Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 624,477 T→C T393T (ACA→ACG)  unknown ← PTS system, N‑acetylglucosamine‑specific IIC component / PTS system, N‑acetylglucosamine‑specific IIB component (EC 2.7.1.193)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1624,4770TC100.0% 211.9 / NA 76T393T (ACA→ACG) unknownPTS system, N‑acetylglucosamine‑specific IIC component / PTS system, N‑acetylglucosamine‑specific IIB component (EC 2.7.1.193)
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (43/33);  total (43/33)

CTTCGGGGCCAAGAATCACTTGTAACCCGTCATTACCTAGTTTGACATTGCTTTTAGAACCGAGGGATTTGAGTTGTTCCTCGTTGATTTTATTTCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCTGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGCATACTGGCGGCGATAAATACGGAAATCCCGGTGAGTAATGCGTGCAATACATAAAGAATCGGCG  >  1/624230‑624721
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                    
cTTCGGGGCCAAGAATCACTTGTAACCCGTCATTACCTAGTTTGACATTGCTTTTAGAACCGAGGGATTTGAGTTGATCCTCGTTGATTTTATTTCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCcgtg                                                                                                                                                                                                                                                   >  1:679935/1‑251 (MQ=255)
                             tCATTACCTAGTTTGACATTGCTTTTAGAACCGAGGGATTTGAGTTGTTCCTCGTTGATTTTATTTCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTg                                                                                                                                                                                                                      >  1:854466/1‑251 (MQ=255)
                                        tttGACATTGCTTTTAGAACCGAGGGATTTGAGTTGTTCCTCGTTGATTTTATTTCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAAc                                                                                                                                                                                                           <  1:45929/251‑1 (MQ=255)
                                                tGCTTTTAGAACCGAGGGATTTGAGTTGTTCCTCGTTGATTTTATTTCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAacac                                                                                                                                                                                                    >  1:643154/1‑250 (MQ=255)
                                                tGCTTTTAGAACCGAGGGATTTGAGTTGTTCCTCGTTGATTTTATTTCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAacac                                                                                                                                                                                                    >  1:235836/1‑250 (MQ=255)
                                                   ttttAGAACCGAGGGATTTGAGTTGTTCCTCGTTGATTTTATTTCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCaaa                                                                                                                                                                                                >  1:332783/1‑251 (MQ=255)
                                                   ttttAGAACCGAGGGATTTGAGTTGTTCCTCGTTGATTTTATTTCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCaaa                                                                                                                                                                                                >  1:685405/1‑251 (MQ=255)
                                                      tAGAACCGAGGGATTTGAGTTGTTCCTCGTTGATTTTATTTCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAg                                                                                                                                                                                             <  1:752603/251‑1 (MQ=255)
                                                         aaCCGAGGGATTTGAGTTGTTCCTCGTTGATTTTATTTCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGt                                                                                                                                                                                            <  1:124044/249‑1 (MQ=255)
                                                                          tgttCCTCGTTGATTTTATTTCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTaa                                                                                                                                                                         <  1:814761/251‑1 (MQ=255)
                                                                            ttCCTCGTTGATTTTATTTCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAAc                                                                                                                                                                       <  1:460516/251‑1 (MQ=255)
                                                                              ccTCGTTGATTTTATTTCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAAc                                                                                                                                                                       >  1:432060/1‑249 (MQ=255)
                                                                                tCGTTGATTTTATTTCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTg                                                                                                                                                                   >  1:677964/1‑251 (MQ=255)
                                                                                      aTTTTATTTCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCAc                                                                                                                                                                >  1:23048/1‑248 (MQ=255)
                                                                                            tttCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACat                                                                                                                                                       <  1:442666/251‑1 (MQ=255)
                                                                                                 aTCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATAc                                                                                                                                                   <  1:594194/250‑1 (MQ=255)
                                                                                                 aTCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATAc                                                                                                                                                   <  1:150646/250‑1 (MQ=255)
                                                                                                  tCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGc                                                                                                                                                                                                                         <  1:348726/179‑1 (MQ=255)
                                                                                                   cAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCAc                                                                                                                                                                >  1:880231/1‑235 (MQ=255)
                                                                                                    aaCCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGt                                                                                                                                               >  1:560650/1‑251 (MQ=255)
                                                                                                     aCCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGt                                                                                                                                               >  1:369149/1‑250 (MQ=255)
                                                                                                          ggTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAAt                                                                                                                                                                                        >  1:392277/1‑204 (MQ=255)
                                                                                                           gTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATAcc                                                                                                                                                  >  1:618374/1‑241 (MQ=255)
                                                                                                                gcgcAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGc                                                                                                                                                                                     <  1:55756/201‑1 (MQ=255)
                                                                                                                   cAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTggg                                                                                                                                 <  1:516510/250‑1 (MQ=255)
                                                                                                                       cGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCg                                                                                                                            >  1:324568/1‑251 (MQ=255)
                                                                                                                        gggTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAACCGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCgg                                                                                                                           >  1:451505/1‑251 (MQ=255)
                                                                                                                        gggTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAg                                                                                                                                                                                             >  1:591606/1‑185 (MQ=255)
                                                                                                                        gggTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTaa                                                                                                                                                                         <  1:920/205‑1 (MQ=255)
                                                                                                                        gggTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCAc                                                                                                                                                                <  1:273811/214‑1 (MQ=255)
                                                                                                                        gggTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATAc                                                                                                                                                   <  1:772771/227‑1 (MQ=255)
                                                                                                                        gggTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCgg                                                                                                                           >  1:662072/1‑251 (MQ=255)
                                                                                                                         ggTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAg                                                                                                                                                                                                                           >  1:516981/1‑154 (MQ=255)
                                                                                                                         ggTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGt                                                                                                                                                                                            >  1:811912/1‑185 (MQ=255)
                                                                                                                           tAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAAc                                                                                                                                                                       <  1:66333/204‑1 (MQ=255)
                                                                                                                           tAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGggag                                                                                                                        >  1:899130/1‑251 (MQ=255)
                                                                                                                             aTACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAgg                                                                                                                                                                                                                          >  1:896813/1‑151 (MQ=255)
                                                                                                                             aTACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGggagga                                                                                                                      >  1:264301/1‑251 (MQ=255)
                                                                                                                                  ggCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACat                                                                                                                                                       <  1:112718/213‑1 (MQ=255)
                                                                                                                                  ggCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTa                                                                                                                 >  1:756144/1‑251 (MQ=255)
                                                                                                                                    cGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACat                                                                                                                                                       <  1:345158/211‑1 (MQ=255)
                                                                                                                                    cGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATAcc                                                                                                                                                  <  1:416407/216‑1 (MQ=255)
                                                                                                                                      tCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCat                                                                                                             <  1:103587/251‑1 (MQ=255)
                                                                                                                                        aaTGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCatat                                                                                                           <  1:34705/251‑1 (MQ=255)
                                                                                                                                           ggTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCggg                                                                                                                          >  1:203015/1‑233 (MQ=255)
                                                                                                                                            gTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCatat                                                                                                           >  1:97561/1‑247 (MQ=255)
                                                                                                                                                    aTTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATAcc                                                                                                                                                  >  1:552031/1‑200 (MQ=255)
                                                                                                                                                      tGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATAcc                                                                                                                                                  <  1:824357/198‑1 (MQ=255)
                                                                                                                                                               cGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAacac                                                                                                                                                                            <  1:408602/163‑1 (MQ=255)
                                                                                                                                                               cGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCg                                                                                    >  1:399782/1‑251 (MQ=255)
                                                                                                                                                                 ccTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTc                                                                                                                                              >  1:658619/1‑191 (MQ=255)
                                                                                                                                                                 ccTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGgga                                                                                                                         >  1:836714/1‑212 (MQ=255)
                                                                                                                                                                          tCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAAccatgggcatcac                                                                          <  1:88764/250‑12 (MQ=255)
                                                                                                                                                                              tAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAg                                                                     <  1:648927/251‑1 (MQ=255)
                                                                                                                                                                                 aTTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCaa                                                                                                    >  1:460927/1‑217 (MQ=255)
                                                                                                                                                                                 aTTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGc                                                                  <  1:372734/251‑1 (MQ=255)
                                                                                                                                                                                      aTCGCTCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGCATAc                                                              <  1:728617/250‑1 (MQ=255)
                                                                                                                                                                                              ttcttcACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACgg                                                                                                                                         >  1:204326/1‑167 (MQ=255)
                                                                                                                                                                                              ttcttcACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGc                                                                  >  1:102738/1‑238 (MQ=255)
                                                                                                                                                                                                cttcACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGCATACTGGCGGCGATa                                                   >  1:254036/1‑251 (MQ=255)
                                                                                                                                                                                                       ggATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATAcc                                                                                                                                                  <  1:889245/149‑1 (MQ=255)
                                                                                                                                                                                                       ggATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATccac                                                                                                       <  1:335662/192‑1 (MQ=255)
                                                                                                                                                                                                        gattgattGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGCATACTGGCGGCGATAAATACGGa                                           >  1:886350/1‑251 (MQ=255)
                                                                                                                                                                                                              ttgTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGCATACTGGCGGCGATAAATACGGAAATcc                                      >  1:620006/1‑250 (MQ=255)
                                                                                                                                                                                                               tgTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGCATACt                                                             <  1:721331/226‑1 (MQ=255)
                                                                                                                                                                                                                gTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACat                                                                                                                                                       <  1:697240/135‑1 (MQ=255)
                                                                                                                                                                                                                gTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCatat                                                                                                           <  1:654193/179‑1 (MQ=255)
                                                                                                                                                                                                                     cGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATAcc                                                                                                                                                  >  1:409593/1‑135 (MQ=255)
                                                                                                                                                                                                                           gTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCaa                                                                                                                                                                                                 >  1:511047/1‑82 (MQ=255)
                                                                                                                                                                                                                           gTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACat                                                                                                                                                       <  1:582902/124‑1 (MQ=255)
                                                                                                                                                                                                                           gTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGCATACt                                                             >  1:419194/1‑214 (MQ=255)
                                                                                                                                                                                                                           gTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGCATACTGGCGGCGATAAATACGGAAATCCCgg                                   <  1:135029/240‑1 (MQ=255)
                                                                                                                                                                                                                           gTGCAGGGACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGCATACTGGCGGCGATAAATACGGAAATCCCGGTGAGTAATGCg                        >  1:389019/1‑251 (MQ=255)
                                                                                                                                                                                                                                gggACGGATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCatat                                                                                                           >  1:21042/1‑163 (MQ=255)
                                                                                                                                                                                                                                      gATTCTTCCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGgga                                                                                                                         >  1:567802/1‑143 (MQ=255)
                                                                                                                                                                                                                                        ttcttccgtttcttccgtGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGTGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGCATACTGGCGGCGATAAATACGGAAATCCCGGTGAGTAATGCGTGCAATACATaaa           <  1:615418/251‑1 (MQ=255)
                                                                                                                                                                                                                                        ttcttccgtttcttccgtGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGCATACTGGCGGCGATAAATACGGAAATCCCGGTGAGTAATGCGTGCAATACATaaa           <  1:147736/251‑1 (MQ=255)
                                                                                                                                                                                                                                          cttcCGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGCATACTGGCGGCGATAAATACGGAAATCCCGGTGAGTAATGCGTGCAATACATAAAGa         >  1:113942/1‑251 (MQ=255)
                                                                                                                                                                                                                                             ccGTTTCTTCCGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGCATACTg                                                            >  1:388494/1‑197 (MQ=255)
                                                                                                                                                                                                                                                  tcttccGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGCATACTGGCGGCGATAAATACGGAAATCCCGGTGAGTAATGCGTGCAATACATAAAGAATCGgcg  >  1:124503/1‑250 (MQ=255)
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                    
CTTCGGGGCCAAGAATCACTTGTAACCCGTCATTACCTAGTTTGACATTGCTTTTAGAACCGAGGGATTTGAGTTGTTCCTCGTTGATTTTATTTCGATCAACCAAGGTTAAGCGCAAGCGGGTAATACAGGCGTCAATGGTTTTGAAATTGTCGGCACCGCCTAAAGCGTCGATAAATTTGATCGCCCTTTCTTCACGGGATTGATTGTTTACGCTTGGTGCAGGGACGGATTCTTCCGTTTCTTCTGTGCGACCGATGGTTTTTAAGTTAAAGGCTTGGATGGCAAAACGGAACACCAAATAGTAAATGGCGAAGAACACTAAACCTTGCACCGGTAACATATACCAGTCAACGGCGAGTGGGTTGCGGGAGGAAAGTACCATATCCACCAAACCGGCACTGAAACCGAAGCCTGCGATCCAGTGCATACTGGCGGCGATAAATACGGAAATCCCGGTGAGTAATGCGTGCAATACATAAAGAATCGGCG  >  1/624230‑624721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑