Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 612,050 C→T intergenic (‑48/+360) unknown ← / ← unknown hypothetical protein/DNA topoisomerase IV subunit B (EC 5.99.1.3)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1612,0500CT100.0% 210.9 / NA 79intergenic (‑48/+360)unknown/unknownhypothetical protein/DNA topoisomerase IV subunit B (EC 5.99.1.3)
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (36/43);  total (36/43)

ATTCTGTTGTCATTTGTAGTTCATATTTTGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTATTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCCATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTGAATTTGTAGGAAATTTTCGCTTTGTTTGAATCACGTAGTGGCGAGTTCGAAAATTTCCGTAAAGCAAATTCAGTGGAACAAGGGAAACAAGGGAAAGCAGGG  >  1/611806‑612287
                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                             
aTTCTGTTGTCATTTGTAGTTCATATTTTGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTattatt                                                                                                                                                                                                                                         >  1:453313/1‑251 (MQ=255)
 ttCTGTTGTCATTTGTAGTTCATATTTTGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCTAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTAttt                                                                                                                                                                                                                                        <  1:450054/251‑1 (MQ=255)
        gtCATTTGTAGTTCATATTTTGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGt                                                                                                                                                                                                                                 >  1:894497/1‑251 (MQ=255)
            tttGTAGTTCATATTTTGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTAtt                                                                                                                                                                                                                             >  1:296360/1‑251 (MQ=255)
                  gTTCATATTTTGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGaaa                                                                                                                                                                                                                       >  1:711646/1‑251 (MQ=255)
                   ttCATATTTTGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGaaa                                                                                                                                                                                                                       <  1:130569/250‑1 (MQ=255)
                   ttCATATTTTGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGaaa                                                                                                                                                                                                                       <  1:36064/250‑1 (MQ=255)
                   ttCATATTTTGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGaaa                                                                                                                                                                                                                       <  1:638094/250‑1 (MQ=255)
                   ttCATATTTTGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGaaa                                                                                                                                                                                                                       <  1:765465/250‑1 (MQ=255)
                   ttCATATTTTGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGaaa                                                                                                                                                                                                                       <  1:668129/250‑1 (MQ=255)
                       tatTTTGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGaaa                                                                                                                                                                                                                       <  1:27389/246‑1 (MQ=255)
                       tatTTTGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAg                                                                                                                                                                                                                     <  1:128239/248‑1 (MQ=255)
                       tatTTTGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGc                                                                                                                                                                                                                  <  1:336327/251‑1 (MQ=255)
                            tGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGtcg                                                                                                                                                                                                             <  1:139130/251‑3 (MQ=255)
                            tGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTg                                                                                                                                                                                                             <  1:139129/251‑1 (MQ=255)
                             ggTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTatta                                                                                                                                                                                                                                           <  1:285925/220‑1 (MQ=255)
                               ttGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGAt                                                                                                                                                                                                           <  1:44030/250‑1 (MQ=255)
                                 gtgtTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGaaa                                                                                                                                                                                                                       <  1:641259/236‑1 (MQ=255)
                                 gtgtTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGaaa                                                                                                                                                                                                                       >  1:776508/1‑236 (MQ=255)
                                          ggTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTAttt                                                                                                                                                                                                                                        <  1:554716/210‑1 (MQ=255)
                                          ggTTTCGCCTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATg                                                                                                                                                                                               >  1:294258/1‑251 (MQ=255)
                                                  cTGATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTttta                                                                                                                                                                                       <  1:198102/251‑1 (MQ=255)
                                                    gATGGGGCGAGTTACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTtttatt                                                                                                                                                                                     >  1:572154/1‑251 (MQ=255)
                                                               ttACTTTTCTTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGttttt                                                                                                                                                                                          <  1:793186/235‑1 (MQ=255)
                                                                    tttctttGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGc                                                                                                                                                                                                                  >  1:97892/5‑206 (MQ=255)
                                                                                 ccAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCAc                                                                                                                                                         <  1:308948/250‑1 (MQ=255)
                                                                                   aaaGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTatta                                                                                                                                                                                                                                           >  1:115404/1‑166 (MQ=255)
                                                                                       aaaaGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTag                                                                                                                                                   <  1:748124/250‑1 (MQ=255)
                                                                                        aaaGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTagag                                                                                                                                                 <  1:724914/251‑1 (MQ=255)
                                                                                               ccAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCtattta                                                                                                                                          >  1:577408/1‑251 (MQ=255)
                                                                                               ccAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCtattt                                                                                                                                           <  1:143688/250‑1 (MQ=255)
                                                                                                cAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCtatttat                                                                                                                                         <  1:769647/251‑1 (MQ=255)
                                                                                                  aaagaaagGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAAt                                                                                                                                                                  >  1:119205/1‑224 (MQ=255)
                                                                                                  aaagaaagGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTagag                                                                                                                                                 >  1:547844/1‑241 (MQ=255)
                                                                                                  aaagaaagGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTg                                                                                                                                       >  1:646143/1‑251 (MQ=255)
                                                                                                      aaagGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTggg                                                                                                                                     <  1:481464/249‑1 (MQ=255)
                                                                                                             aCCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCcttc                                                                                                                             <  1:179532/250‑1 (MQ=255)
                                                                                                               cccGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCttt                                                                                                                          <  1:84479/251‑1 (MQ=255)
                                                                                                                 cGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTgc                                                                                                                        <  1:193879/251‑1 (MQ=255)
                                                                                                                      aaaTTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGc                                                                                                                                                                                                                                   <  1:593418/139‑1 (MQ=255)
                                                                                                                           gCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTagag                                                                                                                                                 <  1:547192/216‑1 (MQ=255)
                                                                                                                           gCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTg                                                                                                                         <  1:465861/240‑1 (MQ=255)
                                                                                                                            cTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTgg                                                                                                             <  1:245884/251‑1 (MQ=255)
                                                                                                                               ttCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGt                                                                                                          <  1:205950/251‑1 (MQ=255)
                                                                                                                                    ctctTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGc                                                                                                                                                >  1:279405/1‑208 (MQ=255)
                                                                                                                                    ctctTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTGAAt                                                                                                     <  1:463381/251‑1 (MQ=255)
                                                                                                                                     ggttccactgaaTTTGCTTTACGGAAATTTTCGAACTCGCCACTACGTGATTCAAACAAAGCGAAAATTTCCTACAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        >  1:3150/11‑247 (MQ=37)
                                                                                                                                      gttccactgaaTTTGCTTTACGGAAATTTTCGAACTCGCCACTACGTGATTCAAACAAAGCGAAAATTTCCTACAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        >  1:232886/10‑246 (MQ=37)
                                                                                                                                      gttccactgaaTTTGCTTTACGGAAATTTTCGAACTCGCCACTACGTGATTCAAACAAAGCGAAAATTTCCTACAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        >  1:320111/10‑246 (MQ=37)
                                                                                                                                      gttccactgaaTTTGCTTTACGGAAATTTTCGAACTCGCCACTACGTGATTCAAACAAAGCGAAAATTTCCTACAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        >  1:305103/10‑246 (MQ=37)
                                                                                                                                                      ttcACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTGAATTTGTAGGAAATTTTCGCt                                                                                   <  1:522526/251‑1 (MQ=255)
                                                                                                                                                               attttcgAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        >  1:404990/7‑221 (MQ=255)
                                                                                                                                                               attttcgAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        >  1:289703/7‑221 (MQ=255)
                                                                                                                                                               attttcgAACTCGCCACTACGTGATTCAAACAAAGCGAAAATTTCCTACAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTg                                                                                                                                                                                                             <  1:248602/114‑1 (MQ=21)
                                                                                                                                                               attttcgAACTCGCCACTACGTGATTCAAACAAAGCGAAAATTTCCTACAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        >  1:844356/7‑221 (MQ=39)
                                                                                                                                                               attttcgAACTCGCCACTACGTGATTCAAACAAAGCGAAAATTTCCTACAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        >  1:532046/7‑221 (MQ=39)
                                                                                                                                                                ttttcgAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGtt                                                                                                         <  1:262054/214‑1 (MQ=255)
                                                                                                                                                                ttttcgAACTCGCCACTACGTGATTCAAACAAAGCGAAAATTTCCTACAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        >  1:801699/6‑220 (MQ=39)
                                                                                                                                                                ttttcgAACTCGCCACTACGTGATTCAAACAAAGCGAAAATTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCCCTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        >  1:424251/6‑220 (MQ=255)
                                                                                                                                                                ttttcgAACTCGCCACTACGTGATTCAAACAAAGCGAAAATTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        >  1:811624/6‑220 (MQ=255)
                                                                                                                                                                ttttcgAACTCGCCACTACGTGATTCAAACAAAGCGAAAATTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        >  1:601275/6‑220 (MQ=255)
                                                                                                                                                                ttttcgAACTCGCCACTACGTGATTCAAACAAAGCGAAAATTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        <  1:821958/215‑1 (MQ=255)
                                                                                                                                                                          cGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTgg                                                                                                                                      <  1:828521/180‑1 (MQ=255)
                                                                                                                                                                           gCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTggg                                                                                                                                     <  1:467154/180‑1 (MQ=255)
                                                                                                                                                                            ccACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCcttc                                                                                                                             <  1:409711/187‑1 (MQ=255)
                                                                                                                                                                            ccACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTGAATTTGTAGGAAATTTTCGCTTTGTTTGAATCACGTAGTGGCg                                                             >  1:472931/1‑251 (MQ=255)
                                                                                                                                                                            ccACTACGTGATTCAAACAAAGCGAAAATTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        <  1:37982/208‑1 (MQ=255)
                                                                                                                                                                            ccACTACGTGATTCAAACAAAGCGAAAATTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        >  1:402359/1‑208 (MQ=255)
                                                                                                                                                                                 aCGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAAt                                                                                                                                                                  <  1:328938/145‑1 (MQ=255)
                                                                                                                                                                                 aCGTGATTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        <  1:200584/203‑1 (MQ=255)
                                                                                                                                                                                     gattCAAACAAAGCGAAAATTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTg                                                                                                        >  1:57272/3‑199 (MQ=255)
                                                                                                                                                                                      gTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCtattat                                                                                                                                                                                                                                          >  1:560595/1‑68 (MQ=255)
                                                                                                                                                                                               aaGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTGAATTTGTAGGAAATTTTCGCTTTGTTTGAATCACGTAGTGGCGAGTTCGAAAATTTCCGTaa                                          >  1:233478/1‑251 (MQ=255)
                                                                                                                                                                                                                                   cAATTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTGAATTTGTAGGAAATTTTCGCTTTGTTTGAATCACGTAGTGGCGAGTTCGAAAATTTCCGTAAAGCAAATTCAGTGGAACAAGGGAAACAAGGGAAAg       >  1:723925/1‑250 (MQ=255)
                                                                                                                                                                                                                                     aTTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTGAATTTGTAGGAAATTTTCGCTTTGTTTGAATCACGTAGTGGCGAGTTCGAAAATTTCCGTAAAGCAAATTc                                 >  1:586905/1‑222 (MQ=255)
                                                                                                                                                                                                                                     aTTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTGAATTTGTAGGAAATTTTCGCTTTGTTTGAATCACGTAGTGGCGAGTTCGAAAATTTCCGTAAAGCAAATTCAGTGGaacaagggaaaca               >  1:854396/1‑240 (MQ=255)
                                                                                                                                                                                                                                     aTTTATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTGAATTTGTAGGAAATTTTCGCTTTGTTTGAATCACGTAGTGGCGAGTTCGAAAATTTCCGTAAAGCAAATTCAGTGGAACAAGGGAAACAAGGGAAAGCAg    >  1:203215/1‑251 (MQ=255)
                                                                                                                                                                                                                                      tttATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTGAATTTGTAGGAAATTTTCGCTTTGTTTGAATCACGTAGTGGCGAGTTCGAAAATTTCCGTAAAGCAAATTCAGTGGaacaaggg                    <  1:537733/234‑1 (MQ=255)
                                                                                                                                                                                                                                       ttATACGGGGACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTGAATTTGTAGGAAATTTTCGCTTTGTTTGAATCACGTAGTGGCGAGTTCGAAAATTTCCGTAAAGCAAATTCAGTGGAACAAGGGAAACAAGGGAAAGCAggg  >  1:526789/1‑251 (MQ=255)
                                                                                                                                                                                                                                                gACCTATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCcttc                                                                                                                             >  1:514249/1‑119 (MQ=255)
                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                             
ATTCTGTTGTCATTTGTAGTTCATATTTTGGTTGTGTTAATCGGTTTCGCCTGATGGGGCGAGTTACTTTTATTTGCTTCGCCAAAGAAAAGTAACCAAAAGAAAGGCGACCCCGGATAAATTGCTTTTCCTCTCTTAGCATTAATTTTCTTCACGGAAAATTTTGAACTCGCCACTACGTGGTTCAAACAAAGCAAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCCATTATTTCGAGCGTTATTCTGAAAAGTGCAGTTGATTTTTTTCGGATGTTTTTTTATTTAAAAAATGATTTTAAAATCGACCGCACTTTTAGAGCTATTTATTGGGTTCCCTTCTTTGCCGCCCTTGTGGAGTTGAATTTGTAGGAAATTTTCGCTTTGTTTGAATCACGTAGTGGCGAGTTCGAAAATTTCCGTAAAGCAAATTCAGTGGAACAAGGGAAACAAGGGAAAGCAGGG  >  1/611806‑612287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑