTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCg      >  1:848353/1‑251 (MQ=255)
                                                                                                                                                                                                                                       gggTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCtt  >  1:638441/1‑251 (MQ=255)
                                                                                                                                                                                                                                        ggTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCg                                                                                                                                                                >  1:323215/1‑92 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                   
GATTTATAGCAGCGATTTCGTACTACAAAAAATGGACATGGAACAACGCTTGGCGGACATTACTATCGGTTATTTGCACGCCATGGTTTGGGGCTTGCCGGGCTATTTGTTGATGGTGAATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTATGGCAAATTGGGTGTGTCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTTCCCATTGCCATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTT  >  1/752203‑752684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑