| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 690,891 | C→T | R535K (AGA→AAA) | unknown ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 690,891 | 0 | C | T | 100.0% | 35.9 / NA | 15 | R535K (AGA→AAA) | unknown | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (8/7); total (8/7) | |||||||||||
ACATTATAGTTAAGTTATTTGAGTTCGGGTTTAATAAATTTATATAAAATAATATTGGTGTTTTCATTGGCATCAATAAATTCAAGATAATCAGGTATATCTTTCTTATCTATTAATTTTTGAGCCATGATTTCTTTCCCCTTATATTTATCGGCTAAAACATTGGCAAAATTTTTCTCAATCAGAATATAATCCACATTATTTCTAATCAAGTATTTTTCTGCATCATCTGTATTAACTGACGTATAAAACCGCATTGTATCAGAATTTCCTCTTATATTTCTATGGTAAGGCGCAGAAATAGAAGCATTGGATGTTGTAGCAATAACGGCAGCACCTAAATCAATAGGAGGTAATATAATTTTATTTTCTAAATTGTTTTTATTAAGTAATTTTTTCGTCGCATAGTAGCTATTATTATATTTTTCGTCATAAATCT > 1/690687‑691125 | acattaTAGTTAAGTTATTTGAGTTCGGGTTTAATAAATTTATATAAAATAATATTGGTGTTTTCATTGGCATCAATAAATTCAAGATAATCAGGTATATCTTTCTTATCTATTAATTTTTGAGCCATGATTTCTTTCCCCTTATATTTATCGGCTAAAACATTGGCAAAATTTTTCTCAATCAGAATATAATCCACATTATTTTTAATCAAGTATTTTTc < 1:841356/221‑1 (MQ=255) ggTGTTTTCATTGGCATCAATAAATTCAAGATAATCAGGTATATCTTTCTTATCTATTAATTTTTGAGCCATGATTTCTTTCCCCTTATATTTATCGGCTAAAACATTGGCAAAATTTTTCTCAATCAGAATATAATCCACATTATTTTTAATCAAGTATTTTTCTGCATCATCTGTATTAACTGACGTATAAAACCGCATTGTATCAGAATTTCCTCTta > 1:37990/1‑221 (MQ=255) aGATAATCAGGTATATCTTTCTTATCTATTAATTTTTGAGCCATGATTTCTTTCCCCTTATATTTATCGGCTAAAACATTGGCAAAATTTTTCTCAATCAGAATATAATCCACATTATTTTTAATCAAGTATTTTTCTGCATCATCTGTATTAACTGACGTATAAAACCGCATTGTATCAGAATTTCCTCTTATATTTCTGTGGTAAGGCGCAGAAATAGAAGCATTGGATGTTGTAGCAATAACGgcag > 1:99260/1‑250 (MQ=255) ggTATATCTTTCTTATCTATTAATTTTTGAGCCATGATTTCTTTCCCCTTATATTTATCGGCTAAAACATTGGCAAAATTTTTCTCAATCAGAATATAATCCACATTATTTTTAATCAAGTATTTTTCTGCATCATCTGTAtt < 1:722431/143‑1 (MQ=255) ggTATATCTTTCTTATCTATTAATTTTTGAGCCATGATTTCTTTCCCCTTATATTTATCGGCTAAAACATTGGCAAAATTTTTCTCAATCAGAATATAATCCACATTATTTTTAATCAAGTATTTTTCTGCATCATCTGTATTAACTGACGTATAAAACCGCATTGTATCAGAATTTCCTCTTATATTTCTGTGGTAAGGCGCAGAAATAGAAGCATTGGATGTTGTAGCAATAACGgc > 1:546466/1‑239 (MQ=255) tatCTTTCTTATCTATTAATTTTTGAGCCATGATTTCTTTCCCCTTATATTTATCGGCTAAAACATTGGCAAAATTTTTCTCAATCAGAATATAATCCACATTATTTTTAATCAAGTATTTTTCTGCATCATCTGTATTAACTGACGTATAAAACCGCATTGTATCAGAATTTCCTCTTATATTTCTGTGGTAAGGCGCAGAAATAGAAGTATTGGATGTTGTAGCAATAACGGCAGCACCTAAATCAATa < 1:273666/251‑1 (MQ=255) aTTTCTTTCCCCTTATATTTATCGGCTAAAACATTGGCAAAATTTTTCTCAATCAGAATATAATCCACATTATTTTTAATCAAGTATTTTTCTGCATCATCTGTATTAAc > 1:310685/1‑110 (MQ=255) tttcCCCTTATATTTATCGGCTAAAACATTGGCAAAATTTTTCTCAATCAGAATATAATCCACATTATTTTTAATCAAGTAGTTTTCTGCATCATCTGTATTAACTGACGTATAAAACCGCATTGTATCAGAATTTCCTCTTATATTTCTGTGGTAAGGCGCAGAAATAGAAGCATTGGATGTTGTAGCAATAACGGCAGCACCTAAATCAATAGGAGGTAATATAATTTTATTTTCTAAATTGTTTttat < 1:439739/251‑1 (MQ=255) cccTTATATTTATCGGCTAAAACATTGGCAAAATTTTTCTCAATCAGAATATAATCCACATTATTTTTAATCAAGTATTTTTCTGCATCATCTGTATTAACTGACGTATAAAACCGCATTGTATCAGAATTTCCTCTTATATTTCTGTGGTAAGGCGCAGAAATAGAAGCATTGGATGTTGTAGCAATAACGGCAGCACCTAAATCAATAGGAGGt > 1:556961/1‑216 (MQ=255) cccTTATATTTATCGGCTAAAACATTGGCAAAATTTTTCTCAATCAGAATATAATCCACATTATTTTTAATCAAGTATTTTTCTGCATCATCTGTATTAACTGACGTATAAAACCGCATTGTATCAGAATTTCCTCTTATATTTCTGTGGTAAGGCGCAGAAATAGAAGCATTGGATGTTGTAGCAATAACGGCAGCACCTAAATCAATAGGAGGTAatat > 1:139466/1‑221 (MQ=255) tCAGAATATAATCCACATTATTTTTAATCAAGTATTTTTCTGCATCATCTGTATTAACTGACGTATAAAACCGCATTGTATCAGAATTTCCTCTTATATTTCTGTGGTAAGGCGCAGAAATAGAAGCATTGGATGTTGTAGCAATAAc < 1:139765/148‑1 (MQ=255) ataATCCACATTATTTTTAATCAAGTATTTTTCTGCATCATCTGTATTAACTGACGTATAAAACCGCATTGTATCAGAATTTCCTCTTATATTTCTGTGGTAAGGCGCAGAAATAGAAGCATTGGATGTTGTAGCAATAACGGCAGCACCTAAATCAATAGGAGGTAATATAATTTTATTTTCTAAATTGTTTTTATTAAGTAATTTTTCCGTCGCATAGTAGCTATTATTATATTTTTCGTCATAAAtct < 1:527916/251‑1 (MQ=255) ccACATTATTTTTAATCAAGTATTTTTCTGCATCATCTGTATTAACt > 1:523466/1‑47 (MQ=255) ccACATTATTTTTAATCAAGTATTTTTCTGCATCATCTGTATTAACTGACGTATAAAACCGCATTGTATCAGaa > 1:689890/1‑74 (MQ=255) attTTTAATCAAGTATTTTTCTGCATCATCTGTATTAACTGACGTATAAAACCGCATTGTATCAGAATTTCCTCTTATATTTCTGTGGTAAGGCGCAGAAATAGAAGc < 1:721180/108‑1 (MQ=255) | ACATTATAGTTAAGTTATTTGAGTTCGGGTTTAATAAATTTATATAAAATAATATTGGTGTTTTCATTGGCATCAATAAATTCAAGATAATCAGGTATATCTTTCTTATCTATTAATTTTTGAGCCATGATTTCTTTCCCCTTATATTTATCGGCTAAAACATTGGCAAAATTTTTCTCAATCAGAATATAATCCACATTATTTCTAATCAAGTATTTTTCTGCATCATCTGTATTAACTGACGTATAAAACCGCATTGTATCAGAATTTCCTCTTATATTTCTATGGTAAGGCGCAGAAATAGAAGCATTGGATGTTGTAGCAATAACGGCAGCACCTAAATCAATAGGAGGTAATATAATTTTATTTTCTAAATTGTTTTTATTAAGTAATTTTTTCGTCGCATAGTAGCTATTATTATATTTTTCGTCATAAATCT > 1/690687‑691125 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |