| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 558,008 | T→C | V160V (GTA→GTG) | unknown ← | Putative efflux (PET) family inner membrane protein YccS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 558,008 | 0 | T | C | 100.0% | 235.5 / NA | 85 | V160V (GTA→GTG) | unknown | Putative efflux (PET) family inner membrane protein YccS |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (43/42); total (43/42) | |||||||||||
TGAATGTCCTGTGCGGCAAAATAATAACGAATCATTTGGGTGGTGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGTACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACGCTGCCCCAAAGCGCCGATCATGGTGAAGGCAAAGGTCATGAGCGTCATTAACAGCATAAATTGCAGGTTATGCCCAA > 1/557763‑558252 | tGAATGTCCTGTGCGGCAAAATAATAACGAATCATTTGGGTGGTGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCgg > 1:580699/1‑251 (MQ=255) gTCCTGTGCGGCAAAATAATAACGAATCATTTGGGTGGTGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGAt > 1:884667/1‑251 (MQ=255) gTCCTGTGCGGCAAAATAATAACGAATCATTTGGGTGGTGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATCTTCGATTTGATCGATTTCATCAAGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGAt > 1:430047/1‑251 (MQ=255) aaaTAATAACGAATCATTTGGGTGGTGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAaaataa > 1:258150/1‑251 (MQ=255) aataatAACGAATCATTTGGGTGGTGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAaaataaa > 1:706086/1‑251 (MQ=255) aataatAACGAATCATTTGGGTGGTGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAaaataaa > 1:280740/1‑251 (MQ=255) taataaCGAATCATTTGGGTGGTGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATg < 1:576416/251‑1 (MQ=255) cGAATCATTTGGGTGGTGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCg > 1:86307/1‑227 (MQ=255) cATTTGGGTGGTGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAggg > 1:94930/1‑251 (MQ=255) cATTTGGGTGGTGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAggg < 1:310871/251‑1 (MQ=255) aTTTGGGTGGTGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGt < 1:844355/251‑1 (MQ=255) aTTTGGGTGGTGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGt < 1:489925/251‑1 (MQ=255) aTTTGGGTGGTGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGt < 1:608309/251‑1 (MQ=255) ttGGGTGGTGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAg < 1:673380/251‑1 (MQ=255) ggtggtGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGa > 1:594680/1‑251 (MQ=255) tggtgTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACg > 1:161664/1‑251 (MQ=255) gtgtGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACg > 1:857398/1‑249 (MQ=255) gtgtGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACg > 1:54865/1‑249 (MQ=255) ggctgtggcGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAg > 1:498084/1‑240 (MQ=255) ggctgtggcGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATaa > 1:745649/1‑251 (MQ=255) tgtggcGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAagc < 1:753073/251‑1 (MQ=255) tggcGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAagcag < 1:528258/251‑1 (MQ=255) tggcGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAagcag < 1:368315/251‑1 (MQ=255) ttGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGc < 1:581852/251‑1 (MQ=255) cccGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCag < 1:803157/250‑1 (MQ=255) aagtatttagaaccgaaaaGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCagag > 1:70528/16‑251 (MQ=255) gTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAagc > 1:761231/1‑226 (MQ=255) tAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCgg < 1:651118/251‑1 (MQ=255) tAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCg < 1:597216/250‑1 (MQ=255) gtgcggGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGa > 1:583555/1‑202 (MQ=255) gtgcggGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGc > 1:184398/1‑223 (MQ=255) ggAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATATGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAgg < 1:732060/250‑1 (MQ=255) gAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAggg < 1:598044/250‑1 (MQ=255) gAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAggg < 1:555285/250‑1 (MQ=255) ccGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTAt > 1:303629/1‑250 (MQ=255) tGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGc < 1:375561/251‑1 (MQ=255) aGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTAc > 1:756899/1‑233 (MQ=255) gCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGc < 1:547717/205‑1 (MQ=255) cTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGa < 1:724568/169‑1 (MQ=255) gTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAagc > 1:827463/1‑178 (MQ=255) gTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCag > 1:821666/1‑190 (MQ=255) ttttCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAAc < 1:713834/251‑1 (MQ=255) ttttCATCGCCATGGCAATGTGTTTATTTTCGAGTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTTTCGGGCAAATAGGCCAGCGTGGTGTATAAc < 1:255868/251‑1 (MQ=255) ttCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGa > 1:900178/1‑163 (MQ=255) cGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGctacta > 1:19405/1‑251 (MQ=255) ccATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGc < 1:576257/177‑1 (MQ=255) ccATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATg > 1:203087/1‑200 (MQ=255) cATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGctactacta < 1:481489/251‑1 (MQ=255) gCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAgg < 1:465600/250‑1 (MQ=255) gCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAgg < 1:399664/250‑1 (MQ=255) gtgtTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGTTAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGa > 1:441369/1‑146 (MQ=255) gtgtTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGc > 1:897871/1‑167 (MQ=255) gtTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAgg < 1:713911/243‑1 (MQ=255) ttATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGc < 1:380927/251‑1 (MQ=255) aTCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTaa < 1:685233/250‑1 (MQ=255) aTCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTaa < 1:333471/250‑1 (MQ=255) cGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACGc < 1:586272/251‑1 (MQ=255) gATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGa > 1:370937/1‑125 (MQ=255) gATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACg > 1:719461/1‑249 (MQ=255) gATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACGCTGCCCCAAAg < 1:163219/249‑1 (MQ=255) aaaCATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGa > 1:112467/1‑107 (MQ=255) ggCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACGCTGCCCCAAAGCGCCGATCATGGTGAAg < 1:308993/247‑1 (MQ=255) tCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACGCTGCCCCAAAGCGCCGATCATGGTGAAGGCAAAGGt < 1:175227/251‑1 (MQ=255) gATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACGCTGCCCCAAAGCGCCGATCATGGTGAAGGCAAAGGTCATg > 1:868598/1‑251 (MQ=255) aaTTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACGCTGCCCCAAAGCGCCGATCATGGTGAAGGCAAAGGTCATGAGc < 1:17875/251‑1 (MQ=255) tGCCAAAAAGGATTTGGCAACGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACGCTGCCCCAAAGCGCCGATCATGGTGAAGGCAAAGGTCATGAGCGTCATTAACa > 1:373057/1‑251 (MQ=255) aCGCTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAggg > 1:195388/1‑109 (MQ=255) cTTTCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGctactacta < 1:437548/148‑1 (MQ=255) ttCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGt > 1:89348/1‑45 (MQ=255) ttCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACg < 1:805841/52‑1 (MQ=255) ttCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAagc < 1:362416/61‑1 (MQ=255) ttCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCag < 1:203322/73‑1 (MQ=255) ttCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTAc > 1:625115/1‑97 (MQ=255) ttCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCa < 1:831899/99‑1 (MQ=255) ttCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGcc < 1:692858/121‑1 (MQ=255) ttCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGctactacta > 1:307503/1‑146 (MQ=255) ttCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAgg < 1:717582/149‑1 (MQ=255) ttCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACGCTGCCCCAAAGCGCCGATCATGGTGAAGGCAAAGGTCATGAGCGTCATTAACAGCATAAATTGCAGGTTATGCCCaa > 1:296093/1‑251 (MQ=255) ttCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACGCTGCCCCAAAGCGCCGATCATGGTGAAGGCAAAGGTCATGAGCGTCATTAACAGCATAAATTGCAGGTTATGCCCaa > 1:755806/1‑251 (MQ=255) ttCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACGCTGCCCCAAAGCGCCGATCATGGTGAAGGCAAAGGTCATGAGCGTCATTAACAGCATAAATTGCAGGTTATGCCCaa > 1:298592/1‑251 (MQ=255) ttCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACGCTGCCCCAAAGCGCCGATCATGGTGAAGGCAAAGGTCATGAGCGTCATTAACAGCATAAATTGCAGGTTATGCCCaa > 1:115752/1‑251 (MQ=255) ttCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACGCTGCCCCAAAGCGCCGATCATGGTGAAGGCAAAGGTCATGAGCGTCATTAACAGCATAAATTGCAGGTTATGCCCaa > 1:892736/1‑251 (MQ=255) ttCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACGCTGCCCCAAAGCGCCGATCATGGTGAAGGCAAAGGTCATGAGCGTCATTAACAGCATAAATTGCAGGTTATGCCCaa > 1:567496/1‑251 (MQ=255) ttCCTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACGCTGCCCCAAAGCGCCGATCATGGTGAAGGCAAAGGTCATGAGCGTCATTAACAGCATAAATTGCAGGATATGCCCaa > 1:320360/1‑251 (MQ=255) ccTGCACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGa < 1:881224/48‑1 (MQ=255) | TGAATGTCCTGTGCGGCAAAATAATAACGAATCATTTGGGTGGTGTGGCTGTGGCGATGTTGCCCGCGAATACGGTAAAAAAGTGCGGTGCGGGAGCCGTTGAAGGCATTGATGAGTTCGCTGTTTTTCATCGCCATGGCAATGTGTTTATTTTCGATTTGATCGATTTCATCAGGATCGAAAAACATGGATTTGGCATCCAGATAATTGGCTAATGCCAAAAAGGATTTGGCAACGCTTTCCTGTACCGGGCGATTAGGGAAAAATAAATGCACGCATAGGGTAGTGACGCTATAAAGCAGCGTACCGCAGAGGATCATCAGCGGATTGATGTACCAAAGGGTATCGGGCAAATAGGCCAGCGTGGTGTATAACGCTACTACTAAGGTGCCGAAAGCGATGGTGCTGTAACGCTGCCCCAAAGCGCCGATCATGGTGAAGGCAAAGGTCATGAGCGTCATTAACAGCATAAATTGCAGGTTATGCCCAA > 1/557763‑558252 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |