| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 564,724 | T→C | P158P (CCA→CCG) | unknown ← | Putative TEGT family carrier/transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 564,724 | 0 | T | C | 98.8% | 209.9 / NA | 81 | P158P (CCA→CCG) | unknown | Putative TEGT family carrier/transport protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (43/37); minor base G (0/1); total (43/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
AACGCCCCAAAAAAGGGGCGCTGCATTTATCTATTAAATTAATAATTAATCTCGGGAAGAGAAGAATGAAAGTAAGTTTAACAAGCTGATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCTGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTAAAATCGGTCCGACGGTATAACCCAAGAAGCCGGTAAAGGCGAAAG > 1/564490‑564962 | aaCGCCCCAAAAAAGGGGCGCTGCATTTATCTATTAAATTAATAATTAATCTCGGGAAGAGAAGAATGAAAGTAAGTTTAACAAGCTGATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGgaagaaga < 1:409808/251‑1 (MQ=255) aaaGGGGCGCTGCATTTATCTATTAAATTAATAATTAATCTCGGGAAGAGAAGAATGAAAGTAAGTTTAACAAGCTGATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATc < 1:170566/251‑1 (MQ=255) gCATTTATCTATTAAATTAATAATTAATCTCGGGAAGAGAAGAATGAAAGTAAGTTTAACAAGCTGATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGa > 1:501535/1‑217 (MQ=255) gCATTTATCTATTAAATTAATAATTAATCTCGGGAAGAGAAGAATGAAAGTAAGTTTAACAAGCTGATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGgaa < 1:378286/224‑1 (MQ=255) aTCTATTAAATTAATAATTAATCTCGGGAAGAGAAGAATGAAAGTAAGTTTAACAAGCTGATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAacac < 1:650699/251‑1 (MQ=255) aattaataattaatCTCGGGAAGAGAAGAATGAAAGTAAGTTTAACAAGCTGATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATa > 1:131248/1‑251 (MQ=255) taatCTCGGGAAGAGAAGAATGAAAGTAAGTTTAACAAGCTGATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAAt < 1:286376/251‑1 (MQ=255) taatCTCGGGAAGAGAAGAATGAAAGTAAGTTTAACAAGCTGATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAAt < 1:245505/251‑1 (MQ=255) atCTCGGGAAGAGAAGAATGAAAGTAAGTTTAACAAGCTGATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGGGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATgg > 1:147534/1‑251 (MQ=255) gagaagaATGAAAGTAAGTTTAACAAGCTGATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACt > 1:823657/1‑197 (MQ=255) taagtTTAACAAGCTGATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATAtc < 1:722254/249‑1 (MQ=255) aagtTTAACAAGCTGATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATAtcttt > 1:776797/1‑251 (MQ=255) aagtTTAACAAGCTGATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATAtcttt > 1:7363/1‑251 (MQ=255) gtTTAACAAGCTGATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATAtc > 1:873666/1‑246 (MQ=255) gATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGACGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATa > 1:423358/1‑251 (MQ=255) taaataaGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACa > 1:203315/1‑251 (MQ=255) ataaGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTa > 1:151635/1‑180 (MQ=255) aaGTTATAGATTGATGCGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGc < 1:727604/251‑1 (MQ=255) aaGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACAt < 1:62524/247‑1 (MQ=255) aaGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGc < 1:803067/251‑1 (MQ=255) aaGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGc < 1:184129/251‑1 (MQ=255) gTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTgg < 1:566422/161‑1 (MQ=255) gTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAacac < 1:351032/183‑1 (MQ=255) gTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAacac < 1:158973/183‑1 (MQ=255) gTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATAc < 1:282244/243‑1 (MQ=255) gTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATAc < 1:328049/243‑1 (MQ=255) gTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACa < 1:826269/244‑1 (MQ=255) taGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCa < 1:831916/251‑1 (MQ=255) gATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGAc > 1:193459/1‑205 (MQ=255) cGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGaa < 1:632260/175‑1 (MQ=255) cGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATAc > 1:625808/1‑229 (MQ=255) gAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAgg > 1:693671/1‑251 (MQ=255) aaTAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAacac < 1:646084/167‑1 (MQ=255) tAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGAt > 1:640112/1‑147 (MQ=255) aaCTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTa < 1:442147/156‑1 (MQ=255) tgtgGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTAc < 1:138793/251‑1 (MQ=255) cACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGc > 1:112179/1‑217 (MQ=255) cACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGcc < 1:537361/251‑1 (MQ=255) cACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGc > 1:893252/1‑250 (MQ=255) gAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAAt > 1:394233/1‑251 (MQ=255) gAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCACAGTACCCGCCAAt > 1:628873/1‑251 (MQ=255) aaTATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATg > 1:655297/1‑251 (MQ=255) aaTATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATg > 1:6753/1‑251 (MQ=255) ggTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGa > 1:356384/1‑251 (MQ=255) ccgccgcCGTGAATGATGTTGCTGGTTTCATACAGAATTCCAATGGTGGAGAAAACCACGAACAACGCACTGATACCTACAAAAAGCGCCGGGAATGGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACCCCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTAAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTCCCCGCCAATGCCAACACGATAGc < 1:573329/250‑1 (MQ=255) gTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCg > 1:246235/1‑202 (MQ=255) atgTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGt > 1:434691/1‑203 (MQ=255) atgTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCgg > 1:792686/1‑250 (MQ=255) atgTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCgg > 1:643662/1‑250 (MQ=255) tGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGAc < 1:818563/152‑1 (MQ=255) ggTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCag > 1:489130/1‑179 (MQ=255) gTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACa > 1:30944/1‑171 (MQ=255) gTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATa > 1:635780/1‑251 (MQ=255) aaTACAGAATCCCCATGGTGGAGAAAAACACAAACAACGCACTGATCCCTACAAAAAGCGCCGGAAATTGAAAAAAAAAACGGGCAATCATGCAAAGTAACAACACCACAAAAAAGGTAAAAAGGGTGCCGAAAAAGAAAGACATATCTTTTTTCGTGGTCAAAACATAGGCAGAGCATGCAAAGAAGGTCCCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCa < 1:858665/250‑1 (MQ=255) gAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTa < 1:593621/93‑1 (MQ=255) gAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTcaca > 1:213654/1‑239 (MQ=255) gAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAACATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTaaa > 1:428703/1‑251 (MQ=255) ttCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATAtc < 1:371169/139‑1 (MQ=255) ttCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTAAAAt > 1:61418/1‑250 (MQ=255) cccATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGc > 1:338499/1‑161 (MQ=255) gtggAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCAccc > 1:109305/1‑213 (MQ=255) gtggAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTAAAATCGGTCCGa > 1:507578/1‑250 (MQ=255) aaaaaTCACGAACAACGCACTGATACCTACAAAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTAAAATCGGTCCGACGGtat < 1:314117/250‑1 (MQ=255) tCACGAACAACGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTCCCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTAAAATCGGTCCGACGGTATAAccc < 1:735304/251‑1 (MQ=255) ccACGAACAACGCACTGATCCCTACAAAAAGCGCGGGGAATGGGAAGAAAAAACTGGCGATCATGCAAAGTAACAACCCCACGAAAAAGGCTAAAAGGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTCCCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTAAAATCGGTCCGACGGTATAAccc < 1:470541/250‑1 (MQ=255) acagcGCACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTAAAATCGGTCCGACGGTATAACCCaagaag > 1:448815/5‑251 (MQ=255) cACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAATGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTAAAATCGGTCCGACGGTATAACCCAAGAAGCCGGTa > 1:566619/1‑251 (MQ=255) cACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAgg > 1:37180/1‑132 (MQ=255) cACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCgaaga < 1:223689/147‑1 (MQ=255) cACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTAAAATCGGTCCGACGGTATAACCCAAGAAGCCGGTa > 1:235093/1‑251 (MQ=255) cACTGATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTAAAATCGGTCCGACGGTATAACCCAAGAAGCCGGTa > 1:510392/1‑251 (MQ=255) gatcccTACATAAAGCGCCGGAAATTGGAAGAAGAAACTGGCAATCATGCCAAGTAACAACACCACGAAAAAGGCAAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTAAAATCGGTCCGACGGTATAACCCaagaa < 1:452462/236‑1 (MQ=255) gATACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTAAAATCGGTCCGACGGTATAACCCAAGAAGCCGGTAAAgg > 1:724604/1‑251 (MQ=255) tACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAgg < 1:48355/126‑1 (MQ=255) tACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTaaaa > 1:468943/1‑213 (MQ=255) tACCTACATAAAGCGCCGGGAATTGGAAGAAGAAACGGGCGATCATGCCAAGTAACACCCCCACGAAGAAGGCAAAAAGGGGGCCGGACAAGAAAGACATATCTTTCTCCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTCCCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTAAAATCGGTCCGACGGTATAACCCAAGAAGCCGGTAAAGGCg < 1:432478/251‑1 (MQ=255) ccTACATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTAAAATCGGTCCGACGGTATAACCCAAGAAGCCGGTAAAGGCGaa > 1:609004/1‑251 (MQ=255) gcATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCa < 1:318810/146‑1 (MQ=255) aCATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGcc < 1:589698/156‑1 (MQ=255) aCATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTAAAATCGGTCCGACGGTATAACCCAAGAAGCCGGTAAAGGCGAAAg > 1:886239/1‑250 (MQ=255) cATAAAGCGCCGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTCCCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATAc < 1:85022/197‑1 (MQ=255) | AACGCCCCAAAAAAGGGGCGCTGCATTTATCTATTAAATTAATAATTAATCTCGGGAAGAGAAGAATGAAAGTAAGTTTAACAAGCTGATAAATAAGTTATAGATTGATACGAATAAACTTACTGTGGCACGAATATAGTTGGTTTCGCCGCCGTGAATGATGTTGCTGGTTTCATACAGAATTCCCATGGTGGAGAAAATCACGAACAACGCACTGATACCTACATAAAGCGCTGGGAATTGGAAGAAGAAACTGGCGATCATGCCAAGTAACAACACCACGAATAAGGCTAAAATGGTGCCGGACAAGAAAGACATATCTTTCTTCGTGGTCAATACATAGGCAGAGCATGCGAAGAAGGTCGCCGCAGTACCCGCCAATGCCAACACGATAGCATCACCCAAACCGGCACTCACATACGCATTTAAAATCGGTCCGACGGTATAACCCAAGAAGCCGGTAAAGGCGAAAG > 1/564490‑564962 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |