| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 630,268 | T→C | intergenic (‑195/‑47) | unknown ← / → unknown | TRAP‑type transport system, periplasmic component, predicted N‑acetylneuraminate‑binding protein/N‑acetylmannosamine‑6‑phosphate 2‑epimerase (EC 5.1.3.9) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 630,268 | 0 | T | C | 100.0% | 61.2 / NA | 23 | intergenic (‑195/‑47) | unknown/unknown | TRAP‑type transport system, periplasmic component, predicted N‑acetylneuraminate‑binding protein/N‑acetylmannosamine‑6‑phosphate 2‑epimerase (EC 5.1.3.9) |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (15/8); total (15/8) | |||||||||||
CACCTAGTGCAATTGCAGTGGCAAGGAAAAGTTTGGCTAGTTTCATGGCTACACTCCTGTAGTAACAAATAATGAATATGGGATGTTTGAATTACAGCTCAGTTTGCATTCTAAAGTAAAAAAATCGTTTTTAAATAGAGAATGAAGCTTTATTTCAAAAATGAGAAGTAGATCACATAGTTGGAATATTACTTCAAAAAATATTTTAAAATGAAATTTTATTTTAGTAGAATGTCTCCATTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAACGGATTAATTGCCTCTTGTCAGCCGGTGGATGATGGTCCGATGGATAAACCGGAAATTGTCGCTGCTATGGCGCAGGCTTCCGTTATCGGCGGGGCGGCGGGGTTGCGCATTGAAGGTGTGGACAATTTAAAAGCCGTGC > 1/630028‑630510 | cacCTAGTGCAATTGCAGTGGCAAGGAAAAGTTTGGCTAGTTTCATGGCTACACTCCTGTAGTAACAAATAATGAATATGGGATGTTTGAATTACAGCTCAGTTTGCATTCTAAAGTAAAAAAATCGTTTTTAAATAGAGAATGAAGCTTTATTTCAAAAATGAGAAGTAGATCACATAGTTGGAATATTATTTCAAAAAATATTTTAAAATGAAATTTTATTTTAGTAGAATGTCTCCACTGACTAGAAt < 1:636916/251‑1 (MQ=255) cTCCTGTAGTAACAAATAATGAATATGGGATGTTTGAATTACAGCTCAGTTTGCATTCTAAAGTAAAAAAATCGTTTTTAAATAGAGAATGAAGCTTTATTTCAAAAATGAGAAGTAGATCACATAGTTGGAATATTATTTCAAAAAATATTTTAAAATGAAATTTTATTTTAGTAGAATGTCTCCACTGACt < 1:106523/193‑1 (MQ=255) cTCCTGTAGTAACAAATAATGAATATGGGATGTTTGAATTACAGCTCAGTTTGCATTCTAAAGTAAAAAAATCGTTTTTAAATAGAGAATGAAGCTTTATTTCAAAAATGAGAAGTAGATCACATAGTTGGAATATTATTTCAAAAAATATTTTAAAATGAAATTTTATTTTAGTAGAATGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCa > 1:71736/1‑251 (MQ=255) cTCCTGTAGTAACAAATAATGAATATGGGATGTTTGAATTACAGCTCAGTTTGCATTCTAAAGTAAAAAAATCGTTTTTAAATAGAGAATGAAGCTTTATTTCAAAAATGAGAAGTAGATCACATAGTTGGAATATTATTACAAAAAATATTTTAAAATGAAATTTTATTTTAGTAGAATGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCa > 1:237341/1‑251 (MQ=255) aaTATGGGATGTTTGAATTACAGCTCAGTTTGCATTCTAAAGTAAAAAAATCGTTTTTAAATAGAGAATGAAGCTTTATTTCAAAAATGAGAAGTAGATCACATAGTTGGAATATTATTTCAAAAAATATTTTAAAATGAAATTTTATTTTAGTAGAATGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAgaggag < 1:56457/208‑1 (MQ=255) tatGGGATGTTTGAATTACAGCTCAGTTTGCATTCTAAAGTAAAAAAATCGTTTTTAAATAGAGAATGAAGCTTTATTTCAAAAATGAGAAGTAGATCACATAGTTGGAATATTATTTCAAAAAATATTTTAAAATGAAATTTTATTTTAGTAGAATGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGttt > 1:771915/1‑251 (MQ=255) ttGCATTCTAAAGTAAAAAAATCGTTTTTAAATAGAGAATGAAGCTTTATTTCAAAAATGAGAAGTAGATCACATAGTTGGAATATTATTTCAAAAAATATTTTAAAATGAAATTTTATTTTAGTAGAATGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAACGGATTAATTg < 1:794681/251‑1 (MQ=255) gaATGAAGCTTTATTTCAAAAATGAGAAGTAGATCACATAGTTGGAATATTATTTCAAAAAATATTTTAAAATGAAATTTTATTTTAGTAGAATGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATg > 1:756924/1‑151 (MQ=255) gaATGAAGCTTTATTTCAAAAATGAGAAGTAGATCACATAGTTGGAATATTATTTCAAAAAATATTTTAAAATGAAATTTTATTTTAGTAGAATGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGcc > 1:390569/1‑184 (MQ=255) gCTTTATTTCAAAAATGAGAAGTAGATCACATAGTTGGAATATTATTTCAAAAAATATTTTAAAATGAAATTTTATTTTAGTAGAATGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAACGGATTAATTGCCTCTTGTCAGCCGGTGga > 1:388346/1‑227 (MQ=255) gTAGATCACATAGTTGGAATATTATTTCAAAAAATATTTTAAAATGAAATTTTATTTTAGTAGAATGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAAc < 1:718156/177‑1 (MQ=255) gTAGATCACATAGTTGGAATATTATTTCAAAAAATATTTTAAAATGAAATTTTATTTTAGTAGAATGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAACGGATTAATTGCCTCTTGTCAGCCGGTGGATGATGGTCCGATGGATAAACCGGAAATTGTCGCTGCTATGGCGCa > 1:387401/1‑251 (MQ=255) gTAGATCACATAGTTGGAATATTATTTCAAAAAATATTTTAAAATGAAATTTTATTTTAGTAGAATGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAACGGATTAATTGCCTCTTGTCAGCCGGTGGATGATGGTCCGATGGATAAACCGGAAATTGTCGCTGCTATGGCGCa > 1:45375/1‑251 (MQ=255) aTAGTTGGAATATTATTTCAAAAAATATTTTAAAATGAAATTTTATTTTAGTAGAATGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAACGGATTAATTGCCTCTTGTCAGCCGGTGGATGATGGTCCGATGGATAAACCGGAAATTGTCGCTGCTATGGCGCAGGCTTCCGt < 1:209759/251‑1 (MQ=255) aaaTGAAATTTTATTTTAGTAGAATGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAACGGATTAATTGCCTCTTGTCAGCCGGTGGATGATAGTCCGATGGATAAACCGGAAATTGTCGCTGCTATGGCGCAGGCTTCCGTTATcggcggggcggcgggggggggcattggag > 1:435298/1‑238 (MQ=255) attttaGTAGAATGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAACGGATTAATTGCCTCTTGTCAGCCGGTGGATGATGGTCCGATGGATAAACCGGAAATTGTCGCTGCTATGGCGCAGGCTTCCGTTATcggcgggggggggggggtgggccttttaggggggggcaatt > 1:652178/1‑226 (MQ=255) agtagAATGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAACGGATTAATTGCCTCTTGTCAGCCGGTGgatga > 1:51997/1‑151 (MQ=255) gAATGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAACGGATTAATTGCCTCTTGTCAGCCGGTGGATGATGGTCCGATGGATAAACCGGAAATTGTCGCTGCTATGGCGCAGGCTTCCGTTATCGGCGGGGCGGCGGGGGTGCGCATTGGAGGGGTGGGCAATTTaaaaagcg > 1:265338/1‑247 (MQ=255) tGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAACGGATTAATTGCCTCTTGTCAGCCGGTGGATGATGGTCCGATGGATAAACCGGAAATTGt > 1:544093/1‑171 (MQ=255) tGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAACGGATTAATTGCCTCTTGTCAGCCGGTGGATGATGGTCCGATGGATAAACCGGAAATTGTCGCTGCTATGGCGCAGGCTTCCGTTATcggcggggcggcgggggtgggcctttgaggtgtgggc > 1:216808/1‑214 (MQ=255) tGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAACGGATTAATTGCCTCTTGTCAGCCGGTGGATGATGGTCCGATGGATAAACCGGAAATTGTCGCTGCTATGGCGCAGGCTTCCGTTATCGGCGGGGCGGCGGGGTTGCGCATTGAAGGTGTGGAc < 1:134311/235‑1 (MQ=255) tGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAACGGATTAATTGCCTCTTGTCAGCCGGTGGATGATGGTCCGATGGATAAACCGGAAATTGTCGCTGCTATGGCGCAGGCTTCCGTTATCGGCGGGGCGGCGGGGTTGCGCATTGAAGGTGTGGACAATTTAAAAGc < 1:868139/246‑1 (MQ=255) tGTCTCCACTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAACGGATTAATTGCCTCTTGTCAGCCGGTGGATGATGGTCCGATGGATAAACCGGAAATTGTCGCTGCTATGGCGCAGGCTTCCGTTATCGGCGGGGCGGCGGGGGTGCGCCTTGGAGGGGGGGGCAATTTTAAAGACGTgg > 1:386460/1‑250 (MQ=255) | CACCTAGTGCAATTGCAGTGGCAAGGAAAAGTTTGGCTAGTTTCATGGCTACACTCCTGTAGTAACAAATAATGAATATGGGATGTTTGAATTACAGCTCAGTTTGCATTCTAAAGTAAAAAAATCGTTTTTAAATAGAGAATGAAGCTTTATTTCAAAAATGAGAAGTAGATCACATAGTTGGAATATTACTTCAAAAAATATTTTAAAATGAAATTTTATTTTAGTAGAATGTCTCCATTGACTAGAATGACTGCCAAATGCAGCCGCAAAAAAGAGGAGTTTCTATGTCACAGCTATCTCAAAAATTATCTCATCAAGCCGTTTTCGCCCAACTTCAGAACGGATTAATTGCCTCTTGTCAGCCGGTGGATGATGGTCCGATGGATAAACCGGAAATTGTCGCTGCTATGGCGCAGGCTTCCGTTATCGGCGGGGCGGCGGGGTTGCGCATTGAAGGTGTGGACAATTTAAAAGCCGTGC > 1/630028‑630510 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |