| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 4 | 3,742 | T→C | Y3Y (TAT→TAC) | unknown → | Transcriptional regulator, AraC family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 4 | 3,742 | 0 | T | C | 100.0% | 260.3 / NA | 90 | Y3Y (TAT→TAC) | unknown | Transcriptional regulator, AraC family |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (39/51); total (39/51) | |||||||||||
CCTGGGTGCCTAATTTGGGTGGTGATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATTATCATGATGGCAGGAGGATTGGTTGCTGCCGCCGAATGCGCTAATCGATGGCTAAAGGCGAAACAATCCGTCTAATTGT‑AAATCTGGCTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTATTTAGATCAGCTTATCCGATTATCGGGCATTGAGGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTAATCTTCCTGCCTTATGGTGAGGAACATAGCCTTTATCACGGCGCGGGAACAGAAAG > 4/3498‑3984 | ccTGGGTGCCTAATTTGGGCGGTGATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGa < 1:524066/251‑1 (MQ=255)ccTGGGTGCCTAATTTGGGCGGTGATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGa < 1:133242/251‑1 (MQ=255) tGGGTGCCTAATTTGGGCGGTGATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCTCCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATc < 1:217368/251‑1 (MQ=255) tGGGTGCCTAATTTGGGCGGTGATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATc < 1:599349/251‑1 (MQ=255) tGGGTGCCTAATTTGGGCGGTGATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATc < 1:641882/251‑1 (MQ=255) gggTGCCTAATTTGGGCGGTGATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATc < 1:673567/250‑1 (MQ=255) tGCCTAATTTGGGCGGTGATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATc < 1:713448/247‑1 (MQ=255) gCCTAATTTGGGCGGTGATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCtt > 1:677133/1‑251 (MQ=255) ccTAATTTGGGCGGTGATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCtt < 1:50923/250‑1 (MQ=255) tAATTTGGGCGGTGATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATc > 1:138843/1‑243 (MQ=255) aTTTGGGCGGTGATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCg < 1:705444/251‑1 (MQ=255) ttGGGCGGTGATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGAt < 1:397163/251‑1 (MQ=255) gtgATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATc > 1:418050/1‑232 (MQ=255) gtgATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCggg > 1:802376/1‑251 (MQ=255) gATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATc > 1:277334/1‑230 (MQ=255) gATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGc > 1:472947/1‑233 (MQ=255) aCGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGgag > 1:116363/1‑251 (MQ=255) ccGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCg < 1:694718/228‑1 (MQ=255) ttATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATc > 1:66483/1‑221 (MQ=255) gTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCGCCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATcc < 1:587501/250‑1 (MQ=255) gTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATcc < 1:233774/250‑1 (MQ=255) gTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATcc < 1:798582/250‑1 (MQ=255) cccTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAatat > 1:147407/1‑244 (MQ=255) cccTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGT‑GTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGc > 1:592711/1‑250 (MQ=255) cTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCg > 1:869025/1‑251 (MQ=255) ttatttatCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGgag < 1:263398/231‑1 (MQ=255) tatttatCTGCGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCg < 1:278882/249‑1 (MQ=255) cGGCAGGGCGGCTGGTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGgaga > 1:83952/1‑251 (MQ=255) ggTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATc > 1:739227/1‑177 (MQ=255) gTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATc > 1:290665/1‑176 (MQ=255) gTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGTGAGACTGGCTGATtcat > 1:142292/1‑250 (MQ=255) gTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATtcat > 1:142275/1‑250 (MQ=255) gTTATTAAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATtc > 1:703385/1‑248 (MQ=255) taAAGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAg < 1:571639/251‑1 (MQ=255) aaaGATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGc < 1:311868/251‑1 (MQ=255) gATATCATCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGaagg > 1:326592/1‑192 (MQ=255) catCATGATGGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCg < 1:809440/171‑1 (MQ=255) tgGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAAt < 1:261160/251‑1 (MQ=255) tgGCAGGAGGATTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAAt > 1:332415/1‑251 (MQ=255) gaggaTTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGa < 1:238937/159‑1 (MQ=255) gaggaTTGGTTGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATcac < 1:89719/225‑1 (MQ=255) ttGCCGCCGCCGAATGTGCAAATCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACAt < 1:278345/251‑1 (MQ=255) aatgtgcaaaTCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACgcgg < 1:84031/243‑1 (MQ=255) gtgcaaaTCGGTGGTTAAAGGCGAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGa > 1:206998/6‑251 (MQ=255) gAAACAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAAt > 1:349272/1‑251 (MQ=255) aaaCAATCCGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGc > 1:476701/1‑148 (MQ=255) ccGTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATcc > 1:205243/1‑136 (MQ=255) gTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATc < 1:373124/92‑1 (MQ=255) gTCTAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAAcc > 1:712132/1‑247 (MQ=255) tAATTGTAAAATCTAACTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATcac < 1:271648/166‑1 (MQ=255) taaaatctaacTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTaaac < 1:215618/240‑2 (MQ=255) taaaatctaacTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAAc < 1:470952/241‑1 (MQ=255) taaaatctaacTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAAc < 1:504708/241‑1 (MQ=255) taaaatctaacTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGACCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAAc < 1:425359/241‑1 (MQ=255) taaaatctaacTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGACCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAAc < 1:439239/241‑1 (MQ=255) atctaacTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCggg > 1:393359/7‑251 (MQ=255) atctaacTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCggg > 1:507602/7‑251 (MQ=255) aGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGtgat > 1:239449/1‑247 (MQ=255) gCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCt < 1:362377/135‑1 (MQ=255) gCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATtc < 1:440927/140‑1 (MQ=255) gCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGAGCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAAc < 1:455064/236‑1 (MQ=255) cTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATc > 1:696923/1‑67 (MQ=255) cTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCt < 1:854887/250‑1 (MQ=255) ttATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATc < 1:503770/66‑1 (MQ=255) ccTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGc > 1:290267/1‑249 (MQ=255) ccTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCATCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGc > 1:900583/1‑249 (MQ=255) gtgATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACAt < 1:472516/168‑1 (MQ=255) gtgATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTgtgt < 1:123473/173‑1 (MQ=255) gtgATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTgtgt < 1:777617/173‑1 (MQ=255) gtgATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGCCTTATg > 1:647113/1‑251 (MQ=255) gtgATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGCCTTATg > 1:633217/1‑251 (MQ=255) gtgATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGCCTTATg > 1:668260/1‑251 (MQ=255) tgATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGCCTTATgg < 1:583457/251‑1 (MQ=255) tgATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGCCTTATgg < 1:163788/251‑1 (MQ=255) aTAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCGCATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGCCTTATGGTg < 1:871963/251‑1 (MQ=255) ggCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGCCTTATGGTGAgg > 1:321627/1‑251 (MQ=255) cGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATc < 1:109619/42‑1 (MQ=255) cGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTc > 1:607662/1‑150 (MQ=255) cGTTTAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGAtt < 1:834770/179‑1 (MQ=255) tttAATCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGCCTTATGGTGAGGAACATAGCCt < 1:365210/251‑1 (MQ=255) tCAGGGCAAACATTGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGCCTTATGGTGAGGAACATAGCCTTTATc < 1:852464/251‑1 (MQ=255) ttGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGCCTTATGGTGAGGAACATAGCCTTTATc > 1:486878/1‑239 (MQ=255) tGAAATATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGCCTTATGGTGAGGAACATAGCCTTTATCACGGCGCGGGAAc < 1:289107/251‑1 (MQ=255) aaTATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGCCTTATGGTGAgg < 1:283800/220‑1 (MQ=255) aaTATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGCCTTATGGTGAGGAACATAGcc < 1:317554/229‑1 (MQ=255) aaTATGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGCCTTATGGTGAGGAACATAGc > 1:612467/1‑228 (MQ=255) atGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAAttt > 1:253868/1‑110 (MQ=255) atGGACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGCCTTATGGTGAGGAACATAGCCTTTATCACGGCGCGGGAACAGAAAg < 1:463055/251‑1 (MQ=255) ggACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAAc < 1:44439/168‑1 (MQ=255) gACTACTTAGATCAGCTTATCCGATTATCGGGCATTGAAGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTGATCTTCCTGCCTTATgg > 1:874884/1‑209 (MQ=255) | CCTGGGTGCCTAATTTGGGTGGTGATTTACCAACGCCGAATTATGGTTTCCCTTATTTATCTGCGGCAGGGCGGCTGGTTATTAAAGATATTATCATGATGGCAGGAGGATTGGTTGCTGCCGCCGAATGCGCTAATCGATGGCTAAAGGCGAAACAATCCGTCTAATTGT‑AAATCTGGCTGAAGCTTATCACCTTGTGATAGGCTTCTTCGTTTAATCAGGGCAAACATTGAAATATGGACTATTTAGATCAGCTTATCCGATTATCGGGCATTGAGGGAGAAATCAATATCCTCTGCCGTTTCCGGGGAGACTGGCTGATTCATCACAAGCAGGAACCCAATTTAATCGGCAAATTTCACATTGTGTCACGCGGCGAATGTCAGATTCGGCTGAAAAATCAAACCTGCCATCTAAAACCGGGCGATGTAATCTTCCTGCCTTATGGTGAGGAACATAGCCTTTATCACGGCGCGGGAACAGAAAG > 4/3498‑3984 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |