| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 4 | 4,200 | A→G | N156S (AAC→AGC) | unknown → | Transcriptional regulator, AraC family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 4 | 4,200 | 0 | A | G | 100.0% | 236.4 / NA | 85 | N156S (AAC→AGC) | unknown | Transcriptional regulator, AraC family |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (31/54); total (31/54) | |||||||||||
ATCACGGCGCGGGAACAGAAAGCCCGATTACCGAAACCACGCAGGGCGCATTCACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGCTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTGCTTTTTAACTTGCCCCATTGGTATCTTTCAAGCAATAACTCCGCCATCATGGCGTTGCTGGAGCTCCTTCGCAAAGAAACTGAGGAAAATTTAGGCAACAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGAAACGCCTAAAAAAAGTTGGAGCATGGAAGCCTTAGCGGAAAGTTGTGCTATGTCGCGTGCCAACTTCATCCGCGCATTCAAACAAAAAACCGGGATTCCGC > 4/3963‑4442 | aTCACGGCGCGGGAACAGAAAGCCCGATTACCGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTc < 1:851091/251‑1 (MQ=255)aTCACGGCGCGGGAACAGAAAGCCCGATTACCGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTc < 1:687358/251‑1 (MQ=255)aTCACGGCGCGGGAACAGAAAGCCCGATTACCGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTc < 1:572212/251‑1 (MQ=255) ggAACAGAAAGCCCGATTACCGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAgtgg > 1:762479/1‑235 (MQ=255) gAACAGAAAGCCCGATTACCGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAgtgg < 1:349016/234‑1 (MQ=255) aaCAGAAAGCCCGATTACCGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGc < 1:255037/250‑1 (MQ=255) aaCAGAAAGCCCGATTACCGAAACCACGCAGGGCGCATTTACATCGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGc < 1:535715/250‑1 (MQ=255) aaaGCCCGATTACCGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAatat < 1:532356/250‑1 (MQ=255) aaaGCCCGATTACCGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAat < 1:555830/248‑1 (MQ=255) aaGCCCGATTACCGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATtc < 1:793861/251‑1 (MQ=255) cccGATTACCGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTctct < 1:342239/251‑1 (MQ=255) cccGATTACCGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTctct < 1:809207/251‑1 (MQ=255) cGATTACCGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCttt < 1:714573/251‑1 (MQ=255) aTTACCGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTTCTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTttac < 1:62128/251‑1 (MQ=255) ttACCGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTACAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTttact < 1:83842/251‑1 (MQ=255) tACCGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAgtgg < 1:883674/218‑1 (MQ=255) cGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTAcc < 1:249278/251‑1 (MQ=255) cGAAACCACGCAGGGCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTAcc < 1:111449/251‑1 (MQ=255) ggCGCATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAgaga < 1:725896/248‑1 (MQ=255) cATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAGTCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCag > 1:774221/1‑241 (MQ=255) cATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAGACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGc > 1:446455/1‑215 (MQ=255) cATTTACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAatat > 1:480752/1‑220 (MQ=255) atttacaTTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGc < 1:660234/247‑1 (MQ=255) tttacaTTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCa > 1:475963/4‑251 (MQ=255) caTTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAAcat < 1:352758/251‑1 (MQ=255) gCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAAcatcat > 1:355465/1‑250 (MQ=255) tCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTg > 1:513621/1‑223 (MQ=255) gTAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCttt < 1:792325/212‑1 (MQ=255) tAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATTTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTc < 1:139880/250‑1 (MQ=255) tAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAAcat < 1:216516/241‑1 (MQ=255) tAACAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCa > 1:375194/1‑251 (MQ=255) cAGCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTttac > 1:655506/1‑210 (MQ=255) gCACAAGCGAATCCGATGATTTTGAAATGTTCTGTGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTctct < 1:439182/204‑1 (MQ=255) gCACAAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCaa > 1:537870/1‑251 (MQ=255) cacaAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCaa < 1:376901/250‑1 (MQ=255) caAGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGc < 1:545666/251‑1 (MQ=255) aGCGAATCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCAt > 1:558391/1‑251 (MQ=255) aaTCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATtctc < 1:883408/251‑1 (MQ=255) aaTCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATtctc < 1:317259/251‑1 (MQ=255) tCCGATGATTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCgg > 1:388980/1‑251 (MQ=255) gatTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTttacttac > 1:875968/1‑195 (MQ=255) atTTTGAAATGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAgaga > 1:585069/1‑205 (MQ=255) aaaTGTTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGAt < 1:135497/251‑1 (MQ=255) atgttctGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAg > 1:652598/5‑217 (MQ=255) gttctGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTAcc > 1:349541/3‑185 (MQ=255) ttctGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACg < 1:210692/250‑1 (MQ=255) ctGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTc > 1:252651/1‑151 (MQ=255) gCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTAcc < 1:870233/180‑1 (MQ=255) gTTATTTCCGTTATCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTAcc > 1:823605/1‑177 (MQ=255) aTCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATtc < 1:734933/153‑1 (MQ=255) aTCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCttt < 1:242079/158‑1 (MQ=255) aTCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAgaga < 1:520200/175‑1 (MQ=255) aTCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTaaaa < 1:78265/239‑1 (MQ=255) aTCTCAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAAt > 1:195294/1‑251 (MQ=255) tcAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCt < 1:184250/251‑1 (MQ=255) cAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTa < 1:176030/251‑1 (MQ=255) cAATCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTa > 1:871150/1‑251 (MQ=255) aaTCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTAt < 1:494064/251‑1 (MQ=255) tCTTGCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTAtgg < 1:615554/251‑1 (MQ=255) gCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATtc > 1:451497/1‑142 (MQ=255) gCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCt < 1:669463/243‑1 (MQ=255) gCCCAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGa > 1:148463/1‑251 (MQ=255) cAAAACCTACTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGAAAc < 1:262230/251‑1 (MQ=255) cTTTTTAACTTGCCCCATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATTCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAg > 1:673566/1‑172 (MQ=255) ccccATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGAt > 1:894880/1‑192 (MQ=255) ccATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATaa < 1:56057/192‑1 (MQ=255) ccATTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGAAACGCCTAAAAAAAGCTGGAGCATgg > 1:87883/1‑251 (MQ=255) aTTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGAAACGCCTAAAAAAAGCTGGAGCATGGaa > 1:310292/1‑251 (MQ=255) aTTGGTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGAAACGCCTAAAAAAAGCTGGAGCATGGaa > 1:470891/1‑251 (MQ=255) gTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGAAACGCCTAAAAAAAGCTGGAGCATGGAAGcc < 1:112585/250‑1 (MQ=255) gTATCTTTCCAGCAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGAAACGCCTAAAAAAAGCTGGAGCATGGAAGc > 1:845925/1‑249 (MQ=255) cAATAACATCGCCATCATGGCGCTACTGGAATTACTGCGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGAAACGCCTAAAAAAAGCTGGAGCATGGAAGCCTTAGCGGAAAGt < 1:10263/250‑1 (MQ=255) atggcgctactggaattactgcGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGAAACGCCTAAAAAAAGCTGGAGCATGGAAGCCTTAGCGGAAAGTTGTGCTATGTCGCGTGc < 1:559850/230‑1 (MQ=255) ctactggaattactgcGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACg > 1:756655/16‑155 (MQ=255) ctactggaattactgcGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGAAACGCCTAAAAAAAGCTGGAGCATGGAAGCCTTAGCGGAAAGTTGTGCTATGTCGCGTGCCAACtt < 1:584848/236‑1 (MQ=255) actggaattactgcGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGAt < 1:518593/135‑1 (MQ=255) actggaattactgcGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACg < 1:395086/140‑1 (MQ=255) actggaattactgcGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGAAACGCCTAAAAAAAGCTGGAGCATGGAAGCCTTAGCGGAAAGTTGTGCTATGTCGCGTGCCAACTTCa > 1:287841/14‑251 (MQ=255) ggaattactgcGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGc < 1:482542/114‑1 (MQ=255) ggaattactgcGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTa < 1:12355/163‑1 (MQ=255) aattactgcGCAAAGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGAAACGCCTAAAAAAAGCTGGAGCATGGAAGCCTTAGCGGAAAGTTGTGCTATGTCGCGTGCCAACTTCATCcg < 1:412281/242‑1 (MQ=255) aaaGAAACCGAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCa < 1:527942/107‑1 (MQ=255) accgAGGAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGAAACGCCTAAAAAAAGCTGGAGCATGGAAGCCTTAGCGGAAAGTTGTGCTATGTCGCGTGCCAACTTCATCCGCGCATTCAAACaaaaaat < 1:316412/248‑2 (MQ=255) ggAAAATTTAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGAAACGCCTAAAAAAAGCTGGAGCATGGAAGCCTTAGCGGAAAGTTGTGCTATGTCGCGTGCCAACTTCATCCGCGCATTCAAACAAAAAATCGGGa > 1:767959/1‑251 (MQ=255) tttAGGCAGCAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGAAACGCCTAAAAAAAGCTGGAGCATGGAAGCCTTAGCGGAAAGTTGTGCTATGTCGCGTGCCAACTTCATCCGCGCATTCAAACAAAAAATCGGGATTCCGc < 1:741478/251‑1 (MQ=255) | ATCACGGCGCGGGAACAGAAAGCCCGATTACCGAAACCACGCAGGGCGCATTCACATTGCATCGTAACAGCACAAGCGAATCCGATGATTTTGAAATGCTCTGCGGTTATTTCCGTTATCTCAATCTTGCCCAAAACCTGCTTTTTAACTTGCCCCATTGGTATCTTTCAAGCAATAACTCCGCCATCATGGCGTTGCTGGAGCTCCTTCGCAAAGAAACTGAGGAAAATTTAGGCAACAAAGTGGTGGTCAACGCGCTATGCAATATTCTCTTTACTTACCTGATCAGAGATTATCTGCAACATCATCAAGTCAACCAAGGCATTCTCGGCGCTTTGCAGGATAAACGTTTAAAAAATGCGGTAAATGCTATGGTGGAAACGCCTAAAAAAAGTTGGAGCATGGAAGCCTTAGCGGAAAGTTGTGCTATGTCGCGTGCCAACTTCATCCGCGCATTCAAACAAAAAACCGGGATTCCGC > 4/3963‑4442 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |