| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 562,686 | G→A | A152V (GCA→GTA) | unknown ← | Manganese ABC transporter, ATP‑binding protein SitB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 562,686 | 0 | G | A | 98.8% | 207.2 / NA | 80 | A152V (GCA→GTA) | unknown | Manganese ABC transporter, ATP‑binding protein SitB |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (37/42); minor base T (0/1); total (37/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAAGTAGTTTCGGTCAAACCTGCAGCGATTACCGTGCGGTTAATCATTACCACGCGATCACAAAAATCCGGCACGGAACCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATGCCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGCACATAAGACACTAAATTTTGTTTTAAGGCTTGTTTAATTG > 1/562452‑562929 | aaaGTAGTTTCGGTCAAACCTGCAGCGATTACCGTGCGGTTAATCATTACCACGCGATCACAAAAATCCGGCACGGAACCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGccc < 1:496271/251‑1 (MQ=255) aaCCTGCAGCGATTACCGTGCGGTTAATCATTACCACGCGATCACAAAAATCCGGCACGGAACCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGTCCTAATAAATCAATAATGGCGTTTTCCGTTTGTGCATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGaa < 1:191465/242‑1 (MQ=255) aaCCTGCAGCGATTACCGTGCGGTTAATCATTACCACGCGATCACAAAAATCCGGCACGGAACCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCAACCGGAAAGCTCGCCg > 1:490027/1‑251 (MQ=255) ccTGCAGCGATTACCGTGCGGTTAATCATTACCACGCGATCACAAAAATCCGGCACGGAACCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGAt < 1:529484/251‑1 (MQ=255) aGCGATTACCGTGCGGTTAATCATTACCACGCGATCACAAAAATCCGGCACGGAACCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTgg > 1:363114/1‑250 (MQ=255) tACCGTGCGGTTAATCATTACCACGCGATCACAAAAATCCGGCACGGAACCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATggg < 1:493631/251‑1 (MQ=255) ggTTAATCATTACCACGCGATCACAAAAATCCGGCACGGAACCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGgtgt > 1:280961/1‑251 (MQ=255) aaTCATTACCACGCGATCACAAAAATCCGGCACGGAACCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAgg < 1:390241/244‑1 (MQ=255) aaTCATTACCACGCGATCACAAAAATCCGGCACGGAACCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCaa > 1:761555/1‑251 (MQ=255) aaTCATTACCACGCGATCACAAAAATCCGGCACGGAACCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCaa > 1:21484/1‑251 (MQ=255) cATTACCACGCGATCACAAAAATCCGGCACGGAACCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGt < 1:151984/251‑1 (MQ=255) cATTACCACGCGATCACAAAAATCCGGCACGGAACCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGt < 1:12737/251‑1 (MQ=255) ccGGCACGGAACCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGc < 1:366051/251‑1 (MQ=255) gAACCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTtttg > 1:688761/1‑251 (MQ=255) aaCCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTtttgt > 1:577774/1‑251 (MQ=255) aCCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTtttgtt > 1:133021/1‑251 (MQ=255) aCCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTtttgtt < 1:721104/251‑1 (MQ=255) ccTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTtttgttt > 1:638577/1‑251 (MQ=255) aaaTTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAgg < 1:766266/204‑1 (MQ=255) tGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTc < 1:673240/251‑1 (MQ=255) aaCCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGAc < 1:105854/251‑1 (MQ=255) ccAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACt < 1:37181/244‑1 (MQ=255) gAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGc < 1:856101/161‑1 (MQ=255) gAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGc > 1:149789/1‑218 (MQ=255) gAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTtttgtt > 1:23655/1‑228 (MQ=255) aaTTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCa > 1:441235/1‑251 (MQ=255) tAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCg > 1:815474/1‑171 (MQ=255) aaaTGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGaa < 1:754093/251‑1 (MQ=255) aaaTGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGaa < 1:465020/251‑1 (MQ=255) cccTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCa > 1:494953/1‑251 (MQ=255) cTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCg < 1:631199/158‑1 (MQ=255) gCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATgg > 1:129715/1‑191 (MQ=255) gCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCAt > 1:79297/1‑251 (MQ=255) tAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAg > 1:789565/1‑250 (MQ=255) gACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGccc > 1:408646/1‑250 (MQ=255) ccTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGt < 1:48982/166‑1 (MQ=255) cTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATc < 1:169688/251‑1 (MQ=255) ataaATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTTCTTTGTTGTGTGAGCGCGCGAGCAAGAAATTCCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGc < 1:443719/251‑1 (MQ=255) taaATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGca > 1:821285/1‑251 (MQ=255) tCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGcaccac < 1:449971/251‑1 (MQ=255) ataatGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGc > 1:355711/1‑140 (MQ=255) ataatGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCAcc < 1:35632/159‑1 (MQ=255) cGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAAc < 1:776891/250‑1 (MQ=255) cGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAAc < 1:721780/250‑1 (MQ=255) cGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAAc < 1:717386/250‑1 (MQ=255) ttGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTtttgtt > 1:298271/1‑170 (MQ=255) ttGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGaa > 1:876927/1‑251 (MQ=255) ttGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGaa > 1:874068/1‑251 (MQ=255) aTCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAAc > 1:740368/1‑234 (MQ=255) aTCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGc > 1:561030/1‑250 (MQ=255) aTCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCG‑TTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCa > 1:628354/1‑251 (MQ=255) ggTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACag > 1:748295/1‑227 (MQ=255) ggTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACag < 1:651791/227‑1 (MQ=255) gTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAg < 1:821460/198‑1 (MQ=255) gTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGt < 1:387116/250‑1 (MQ=255) tGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTc < 1:205698/250‑1 (MQ=255) cAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGcaccac < 1:16859/201‑1 (MQ=255) cAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGca > 1:427544/1‑251 (MQ=255) taaaataaTCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGCACAt < 1:441889/251‑1 (MQ=255) aaaataaTCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAg > 1:642036/1‑165 (MQ=255) aaaataaTCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACag < 1:144608/208‑1 (MQ=255) aaaataaTCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGCACATa > 1:173587/1‑251 (MQ=255) aataatCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGCACATAAg < 1:466174/251‑1 (MQ=255) taatCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGcaccac > 1:10661/1‑193 (MQ=255) taatCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGCACATAAGac < 1:897195/251‑1 (MQ=255) taatCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGCACATAAGa > 1:658963/1‑250 (MQ=255) cTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATtg < 1:793594/234‑1 (MQ=255) ttACTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAg > 1:187731/1‑156 (MQ=255) aCTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCAt < 1:764897/167‑1 (MQ=255) aCTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGcac > 1:239567/1‑183 (MQ=255) aCTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAAc > 1:845882/1‑195 (MQ=255) aCTTTGTTGTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGCACATAAGACACTAAAt < 1:840742/251‑1 (MQ=255) ttgttgTGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGCACATAAGACACTAAAtttt > 1:737686/1‑251 (MQ=255) tgttgtGCGAGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGCACATAAGACACTAAATTTTg > 1:504815/1‑251 (MQ=255) aGCGCGCGAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGCACATAAGACACTAAATTTTGTTTTAAgg < 1:741315/250‑1 (MQ=255) cgcgcgAGCAAGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGCACATAAGACACTAAATTTTGTTTTAAGGc < 1:110194/249‑1 (MQ=255) aaGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGCACATAAGACACTAAATTTTGTTTTAAGGCTTGTTTAATtg < 1:777724/251‑1 (MQ=255) aaGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGCACATAAGACACTAAATTTTGTTTTAAGGCTTGTTTAATtg < 1:363336/251‑1 (MQ=255) aaGAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGCACATAAGACACTAAATTTTGTTTTAAGGCTTGTTTAATtg < 1:150275/251‑1 (MQ=255) gAAATACCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGCACATAAGACACTAAATTTTGTTTTAAGGCTTGttt < 1:57882/244‑1 (MQ=255) | AAAGTAGTTTCGGTCAAACCTGCAGCGATTACCGTGCGGTTAATCATTACCACGCGATCACAAAAATCCGGCACGGAACCTAAATTGTGCGTGGAAACCAGAATTAAATGCCCTTCACTGCGTAACTGACCTAATAAATCAATAATGGCGTTTTCCGTTTGTACATCTACGCCGGTGAAAGGTTCGTCCAATAAAATAATCTTACTTTGTTGTGCGAGCGCGCGAGCAAGAAATGCCCGTTTTTTTTGCCCACCGGAAAGCTCGCCGATTTGGCGATGGGCAAGGTGTTCAATGTTCACCCGTTGCATGGCTTCCTGCACCTTTTGTTTGTCCGTTTCACTCGGACGGCGCAGGAAGTTCATGTAACCATAGCGCCCCATCAGCACCACATCGTAAACAGAGACCGGAAATTGCCAGTCCACGTCTTCCGATTGTGGCACATAAGACACTAAATTTTGTTTTAAGGCTTGTTTAATTG > 1/562452‑562929 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |