| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 4 | 43,391 | C→A | intergenic (+250/‑105) | unknown → / → unknown | DNA polymerase III delta subunit (EC 2.7.7.7)/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 4 | 43,391 | 0 | C | A | 100.0% | 27.9 / NA | 12 | intergenic (+250/‑105) | unknown/unknown | DNA polymerase III delta subunit (EC 2.7.7.7)/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (5/7); total (5/7) | |||||||||||
TAGGGGTTTCATTGTGTTATTAGCTACTTTATTATCCGCATTTGCGATGTTTGCTTTTGTGGTTTCAGCCAACAGTCGTCGAATTAATTTGGCATCAATAAAGCTCAGATGGAATATCTTGAATTAGAATATAGACGATTATTAAATACAATATTACTTATATTGAGGAAAACAAGTGAAAAATTTCATACAATTTACTCTTTTTTGCCTGTTAATATATTTTATAGCAAGAATTCTATCAGATATATTTGACTTGCAAATATTTTATATCTATTTGGGAATACTGGTTTTATATTCATTTAAAGAAAGAATAAATAGTTTATTTAGTAAAATACGAGGAAAAAATGAGAGAGAGCGAAATTGATAATTTATCTTTAGTTTTTGGTAGTTCTCCAGTAAAAATAGTTGCGGCTGTTTCTAAACGGGAAATTCTCACTTTTTATTGTGGTTTGTCAGATTTGGCCTGATCTTCTACGGATAGT > 4/43152‑43633 | tAGGGGTTTCATTGTGTTATTAGCTACTTTATTATCCGCATTTGCGATGTTTGCTTTTGTGGTTTCAGCCAACAGTCGTCGAATTAATTTGGCATCAATAAAGCTCAGATGGAATATCTTGAATTAGAATATAGACGATTATTAAATACAATATTACTTATATTGAGGAAAACAAGTGAAAAATTTCATACAATTTACTCTTTTTTGCCTGTTAATATATTTTATAGCAAGAATTCTATAAGATATATTTg < 1:891153/251‑1 (MQ=255) ttCATTGTGTTATTAGCTACTTTATTATCCGCATTTGCGATGTTTGCTTTTGTGGTTTCAGCCAACAGTCGTCGAATTAATTTGGCATCAATAAAGCTCAGATGGAATATCTTGAATTAGAATATAGACGATTATTAAATACAATATTACTTATATTGAGGAAAACAAGTGAAAAATTTCATACAATTTACTCTTTTTTGCCTGTTAATATATTTTATAGCAAGAATTCTATAAGATATATTTGACTTGCa > 1:868913/1‑251 (MQ=255) gtgtTATTAGCTACTTTATTATCCGCATTTGCGATGTTTGCTTTTGTGGTTTCAGCCAACAGTCGTCGAATTAATTTGGCATCAATAAAGCTCAGATGGAATATCTTGAATTAGAATATAGACGATTATTAAATACAATATTACTTATATTGAGGAAAACAAGTGAAAAATTTCATACAATTTACTCTTTTTTGCCTGTTAATATATTTTATAGCAAGAATTCTATAAGATATATTTGACTTGCAAATAtt > 1:540564/1‑251 (MQ=255) tttGCGATGTTTGCTTTTGTGGTTTCAGCCAACAGTCGTCGAATTAATTTGGCATCAATAAAGCTCAGATGGAATATCTTGAATTAGAATATAGACGATTATTAAATACAATATTACTTATATTGAGGAAAACAAGTGAAAAATTTCATACAATTTACTCTTTTTTGCCTGTTAATATATTTTATAGCAAGAATTCTATAAGATATATTTGACTTGCAAATATTTTATATCTATTTGGGaa < 1:361626/241‑1 (MQ=255) aTAAAGCTCAGATGGAATATCTTGAATTAGAATATAGACGATTATTAAATACAATATTACTTATATTGAGGAAAACAAGTGAAAAATTTCATACAATTTACTCTTTTTTGCCTGTTAATATATTTTATAGCAAGAATTCTATAAGATATATTTGACTTGCAAATATTTTATATCTATTTGGGAATAc < 1:900704/187‑1 (MQ=255) atCTTGAATTAGAATATAGACGATTATTAAATACAATATTACTTATATTGAGGAAAACAAGTGAAAAATTTCATACAATTTACTCTTTTTTGCCTGTTAATATATTTTATAGCAAGAATTCTATAAGATATATTTGACTTGCAAATATTTTATATCTATTTGGGAATACTGGTTTtata > 1:867905/1‑179 (MQ=255) gAATATAGACGATTATTAAATATAATATTACTTATATTGAGGAAAACAAGTGAAAAATTTCATACAATTTACTCTTTTTTGCCTGTTAATATATTTTATAGCAAGAATTCTATAAGATATATTTGACTTGCAAATATTTTATATCTATTTGGGAATACTGGTTTTATATTCATTTAAAGAAAGAATAAATAg < 1:450970/192‑1 (MQ=255) gAATATAGACGATTATTAAATACAATATTACTTATATTGAGGAAAACAAGTGAAAAATTTCATACAATTTACTCTTTTTTGCCTGTTAATATATTTTATAGCAAGAATTCTATAAGATATATTTGACTTGCAAATATTTTATATCTATTTGGGAATACTGGTTTTATATTCATTTAAAGAAAGaataaata < 1:668521/191‑1 (MQ=255) atTTTATAGCAAGAATTCTATAAGATATATTTGACTTGCAAATATTTTATATCTATTTGGGAATACTGGTTTTATATTCATTTAAAGAAAGAATAAATAGTTTATTTAGTAAAATACGAGGAAAAAATGAGAGAGAGCGAAAt > 1:577694/1‑143 (MQ=255) taGCAAGAATTCTATAAGATATATTTGACTTGCAAATATTTTATATCTATTTGGGAATACTGGTTTTATATTCATTTAAAGAAAGAATAAATAGTTTATTTAGTAAAATACGAGGAAAAAATGAGAGAGAGCGAAATTGATAATTTATCTTTAGTTTTTGGTAGTTCTCCAGTAAAAATAGTTGCGGCTGTTTCTAAACGGGAAATTCTCACTTTTTATTGTGGTTTGTCAGATTTGGCCTGATCTTCTAc < 1:154019/251‑1 (MQ=255) aaTTCTATAAGATATATTTGACTTGCAAATATTTTATATCTATTTGGGAATACTGGTTTTATATTCATTTAAAGAAAGAATAAATAGTTTATTTAGTAAAATACGAGGAAAAAATGAGAGAGAGCGAAATTGATAATTTATCTTTAGTTTTTGGTAGTTCTCCAGTAAAAATAGTTGCGGCTGTTTCTAAACGGGAAATTCTCACTTTTTATTGTGGTTTGTCAGATTTGGCCTGATCTTCTACGGATAGt < 1:453281/251‑1 (MQ=255) cTATAAGATATATTTGACTTGCAAATATTTTATATCTATTTGGGAATACTGGTTTTATATTCATTTAAAGAAAGAATAAATAGTTTATTTAGTAAAATACGAGGAAAAAATGAGAGAGAGCGAAATTGATAATTTATCTTTAGTTTTTGGTAGTTCTCCAGTAAAAAt > 1:603052/1‑168 (MQ=255) | TAGGGGTTTCATTGTGTTATTAGCTACTTTATTATCCGCATTTGCGATGTTTGCTTTTGTGGTTTCAGCCAACAGTCGTCGAATTAATTTGGCATCAATAAAGCTCAGATGGAATATCTTGAATTAGAATATAGACGATTATTAAATACAATATTACTTATATTGAGGAAAACAAGTGAAAAATTTCATACAATTTACTCTTTTTTGCCTGTTAATATATTTTATAGCAAGAATTCTATCAGATATATTTGACTTGCAAATATTTTATATCTATTTGGGAATACTGGTTTTATATTCATTTAAAGAAAGAATAAATAGTTTATTTAGTAAAATACGAGGAAAAAATGAGAGAGAGCGAAATTGATAATTTATCTTTAGTTTTTGGTAGTTCTCCAGTAAAAATAGTTGCGGCTGTTTCTAAACGGGAAATTCTCACTTTTTATTGTGGTTTGTCAGATTTGGCCTGATCTTCTACGGATAGT > 4/43152‑43633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |