Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 652,036 T→C M1M (ATG→GTG) † unknown ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1652,0360TC100.0% 191.8 / NA 70M1M (ATG→GTG) †unknownhypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (36/34);  total (36/34)

CATAGAGTTTCCTTATGACAGTTGAATTTTGAAAAACGTTACATTTTGCTGGTGCGCGTTTCCTAACGCGTGCCTGTAATATCAATAAGTTAAAAGCACGCGCTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCATAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGATTTTACCGCTCTTGCGGTCTTGCAGAGCGTTGATGATTTGGTCTTGGGTGAAGGTGTTGA  >  1/651795‑652273
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                  
cATAGAGTTTCCTTATGACAGTTGAATTTTGAAAAACGTTACATTTTGCTGGTGCGCGTTTCCTAACGCGTGCCTGTAATATCAATAAGTTAAAAGCACGCGCTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTc                                                                                                                                                                                                                                           <  1:573828/251‑1 (MQ=255)
          ccTTATGACAGTTGAATTTTGAAAAACGTTACATTTTGCTGGTGCGCGTTTCCTAACGCGTGCCTGTAATATCAATAAGTTAAAAGCACGCGCTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGGTTTAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCCGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGt‑t                                                                                                                                                                                                                               >  1:509388/1‑251 (MQ=255)
          ccTTATGACAGTTGAATTTTGAAAAACGTTACATTTTGCTGGTGCGCGTTTCCTAACGCGTGCCTGTAATATCAATAAGTTAAAAGCACGCGCTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑c                                                                                                                                                                                                                                     <  1:880841/246‑1 (MQ=255)
          ccTTATGACAGTTGAATTTTGAAAAACGTTACATTTTGCTGGTGCGCGTTTCCTAACGCGTGCCTGTAATATCAATAAGTTAAAAGCACGCGCTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCCGCTGTTTTTGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGt‑t                                                                                                                                                                                                                               >  1:302490/1‑251 (MQ=255)
               tGACAGTTGAATTTTGAAAAACGTTACATTTTGCTGGTGCGCGTTTCCTAACGCGTGCCTGTAATATCAATAAGTTAAAAGCACGCGCTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGc                                                                                                                                                                                                                          <  1:560495/251‑1 (MQ=255)
                           tttGAAAAACGTTACATTTTGCTGGTGCGCGTTTCCTAACGCGTGCCTGTAATATCAATAAGTTAAAAGCACGCGCTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTg                                                                                                                                                                                                              <  1:756043/251‑1 (MQ=255)
                                           ttttGCTGGTGCGCGTTTCCTAACGCGTGCCTGTAATATCAATAAGTTAAAAGCACGCGCTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTtc                                                                                                                                                                                              <  1:242446/251‑1 (MQ=255)
                                             ttGCTGGTGCGCGTTTCCTAACGCGTGCCTGTAATATCAATAAGTTAAAAGCACGCGCTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGtt                                                                                                                                                                                                                                            <  1:639449/205‑1 (MQ=255)
                                                          tttCCTAACGCGTGCCTGTAATATCAATAAGTTAAAAGCACGCGCTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTc                                                                                                                                                                              <  1:520299/250‑1 (MQ=255)
                                                                  cgcgTGCCTGTAATATCAATAAGTTAAAAGCACGCGCTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCAttt                                                                                                                                                                                                   <  1:67361/223‑1 (MQ=255)
                                                                        ccTGTAATATCAATAAGTTAAAAGCACGCGCTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGGTGGGTTCAT‑C‑GAAAAAATTGGGCAGGCACAGGACCTG‑CCCCTGCCGTTTTGGCATAGCGCAAGCATTCACAGCCTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTTTTCTCAAAAAAA‑A‑ATTCCAAAaacgacccca                                                                                                                                                                >  1:796962/1‑247 (MQ=255)
                                                                              atatCAATAAGTTAAAAGCACGCGCTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTCGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTcc                                                                                                                                                        <  1:123244/251‑1 (MQ=255)
                                                                                        gTTAAAAGCACGCGCTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAAATCGGGCAGGCACAGGACCTG‑CCCCCGCTGTTTTTGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGG‑TTAAGCATTTGGTGTTTGAACCTTCATTTTTTTTTCCAAAAAC‑A‑TTTCCAAAAACCACCCCA‑CTTTTCCATTAtttttt                                                                                                                                              >  1:208927/1‑248 (MQ=255)
                                                                                                    cgcTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGGTTTAT‑C‑GAAAAAATCGGGCAGGCACAGGACCTG‑CCCCCGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGG‑TTAAGCATTGGGTGTTTTGACCTTCATTTTTTTCTCAAAAAAA‑A‑TTTTCCAAACCGAACGCC‑CTTTTTCATTTTTTTTTCTACGttttcc                                                                                                                                   >  1:574506/1‑247 (MQ=255)
                                                                                                     gcTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTTAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCCGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGG‑TTTAGCATTGGATGTTTGAACCTTCATTTTTTTCTCAAAAAAC‑A‑ATTCCAAAACCGACCGCC‑CTTTTTCCTTATTTTTTTAACCTTTTcaca                                                                                                                                 >  1:660838/1‑251 (MQ=255)
                                                                                                     gcTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAc                                                                                                                                                                                     <  1:316204/202‑1 (MQ=255)
                                                                                                     gcTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CCGTGCCCGCCCGTTGGATTTAT‑CGGAAAAATT‑GGGGAGGCACAGGACCTG‑CCCCCGCTGTTTTTGCATAGCGCAAGCATTCACAACCTGTTCTGAT‑CAGGG‑TTTAGCATTTGATGTTTGAAACTTCATTTTTTTCTCAAAAAAA‑A‑ATTTCAAAACCGACCGCACCTTTTCC‑TTATTTCTTTAACGTTTTcaca                                                                                                                                 >  1:282356/1‑251 (MQ=255)
                                                                                                     gcTATGAAGCGTGCGCTATCAAAGGCGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCGCCCCCCCTGGGTTTATCC‑CAAAAATTC‑GGCAGGCCAAGGGCCCGTCCCCT‑TTGTTTTTGGATAACCCAAGCACTCACAACTTGTTCTGGT‑TAGGG‑TTAAGCCTTTGGTGTTTTAAACTTCATTTTGTTCTCTAAAAAA‑A‑TTTCCAAAACCTGCCGCA‑CCTTTCCCTTATTTTTTTGACGATTCcaca                                                                                                                                 >  1:803106/1‑251 (MQ=255)
                                                                                                      cTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACAt                                                                                                                                <  1:741888/251‑1 (MQ=255)
                                                                                                      cTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CCCTGCCCGCCCCTTGGCTTTAT‑C‑TTAAAAATCTCGCCGGGACCAGAGCCG‑CCCCCGCTGTTTTTGCGTAGCGCAAGCATTCACCGCTTGTTCTGAT‑CAGGG‑TTTAGCATTGGATGTTTGAAACCTCATTTTTTTTTCAAAAAAA‑A‑TTTCCAAAAACGACCGCA‑CTTTTCCATTATTTTTTCAACGttttcccaa                                                                                                                                >  1:390689/1‑245 (MQ=255)
                                                                                                      cTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGC‑G‑GTCTCCGTTTCCCCCCGGTTGTTTTAT‑T‑GAAAAAATCCGGCAGGCACACGACCTG‑CCCCCTCTGTTTTTGGGTAGCGCAAGGACTCACAGCTTTTTCTGGT‑CCGGTGTTAA‑CAATTGACGGTTGAACCCTCATTTTGTTTTCTAAAAAA‑A‑TTTCCAAAAACGACCGCC‑CCTTTCCATTATTTTTTCAAAGTTTCcacaa                                                                                                                                >  1:551403/1‑250 (MQ=255)
                                                                                                       tATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GGC‑CTGTGCCCCCCCGTTGGGTTCAT‑C‑GAAAAAATCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGG‑TTAAGCATTGGATGTTTTAACCCTCATTTTTTTTTCAAAAAAA‑A‑TTTCCAAAACCGACCGCA‑CTTTTTCCTTTTTTTTTTAACGTTTCCACATa                                                                                                                               >  1:426403/1‑251 (MQ=255)
                                                                                                                    cTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGGAGT‑‑CTGTTACCGCCCGGTGGGTTCAT‑C‑GAAAAATTTGGGGAGGAAAAGGGCCCG‑CCCCCGCTGTTTTTGGATAACGCAAACATTTTCAGCTTTTTCTGGT‑CAGGA‑TTGAGCATTTGAGGTTTGCAACTTCCTTTTTTTTTTAAAAAACAA‑TTTCCAAAA‑CGACCGCA‑CATTTCTATTTTTTTTTTAAAGCTTCTACAAAACCTGCCACAt                                                                                                                    >  1:119310/1‑249 (MQ=255)
                                                                                                                    cTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCt                                                                                                                  <  1:695978/251‑1 (MQ=255)
                                                                                                                    cTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCCGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGt‑t                                                                                                                                                                                                                               <  1:432288/145‑1 (MQ=255)
                                                                                                                    cTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCCCTGGATTCAT‑T‑GAAAAAATCGGGCAGGCACAGGACCTG‑CCCCCGCTGTTTTTGCATAGCGCAAGCATTTACAGCTTGTTCTGAT‑CAGGG‑TTTAGCATTGGGTGTTTTGACCTTCATTTTGTTTTCAAAAAAA‑ATTTTCCAAAACC‑ACCGCA‑CTTTTCCCTTTTTTTTTTAAAGTTTCCACATAACCttccccac                                                                                                                    >  1:21012/1‑242 (MQ=255)
                                                                                                                      aTCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAAATCGGGCAGGCACAGGACCTG‑CCCCCGCTGTTTTTGCATAACGCAAGCATTCACAGCCTGTTCTGAT‑CAGGT‑TTTAGCATTTGATGTTTg                                                                                                                                                                                                              >  1:547767/1‑160 (MQ=255)
                                                                                                                      aTCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CCGTGCCCGCCCGTTGGGTTCAT‑C‑GAAAAAATTGGGCAGGCCCAGGACCCG‑CCCCCGCTGTTTTTGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGG‑TTTAGCATTTGATGTTTTAACCCTCCTTTTGTTTTCAAAAAAA‑A‑TTTTCAAAACCCACCGCA‑CTTTTTCat                                                                                                                                                      >  1:727740/1‑213 (MQ=255)
                                                                                                                            ggTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCCCCCCGTGGATTCAT‑C‑GAAAAATTTGGGCAGGCACAGGACCCG‑CCCCCGCCGTTTTTGCATAGCGCAAGCATTCACAGCTTGTTCTTATCCGGGT‑TTAA‑CATTTGGTGTTTTAACCTTCATTTTTTTTTCAAAAAAA‑ATTTTCCAAAACC‑ACCGCACCTTTTCC‑TTATTTTTTTAACCTTTTcacaaaaccctcccccactttcctatt                                                                                                          >  1:185896/1‑228 (MQ=255)
                                                                                                                              tgtTTTTTTGTGTTTTCGCTTCGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATcc                                                                                                         <  1:559430/250‑1 (MQ=255)
                                                                                                                              tgtTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATcc                                                                                                         <  1:279316/250‑1 (MQ=255)
                                                                                                                                      tgtgTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTg                                                                                                <  1:376389/251‑1 (MQ=255)
                                                                                                                                      atgccaaaacagcaGGGGCAG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACAt                                                                                                                                >  1:262049/14‑219 (MQ=255)
                                                                                                                                                cgTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGAtt                                                                                      <  1:203552/251‑1 (MQ=255)
                                                                                                                                                cgTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGAtt                                                                                      <  1:289406/251‑1 (MQ=255)
                                                                                                                                                    ggggCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGc                                                                                                                                                                                                                          <  1:149391/118‑1 (MQ=255)
                                                                                                                                                    ggggCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCat                                                                                                             >  1:177763/1‑224 (MQ=255)
                                                                                                                                                     gggCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTgg                                                                                   <  1:494638/249‑1 (MQ=255)
                                                                                                                                                      ggCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGaag                                                                                                                                                                                                                  >  1:243203/1‑122 (MQ=255)
                                                                                                                                                          g‑gTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGtt                                                                            >  1:94900/1‑251 (MQ=255)
                                                                                                                                                            gTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCt                                                                                                                  <  1:147856/212‑1 (MQ=255)
                                                                                                                                                            gTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCt                                                                                                                  <  1:574127/212‑1 (MQ=255)
                                                                                                                                                            gTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTc                                                                                                    >  1:606436/1‑226 (MQ=255)
                                                                                                                                                            gTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGAtt                                                                                      <  1:490302/240‑1 (MQ=255)
                                                                                                                                                            gTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTg                                                                           >  1:160622/1‑251 (MQ=255)
                                                                                                                                                                  gtgCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCgg                                                                       >  1:799071/1‑250 (MQ=255)
                                                                                                                                                                       cgcccgTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCtt                                                                 >  1:495031/1‑251 (MQ=255)
                                                                                                                                                                         cccgTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACg                                                                                                                                         <  1:13680/177‑1 (MQ=255)
                                                                                                                                                                         cccgTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCg                                                               >  1:645109/1‑251 (MQ=255)
                                                                                                                                                                           cgTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGAt                                                             <  1:471509/251‑1 (MQ=255)
                                                                                                                                                                            gTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATcc                                                                                                         >  1:307597/1‑206 (MQ=255)
                                                                                                                                                                                                    ggcaggcaCAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGATTTTACCGCTCTTGCGGTCTTGCa                                      >  1:466226/1‑251 (MQ=255)
                                                                                                                                                                                                      caggcaCAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGATTTTACCGCTCTTGCGGTCTTGCag                                     <  1:238327/250‑1 (MQ=255)
                                                                                                                                                                                                         gcaCAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGATTTTACCGCTCTTGCGGTCTTGCagag                                   <  1:880061/249‑1 (MQ=255)
                                                                                                                                                                                                         gcaCAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGATTTTACCGCTCTTGCGGTCTTGCagag                                   >  1:875183/1‑249 (MQ=255)
                                                                                                                                                                                                                aCCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGATTTTACCGCTCTTGCGGTCTTGCAGAGCGTtgatg                           <  1:376788/250‑1 (MQ=255)
                                                                                                                                                                                                                      ccccTGCTGTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGATTTTACCGCTCTTGCGGTCTTGCAGAGCGTTGATGATTTgg                     >  1:358706/1‑251 (MQ=255)
                                                                                                                                                                                                                         ctgctgTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGATTTTACCGCTCTTGCGGTCTTGCAGAGCGTTGATGATTTGGTCt                  <  1:231267/251‑1 (MQ=255)
                                                                                                                                                                                                                         ctgctgTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGATTTTACCGCTCTTGCGGTCTTGCAGAGCGTTGATGATTTGGTCt                  <  1:567929/251‑1 (MQ=255)
                                                                                                                                                                                                                             tgTTTTGGCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCTGTTGCCGGCGCCTTCGATTTTACCGCTCTTGCGGTCTTGCAGAGCGTTGATGATTTGGTCTTggg              <  1:540341/251‑1 (MQ=255)
                                                                                                                                                                                                                                    gCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGATTTTACCGCTCTTGCGGTCTTGCAGAGCGTTGATGATTTGGTCTTGGGTGTAgg        <  1:449188/250‑1 (MQ=255)
                                                                                                                                                                                                                                    gCATAGCGCAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGATTTTACCGCTCTTGCGGTCTTGCAGAGCGTTGATGATTTGGTCTTGGGTGAAgg        <  1:449211/250‑1 (MQ=255)
                                                                                                                                                                                                                                         gcgcAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGATTTTACCGCTCTTGCGGTCTTGCAGAGCGTTGATGATTTGGTCTTGGGTGAAGGTGTtga  >  1:506349/1‑251 (MQ=255)
                                                                                                                                                                                                                                         gcgcAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGATTTTACCGCTCTTGCGGTCTTGCAGAGCGTTGATGATTTGGTCTTGGGTGAAGGTGTtga  >  1:268610/1‑251 (MQ=255)
                                                                                                                                                                                                                                         gcgcAAGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGATTTTACCGCTCTTGCGGTCTTGCAGAGCGTTGATGATTTGGTCTTGGGTGAAGGTGTtga  >  1:265137/1‑251 (MQ=255)
                                                                                                                                                                                                                                              aGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCat                                                                                                             >  1:557619/1‑139 (MQ=255)
                                                                                                                                                                                                                                              aGCATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTg                                                                                                >  1:86868/1‑152 (MQ=255)
                                                                                                                                                                                                                                                cATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGc                                                                                                  <  1:211427/148‑1 (MQ=255)
                                                                                                                                                                                                                                                cATTCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGgc                                                                      >  1:117362/1‑176 (MQ=255)
                                                                                                                                                                                                                                                  ttCACAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGATTTTAc                                                        >  1:321060/1‑188 (MQ=255)
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                  
CATAGAGTTTCCTTATGACAGTTGAATTTTGAAAAACGTTACATTTTGCTGGTGCGCGTTTCCTAACGCGTGCCTGTAATATCAATAAGTTAAAAGCACGCGCTATGAAGCGTGCGCTATCAAAGGTGTTTTTTTGTGTTTTCGCGTAGGGGCGG‑GTC‑CTGTGCCCGCCCGTTGGATTCAT‑C‑GAAAAATTCGGGCAGGCACAGGACCTG‑CCCCTGCTGTTTTGGCATAGCGCAAGCATTCATAGCTTGTTCTGAT‑CAGGT‑TTAAGCATTGGATGTTTGAACCTTCATTTTGTTCTCAAAAAAC‑A‑TTTCCAAAACCGACCGCA‑CTTTTCCATTATTTCTTCAACGTTTCCACATAGCCTGCCACATCTTGCATATCCTGTTCGCTGAGGGTGGATTTGGCGCGGTTGCCGGCGCCTTCGATTTTACCGCTCTTGCGGTCTTGCAGAGCGTTGATGATTTGGTCTTGGGTGAAGGTGTTGA  >  1/651795‑652273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑