Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 626,017 T→C T340A (ACG→GCG)  unknown ← N‑acetylneuraminate epimerase (EC 5.1.3.24)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1626,0170TC100.0% 189.5 / NA 67T340A (ACG→GCG) unknownN‑acetylneuraminate epimerase (EC 5.1.3.24)
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (29/38);  total (29/38)

GCGTGGTATTAGCGGTGGCTTATTTTAAAACGGTTCCC‑TTGTTCCGTAAA‑TTTGTGCCCGCCACAATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTTGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGTAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAGCCCGCCATGGCACCCGCTAAACCGTCTTGGCTTTGCCCTTTTGGTGCCGGCAGATC  >  1/625779‑626260
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                   
gCGTGGTATTGGGGGTGTTTTATTTAAAAACGGTCCCT‑TTGTTCCGTAAT‑TTTGTGCCCGCCACAATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGc                                                                                                                                                                                                                                          <  1:817787/250‑1 (MQ=255)
 tgtgtttttgggggtgttttATTTAAAACCGGTTCCC‑TTGTTCCGTAAT‑TTTGTGCCCGCCACAATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGcc                                                                                                                                                                                                                                         <  1:528068/232‑1 (MQ=255)
 ggtggttttgggggtgttttATTTTAAAACGGTTCCT‑TTTTTCCATAAT‑TTTGTCCCCGCCACAATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGcc                                                                                                                                                                                                                                         <  1:77662/232‑1 (MQ=255)
    ggTATTAGCGGTGGCTTATTTTAAAACGGTTCCC‑TTGTTCCGTAAA‑TTTGTGCCCGCCACAATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAacac                                                                                                                                                                                                                                                >  1:390169/1‑240 (MQ=255)
     gTATTAGCGGTGGCTTATTTTAAAACGGTTCCC‑TTGTTCCGTAAA‑TTTGTGCCCGCCACAATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATa                                                                                                                                                                                                                                     >  1:488626/1‑250 (MQ=255)
     gTATTAGCGGTGGCTTATTTTAAAACGGTTCCC‑TTGTTCCGTAAA‑TTTGTGCCCGCCACAATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATa                                                                                                                                                                                                                                     >  1:218071/1‑250 (MQ=255)
      ttttggggggtgttttttttAAAAACGTTCCCTTTTTTCCTTAAT‑TTTGTCCCCGCCACAATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATAc                                                                                                                                                                                                                                    <  1:406660/235‑1 (MQ=255)
      tATTGGCGGTGGTTTTTTTAAAAACGGTCCCT‑TTTTTCATTAAT‑TTTGTGCCCGCCACAATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATAcc                                                                                                                                                                                                                                   <  1:406347/251‑1 (MQ=255)
                ggCTTATTTTAAAACGGTTCCC‑TTGTTCCGTAAA‑TTTGTGCCCGCCACAATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAAt                                                                                                                                                                                                                         >  1:298658/1‑251 (MQ=255)
                      ttttAAAACGGTTCCC‑TTGTTCCGTAAA‑TTTGTGCCCGCCACAATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCg                                                                                                                                                                                                                   >  1:55181/1‑251 (MQ=255)
                        ttAAAACGGGTCCC‑TTTTTTCCTAAATTTTGTCCCCGCCACAATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGa                                                                                                                                                                                                                  <  1:526309/251‑1 (MQ=255)
                                         gTTCCGTAAA‑TTTGTGCCCGCCACAATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCg                                                                                                                                                                                                 >  1:317904/1‑251 (MQ=255)
                                            ccGTAAA‑TTTGTGCCCGCCACAATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCgttg                                                                                                                                                                                              >  1:154378/1‑251 (MQ=255)
                                                    tttGTGCCCGCCACAATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAgg                                                                                                                                                                                       <  1:295454/251‑1 (MQ=255)
                                                                 caATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGc                                                                                                                                                                                                                                          >  1:142019/1‑187 (MQ=255)
                                                                 caATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATAc                                                                                                                                                                                                                                    >  1:609764/1‑193 (MQ=255)
                                                                 caATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATaa                                                                                                                                                                                                               >  1:237675/1‑214 (MQ=255)
                                                                      aCAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGcc                                                                                                                                                                     <  1:689489/251‑1 (MQ=255)
                                                                       cAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAacac                                                                                                                                                                                                                                                >  1:57089/1‑175 (MQ=255)
                                                                       cAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCa                                                                                                                                                                    >  1:859850/1‑251 (MQ=255)
                                                                                 ttAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTATTTTTTTGCCTTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCtt                                                                                                                                                          <  1:340846/251‑1 (MQ=255)
                                                                                 ttAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCtt                                                                                                                                                          <  1:882232/251‑1 (MQ=255)
                                                                                 ttAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCtt                                                                                                                                                          <  1:283336/251‑1 (MQ=255)
                                                                                 ttAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCtt                                                                                                                                                          <  1:357351/251‑1 (MQ=255)
                                                                                   acgccaatgacgtttAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGcc                                                                                                                                                                                                                                         <  1:16116/156‑1 (MQ=255)
                                                                                      cGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGc                                                                                                                                                      >  1:891321/1‑250 (MQ=255)
                                                                                        tCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCt                                                                                                                                                           <  1:891820/243‑1 (MQ=255)
                                                                                        tCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCtt                                                                                                                                                   >  1:601195/1‑251 (MQ=255)
                                                                                              gCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTggg                                                                                                                                             >  1:108390/1‑251 (MQ=255)
                                                                                                     ccTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTc                                                                                                                                                                             >  1:229851/1‑212 (MQ=255)
                                                                                                        tCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCAt                                                                                                                                   >  1:651962/1‑251 (MQ=255)
                                                                                                           ttttttACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGcc                                                                                                                                <  1:196792/251‑1 (MQ=255)
                                                                                                             ttttACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCgttg                                                                                                                                                                                              <  1:460827/187‑1 (MQ=255)
                                                                                                                      tttGACAGGTTATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAAtt                                                                                                                     <  1:661654/251‑1 (MQ=255)
                                                                                                                               ttATTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACgg                                                                                                            <  1:710336/251‑1 (MQ=255)
                                                                                                                                 aTTCGACACTTAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACgg                                                                                                            <  1:176206/249‑1 (MQ=255)
                                                                                                                                          ttAATTTTTTGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAg                                                                                                 <  1:811226/251‑1 (MQ=255)
                                                                                                                                                 tttGCCGTCGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTgcgc                                                                                          <  1:634410/251‑1 (MQ=255)
                                                                                                                                                       gtcgTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGcc                                                                                                                                                     <  1:56901/183‑1 (MQ=255)
                                                                                                                                                            aGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGttt                                                                                                                 >  1:892776/1‑217 (MQ=255)
                                                                                                                                                             gCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAAt                                                                                                                      >  1:737312/1‑211 (MQ=255)
                                                                                                                                                             gCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACgg                                                                                                            >  1:144056/1‑221 (MQ=255)
                                                                                                                                                                   gCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCATTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAg                                                                                                 <  1:438298/226‑1 (MQ=255)
                                                                                                                                                                      ttGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGcc                                                                     <  1:888886/251‑1 (MQ=255)
                                                                                                                                                                      ttGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGcc                                                                     <  1:41998/251‑1 (MQ=255)
                                                                                                                                                                        gTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCAc                                                                                                                                                                                                                     <  1:92511/105‑1 (MQ=255)
                                                                                                                                                                             gAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAAt                                                                                                                      >  1:725286/1‑195 (MQ=255)
                                                                                                                                                                               aGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATg                                                                       >  1:337299/1‑240 (MQ=255)
                                                                                                                                                                                 ttAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAg                                                          <  1:760156/251‑1 (MQ=255)
                                                                                                                                                                                      gCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAGccc                                                       <  1:899303/249‑1 (MQ=255)
                                                                                                                                                                                               ccgTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAGCCCGCCATGGCAc                                             <  1:488412/250‑1 (MQ=255)
                                                                                                                                                                                                      tttCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAGCCCGCCATGGCACCCGCTaaa                                     >  1:694621/1‑251 (MQ=255)
                                                                                                                                                                                                       ttCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACTGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATGTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAGCCCGCCATGGCACCCGCTAAAc                                    <  1:438357/251‑1 (MQ=255)
                                                                                                                                                                                                       ttCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAGCCCGCCATGGCACCCGCTAAAc                                    <  1:826331/251‑1 (MQ=255)
                                                                                                                                                                                                       ttCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAGCCCGCCATGGCACCCGCTAAAc                                    <  1:833527/251‑1 (MQ=255)
                                                                                                                                                                                                         caccacCGATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAGCCCGCCATGGCACCCGCTAAACCg                                  <  1:390000/251‑1 (MQ=255)
                                                                                                                                                                                                                gATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGc                                                                                                                                                                                                                                          <  1:750029/44‑1 (MQ=255)
                                                                                                                                                                                                                gATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATAcc                                                                                                                                                                                                                                   >  1:408654/1‑51 (MQ=255)
                                                                                                                                                                                                                gATTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAGCCCGCCATGGCACCCGCTAAACCGTCTTgg                            >  1:553385/1‑250 (MQ=255)
                                                                                                                                                                                                                 aTTAAAAGCACTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAGCCCGCCATGGCACCCGCTAAACCGTCTTGGc                           <  1:700821/250‑1 (MQ=255)
                                                                                                                                                                                                                          aCTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATaa                                                                                                                                                                                                               >  1:172966/1‑61 (MQ=255)
                                                                                                                                                                                                                           cTTGATTGTTGTAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAGCCCGCCATGGCACCCGCTAAACCGTCTTGGCTTTGccc                    >  1:757029/1‑247 (MQ=255)
                                                                                                                                                                                                                                  gttgtAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCttt                                                                                                                          >  1:250054/1‑138 (MQ=255)
                                                                                                                                                                                                                                   ttgtAAGACACCGCAACACCATAGGCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAGCCCGCCATGGCACCCGCTAAAc                                    <  1:541437/223‑1 (MQ=255)
                                                                                                                                                                                                                                   ttgtAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAGCCCGCCATGGCACCCGCTAAACCGTCTTGGCTTTGCCCTTTTGGTGCCgg        >  1:671173/1‑251 (MQ=255)
                                                                                                                                                                                                                                    tgtAAGACACCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAGCCCGCCATGGCACCCGCTAAACCGTCTTGGCTTTGCCCTTTTGGTGCCGGc       <  1:124542/251‑1 (MQ=255)
                                                                                                                                                                                                                                          acacCGCAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAGCCCGCCATGGCACCCGCTAAACCGTCTTGGCTTTGCCCTTTTGGTGCCGGCAGATc  <  1:31038/250‑1 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                   
GCGTGGTATTAGCGGTGGCTTATTTTAAAACGGTTCCC‑TTGTTCCGTAAA‑TTTGTGCCCGCCACAATAACAATGAAGGATTAAACGTCATTGGCGTAATCCTTCATTTTTTACGTCTTTGACAGGTTATTCGACACTTAATTTTTTGCCGTTGTAGCTCATGCTTTGTACGGAAGTTAAGGCTTTGCCGCCGTTGGTTTCACCACCGATTAAAAGCACTTGATTGTTGTAAGACACCGTAACACCATAGCCGATACCGGCAGGCAATTCACCGATAATTTGCCATTTACCGTTGTTTAAGGTGTAAATGTCTTTGTGCCAGGCCTTGCTTAAGCCTTTGTGGGCGTGAAGCATGCCTTCTTTGAATTGTTTTACGGAGCCCGGGAAGTTTGCGCCACCGGTGACTAAATAATGCCCGTGGCTATAGCCCGCCATGGCACCCGCTAAACCGTCTTGGCTTTGCCCTTTTGGTGCCGGCAGATC  >  1/625779‑626260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑