Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 627,830 T→C Q398Q (CAA→CAG)  unknown ← TRAP‑type transport system, small permease component, predicted N‑acetylneuraminate transporter / TRAP‑type transport system, large permease component, predicted N‑acetylneuraminate transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1627,8300TC100.0% 185.3 / NA 65Q398Q (CAA→CAG) unknownTRAP‑type transport system, small permease component, predicted N‑acetylneuraminate transporter / TRAP‑type transport system, large permease component, predicted N‑acetylneuraminate transporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (33/32);  total (33/32)

CCGAAGAAAGTTACCGTCATGATCATCAGGGCGACCACGCCGGTAATTGCCATGGCTTCCACACAGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGTTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATACTTGGCGGCACTAGTGGGCCGATGATACAGGAAGCCGCAGTGATACCACCACAAACGTCATCGTCATAACCTGCGT  >  1/627588‑628071
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                 
ccGAAGAAAGTTACCGTCATGATCATCAGGGCGACCACGCCGGTAATTGCCATGGCTTCCACACAGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTccc                                                                                                                                                                                                                                            <  1:604233/250‑1 (MQ=255)
         gTTACCGTCATGATCATCAGGGCGACCACGCCGGTAATTGCCATGGCTTCCACACAGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGtttt                                                                                                                                                                                                                                  >  1:12687/1‑251 (MQ=255)
         gTTACCGTCATGATCATCAGGGCGACCACGCCGGTAATTGCCATGGCTTCCACACAGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGtttt                                                                                                                                                                                                                                  >  1:74505/1‑251 (MQ=255)
              cGTCATGATCATCAGGGCGACCACGCCGGTAATTGCCATGGCTTCCACACAGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATg                                                                                                                                                                                                                             <  1:590652/251‑1 (MQ=255)
              cGTCATGATCATCAGGGCGACCACGCCGGTAATTGCCATGGCTTCCACACAGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATg                                                                                                                                                                                                                             <  1:692221/251‑1 (MQ=255)
               gTCATGATCATCAGGGCGACCACGCCGGTAATTGCCATGGCTTCCACACAGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTcc                                                                                                                                                                                                                                             <  1:774961/234‑1 (MQ=255)
                      tcatcaGGGCGACCACGCCGGTAATTGCCATGGCTTCCACACAGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGggtgg                                                                                                                                                                                                                                      >  1:804742/1‑234 (MQ=255)
                                         ggTAATTGCCATGGCTTCCACACAGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATg                                                                                                                                                                                                                             >  1:136670/1‑224 (MQ=255)
                                                     ggCTTCCACACAGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCa                                                                                                                                                                                      >  1:663523/1‑251 (MQ=255)
                                                       cTTCCACACAGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATa                                                                                                                                                                                    >  1:821840/1‑251 (MQ=255)
                                                          ccACACAGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGa                                                                                                                                                                                                                     <  1:888546/215‑1 (MQ=255)
                                                          ccACACAGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATAccc                                                                                                                                                                                 <  1:86007/251‑1 (MQ=255)
                                                          ccACACAGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACAGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGa                                                                                                                                                                                                                     >  1:260938/1‑215 (MQ=255)
                                                            acacaGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGc                                                                                                                                                                                                    <  1:45802/230‑1 (MQ=255)
                                                             cacaGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCAtt                                                                                                                                                                              <  1:252042/251‑1 (MQ=255)
                                                             cacaGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCAtt                                                                                                                                                                              <  1:237956/251‑1 (MQ=255)
                                                                    gTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGtt                                                                                                                                                                                        >  1:57599/1‑234 (MQ=255)
                                                                            gCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGa                                                                                                                                                                 >  1:210258/1‑249 (MQ=255)
                                                                               ttttAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAg                                                                                                                                                                                          <  1:388802/221‑1 (MQ=255)
                                                                               ttttAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAg                                                                                                                                                            <  1:806691/251‑1 (MQ=255)
                                                                                 ttAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGac                                                                                                                                                          <  1:88382/251‑1 (MQ=255)
                                                                                     gggTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACAcc                                                                                                                                                       >  1:475825/1‑250 (MQ=255)
                                                                                         aaGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGa                                                                                                                                                  <  1:213625/251‑1 (MQ=255)
                                                                                           gTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATAc                                                                                                                                                                                   >  1:286812/1‑216 (MQ=255)
                                                                                           gTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAg                                                                                                                                                            >  1:383641/1‑239 (MQ=255)
                                                                                           gTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATg                                                                                                                                                >  1:13633/1‑251 (MQ=255)
                                                                                           gTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATg                                                                                                                                                >  1:205348/1‑251 (MQ=255)
                                                                                              cTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGAt                                                                                                                                                                                                                              >  1:602860/1‑170 (MQ=255)
                                                                                               tttATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAg                                                                                                                                                                                          <  1:766387/205‑1 (MQ=255)
                                                                                                         aaTTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCaataaa                                                                                                                                  >  1:123863/1‑251 (MQ=255)
                                                                                                          aTTTACCGTTAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCaataaat                                                                                                                                 <  1:47502/251‑1 (MQ=255)
                                                                                                          aTTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCaataaat                                                                                                                                 <  1:13107/251‑1 (MQ=255)
                                                                                                                 gATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGt                                                                                                                              >  1:520602/1‑247 (MQ=255)
                                                                                                                 gATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTg                                                                                                                          >  1:382908/1‑251 (MQ=255)
                                                                                                                           gAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGa                                                                                                                                                                                                                     >  1:782011/1‑150 (MQ=255)
                                                                                                                             aTAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGata                                                                                                                                                                                                                   <  1:860894/150‑1 (MQ=255)
                                                                                                                                     ccGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGAt                                                                                                       <  1:330147/250‑1 (MQ=255)
                                                                                                                                     ccGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGAt                                                                                                       <  1:69442/250‑1 (MQ=255)
                                                                                                                                     ccGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATa                                                                                                      >  1:317165/1‑251 (MQ=255)
                                                                                                                                        ctactaCCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATGCCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACg                                                                                                   >  1:451040/1‑251 (MQ=255)
                                                                                                                                           ctacCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGa                                                                                                                                                                                                                     <  1:346752/134‑1 (MQ=255)
                                                                                                                                                    aTTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATg                                                                                          <  1:806788/248‑1 (MQ=255)
                                                                                                                                                    aTTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGAt                                                                                        <  1:276086/250‑1 (MQ=255)
                                                                                                                                                     ttCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCa                                                                                      <  1:572341/251‑1 (MQ=255)
                                                                                                                                                        tGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATgg                                                                                   <  1:798922/251‑1 (MQ=255)
                                                                                                                                                          tCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGc                                                                                  <  1:244390/250‑1 (MQ=255)
                                                                                                                                                               cTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATAc                                                                             <  1:474397/250‑1 (MQ=255)
                                                                                                                                                                        ccGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATACTTggc                                                                        >  1:741445/1‑246 (MQ=255)
                                                                                                                                                                               agaTACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATACTTGGCGGCACTAGTggg                                                            >  1:80570/1‑251 (MQ=255)
                                                                                                                                                                                 aTACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATACTTGGCGGCACTAGTGGGc                                                           <  1:731576/250‑1 (MQ=255)
                                                                                                                                                                                    ccaccGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCggg                                                                                                                                                                                                                                         >  1:408472/1‑73 (MQ=255)
                                                                                                                                                                                          aTAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAAc                                                                                                    >  1:250486/1‑200 (MQ=255)
                                                                                                                                                                                             aTCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATACTTGGCGGCACTAGTGGGCCGATGATACAg                                                >  1:241397/1‑249 (MQ=255)
                                                                                                                                                                                              tCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATACTTGGCGGCACTAGTGGGCCGATGATACAGGaa                                             <  1:604081/251‑1 (MQ=255)
                                                                                                                                                                                               cAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGa                                                                                                                                                                                                                     <  1:299460/82‑1 (MQ=255)
                                                                                                                                                                                                         gTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATACTTGGCGGCACTAGTGGGCCGATGATACAGGAAGCCGCAGTGAt                                  >  1:886917/1‑251 (MQ=255)
                                                                                                                                                                                                                       gAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATACTTGGCGGCACTAGTGGGCCGATGATACAGGAAGCCGCAGTg                                    >  1:408128/1‑235 (MQ=255)
                                                                                                                                                                                                                       gAATGCCCCTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAA‑GTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATAc                                                                             >  1:387999/1‑193 (MQ=255)
                                                                                                                                                                                                                              ccTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATACTTGGCGGCACTAGTGGGCCGATGATACAGGAAGCCGCAGTGATACCACCACAAAcgtcatcgt              >  1:760839/1‑250 (MQ=255)
                                                                                                                                                                                                                               cTTTAAAAGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATACTTGGCGGCACTAGTGGGCCGATGATACAGGAAGCCGCAGTGATACCACCACAAAcgtcatcgtca            >  1:205257/1‑251 (MQ=255)
                                                                                                                                                                                                                                    aaaGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATACTTGGCGGCACTAGTGGGCCGATGATACAGGAAGCCGCAGTGATACCACCACAAACGTCATCGTCATAAcc       <  1:57591/251‑1 (MQ=255)
                                                                                                                                                                                                                                    aaaGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATACTTGGCGGCACTAGTGGGCCGATGATACAGGAAGCCGCAGTGATACCACCACAAACGTCATCGTCATAAcc       <  1:104530/251‑1 (MQ=255)
                                                                                                                                                                                                                                    aaaGAGGCGCAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATACTTGGCGGCACTAGTGGGCCGATGATACAGGAAGCCGCAGTGATACCACCACAAACGTCATCGTCATAAcc       <  1:105553/251‑1 (MQ=255)
                                                                                                                                                                                                                                          gcgcAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATACTTGGCGGCACTAGTGGGCCGATGATACAGGAAGCCGCAGTGATACCACCACAAACGTCATCGTCATAACCTGCGt  >  1:562585/1‑250 (MQ=255)
                                                                                                                                                                                                                                          gcgcAAAGCTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATACTTGGCGGCACTAGTGGGCCGATGATACAGGAAGCCGCAGTGATACCACCACAAACGTCATCGTCATAACCTGCGt  >  1:437785/1‑250 (MQ=255)
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                 
CCGAAGAAAGTTACCGTCATGATCATCAGGGCGACCACGCCGGTAATTGCCATGGCTTCCACACAGCTGTTGAACAGCATTTTAAGGGTAAGTTCTTTATACACGAATTTACCGATAATGATGGAATAGAAGGCCGCTACTACCGCAGATTCTGTCGGGCTGAATAAACCGGAGAAGATACCACCGATAATCAATAACGGGGTTAAAATCGCCCAGAATGCCCCTTTAAAAGAGGCGCAAAGTTGCTCCCGGGTGGTTTTCGATGTTCTTGGATATCCGCGTTTTTTAGCAATGTAATAGTTCATACCCATTAGTGCGATGGTGACTAAGACACCCGGGATGAAGCCGGCAATAAATAGTTTTGCAATGGATTCGTTGGCGATAACGCCGTAAATGATCATGGCGATACTTGGCGGCACTAGTGGGCCGATGATACAGGAAGCCGCAGTGATACCACCACAAACGTCATCGTCATAACCTGCGT  >  1/627588‑628071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑