| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 645,748 | T→C | P488P (CCT→CCC) | unknown → | ATP‑dependent helicase HrpA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 645,748 | 0 | T | C | 98.7% | 204.4 / NA | 77 | P488P (CCT→CCC) | unknown | ATP‑dependent helicase HrpA |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (28/48); total (28/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCATTTGTATTCGTCTTTATTCGGAAGACGATTTCAACAATCGCCCGGAATTTACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGCTATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGGCATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCTTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCTTGGCAAAAATGCTACTAAGTGCGGTCAATTTTTGCAGCGTTTATGAAGT > 1/645510‑645990 | gCATTTGTATTCGTCTTTATTCGGAAGACGATTTCAACAATCGCCCGGAATTTACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGt > 1:702270/1‑251 (MQ=255) gTATTCGTCTTTATTCGGAAGACGATTTCAACAATCGCCCGGAATTTACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTc > 1:344591/1‑250 (MQ=255) tCTTTATTCGGAAGACGATTTCAACAATCGCCCGGAATTTACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTccccc < 1:339053/247‑1 (MQ=255) aTTCGGAAGACGATTTCAACAATCGCCCGGAATTTACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAAc < 1:563789/249‑1 (MQ=255) ttCGGAAGACGATTTCAACAATCGCCCGGAATTTACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAgg < 1:769064/251‑1 (MQ=255) cGGAAGACGATTTCAACAATCGCCCGGAATTTACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAgggg < 1:742171/251‑1 (MQ=255) gAAGACGATTTCAACAATCGCCCGGAATTTACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGCAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAgggggg > 1:454942/1‑250 (MQ=255) caacaaTCGCCCGGAATTTACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTa < 1:231214/251‑1 (MQ=255) cGCCCGGAATTTACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATc < 1:181570/251‑1 (MQ=255) gCCCGGAATTTACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCa > 1:541026/1‑251 (MQ=255) ccGGAATTTACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCaga < 1:637738/251‑1 (MQ=255) gAATTTACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAAc < 1:527926/220‑1 (MQ=255) gAATTTACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAgggg < 1:738921/225‑1 (MQ=255) gAATTTACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATc < 1:222402/245‑1 (MQ=255) ttACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGa < 1:495214/251‑1 (MQ=255) ttACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGa < 1:525827/251‑1 (MQ=255) ttACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGa < 1:888539/251‑1 (MQ=255) cGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGGAGCCTTCCCATTCGTGGATGCACCGGATAAACGGCATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGGAAATCT‑CCCCCCTCCGCCTTCGGTGCTTCCACCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGctc < 1:411094/251‑1 (MQ=255) aCCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAgg < 1:218417/251‑1 (MQ=255) ttGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATc < 1:384957/251‑1 (MQ=255) gCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGTGGGATCTg > 1:42004/1‑250 (MQ=255) gTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGcc > 1:147602/1‑250 (MQ=255) aTTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGc < 1:461430/251‑1 (MQ=255) aTTTTGCAAATGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGc < 1:117252/251‑1 (MQ=255) aaaTGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAgggg < 1:606023/251‑1 (MQ=255) aaTGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAggggg < 1:276967/251‑1 (MQ=255) aaTGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAggggg > 1:458839/1‑251 (MQ=255) tGACGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAggggggg < 1:783634/251‑1 (MQ=255) cGGTGTTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAAt < 1:233624/251‑1 (MQ=255) gtgtTGGGTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAggggg > 1:848044/1‑166 (MQ=255) gTTTGGATGATATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAAc > 1:234460/1‑153 (MQ=255) atATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAg > 1:32710/2‑201 (MQ=255) atATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGaa > 1:7202/2‑232 (MQ=255) atATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGaa > 1:542910/2‑251 (MQ=255) aTTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGaaaa > 1:693197/1‑251 (MQ=255) gCCTTCCCGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATAc > 1:519697/1‑227 (MQ=255) ccGTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTcac < 1:341354/251‑1 (MQ=255) gTTCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACa > 1:498687/1‑184 (MQ=255) ttcggtgATGGACCGGATAAACGGCATATTCCGGGTGGGGTGAAATTGTTGGAAGGAGTGGGGGCGTTTGAATGGAAGGCCTA‑TCGCAAATCTGCCCCCTT‑CGCCTTCCGTTAGTCCCCCCCTTAACCGGGGGAGGGAAAGGGTATTTTATCAGGAGGAGGAACTTCGCTCCCCTCGTTTTCAAGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTcacac < 1:444494/244‑1 (MQ=255) ttCGTGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTtc > 1:637673/1‑244 (MQ=255) tGGATGCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGaa < 1:39958/135‑1 (MQ=255) gCACCGGATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTAttt > 1:223578/1‑139 (MQ=255) ggATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAGTGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAAGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCaa > 1:445562/1‑250 (MQ=255) ggATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGGAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAgg < 1:607284/194‑1 (MQ=255) ggATAAACGACATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAgg < 1:340012/194‑1 (MQ=255) atatTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTc < 1:601468/251‑1 (MQ=255) atTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAAc < 1:180868/100‑1 (MQ=255) atTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGctc > 1:745838/1‑144 (MQ=255) atTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAgg < 1:421728/174‑1 (MQ=255) atTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTcc < 1:162226/194‑1 (MQ=255) atTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACt < 1:496075/198‑1 (MQ=255) atTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCt < 1:509144/227‑1 (MQ=255) atTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTcc > 1:264396/1‑250 (MQ=255) gATGGCGTGTAATTTTTGGGAAAATTTGGGGCGTTGGAATTGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGt < 1:513589/248‑1 (MQ=255) gATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGt < 1:721227/248‑1 (MQ=255) gATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGt < 1:737963/248‑1 (MQ=255) tGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATc < 1:897138/251‑1 (MQ=255) gCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATc < 1:595172/115‑1 (MQ=255) tGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGc < 1:489510/251‑1 (MQ=255) aaaTTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCt < 1:656897/250‑1 (MQ=255) aaaTTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCt < 1:274565/250‑1 (MQ=255) aaaTTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCt < 1:173768/250‑1 (MQ=255) gaagaaTTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCTTGGCAAAAAt > 1:188644/1‑251 (MQ=255) gaaTTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAgg < 1:211685/154‑1 (MQ=255) ttGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCt < 1:800827/226‑1 (MQ=255) ttGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCTTGGCAAAAATGCTACTAAGTGCGGt > 1:161646/1‑251 (MQ=255) ttGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCTTGGCAAAAATGCTACTAAGTGCGGt > 1:838312/1‑251 (MQ=255) ggaaGG‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCTTGGCAAAAATGCTACTAAGTGCGGTCAAtttt > 1:531446/1‑251 (MQ=255) g‑CTATTCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCTTGGCAAAAATGCTACTAAGTGCGGTCAATTTTTGc < 1:434640/249‑1 (MQ=255) tCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCacacac > 1:30648/1‑169 (MQ=255) tCGCAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCTTGGCAAAAATGCTACTAAGTGCGGTCAATTTTTGCAGCGttt > 1:100586/1‑251 (MQ=255) cAAATCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCTTGGCAAAAATGCTACTAAGTGCGGTCAATTTTTGCAGCGTTTATg < 1:687521/251‑1 (MQ=255) aaaTCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCTTGGCAAAAATGCTACTAAGTGCGGTCAATTTTTGCAGCGTTTATGa < 1:866387/251‑1 (MQ=255) aaTCT‑CCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCTTGGCAAAAATGCTACTAAGTGCGGTCAATTTTTGCAGCGTTTATGaa < 1:46619/251‑1 (MQ=255) tct‑cCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGaa > 1:637848/1‑125 (MQ=255) tct‑cCCCCCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCTTGGCAAAAATGCTACTAAGTGCGGTCAATTTTTGCAGCGTTTATGAAGt < 1:114523/251‑1 (MQ=255) ccccCTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCt > 1:394710/1‑198 (MQ=255) | GCATTTGTATTCGTCTTTATTCGGAAGACGATTTCAACAATCGCCCGGAATTTACCGATCCGGAAATCCTGCGAACCAATTTGGCGTCGGTGATTTTGCAAATGACGGTGTTGGGTTTGGATGCTATTGAAGCCTTCCCGTTCGTGGATGCACCGGATAAACGGCATATTCAGGATGGCGTGAAATTGTTGGAAGAATTGGGGGCGTTGGAATGGAAGG‑CTATTCGCAAATCT‑CCCCCTTCCGCCTTCGGTACTTCCCCCCGTAAACAGGGGGAGGGAAAGGGTATTTTATCAGAAGAAGGATCTTCGCTCCCTCCGTTTACAGGGGGATCTGCCCGTAGGGCTGAGGGGGGGAATACTCCAACTTTCAAAGAAAAACGTGTTCTCACACACCTCGGTCGCCAACTCGCCCAGCTCCCAGTCGATCCATGCTTGGCAAAAATGCTACTAAGTGCGGTCAATTTTTGCAGCGTTTATGAAGT > 1/645510‑645990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |