| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 366,717 | T→C | H196H (CAT→CAC) | unknown → | PTS system, mannitol‑specific IIC component / PTS system, mannitol‑specific IIB component (EC 2.7.1.197) / PTS system, mannitol‑specific IIA component (EC 2.7.1.197) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 366,717 | 0 | T | C | 100.0% | 161.3 / NA | 59 | H196H (CAT→CAC) | unknown | PTS system, mannitol‑specific IIC component / PTS system, mannitol‑specific IIB component (EC 2.7.1.197) / PTS system, mannitol‑specific IIA component (EC 2.7.1.197) |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (28/31); total (28/31) | |||||||||||
ATAAATGGGCGCACGGTAAAATCAAAAGCGGTTTTGAGATGTTGGTCAACAACTTCTCCTCCGGCATTATCGGGATGATTCTGGCGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCATGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAACCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATCCACGAAATCTATTTCCCTTATGTGTTAATGAATCCGCGCTTGTTACTCGCGGTTATTG > 1/366476‑366955 | aTAAATGGGCGCACGGTAAAATCAAAAGCGGTTTTGAGATGTTGGTCAACAACTTCTCCTCCGGCATTATCGGGATGATTCTGGCGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCAtttt < 1:577492/250‑1 (MQ=255) aaaTGGGCGCACGGTAAAATCAAAAGCGGTTTTGAGATGTTGGTCAACAACTTCTCCTCCGGCATTATCGGGATGATTCTGGCGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTtctc < 1:437087/251‑1 (MQ=255) aTGGGCGCACGGTAAAATCAAAAGCGGTTTTGAGATGTTGGTCAACAACTTCTCCTCCGGCATTATCGGGATGATTCTGGCGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCa > 1:587946/1‑250 (MQ=255) cGGTAAAATCAAAAGCGGTTTTGAGATGTTGGTCAACAACTTCTCCTCCGGCATTATCGGGATGATTCTGGCGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTa > 1:330535/1‑251 (MQ=255) gTAAAATCAAAAGCGGTTTTGAGATGTTGGTCAACAACTTCTCCTCCGGCATTATCGGGATGATTCTGGCGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTAtt > 1:363762/1‑251 (MQ=255) gTAAAATCAAAAGCGGTTTTGAGATGTTGGTCAACAACTTCTCCTCCGGCATTATCGGGATGATTCTGGCGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTAt < 1:681073/250‑1 (MQ=255) aaTCAAAAGCGGTTTTGAGATGTTGGTCAACAACTTCTCCTCCGGCATTATCGGGATGATTCTGGCGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTcaac < 1:459522/251‑1 (MQ=255) aaTCAAAAGCGGTTTTGAGATGTTGGTCAACAACTTCTCCTCCGGCATTATCGGGATGATTCTGGCGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTcaac < 1:551094/251‑1 (MQ=255) aaTCAAAAGCGGTTTTGAGATGTTGGTCAACAACTTCTCCTCCGGCATTATCGGGATGATTCTGGCGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTcaac < 1:28396/251‑1 (MQ=255) ttttGAGATGTTGGTCAACAACTTCTCCTCCGGCATTATCGGGATGATTCTGGCGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAAt < 1:342439/251‑1 (MQ=255) ttttGAGATGTTGGTCAACAACTTCTCCTCCGGCATTATCGGGATGATTCTGGCGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAAt < 1:514553/251‑1 (MQ=255) ggCATTATCGGGATGATTCTGGCGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTc > 1:527812/1‑226 (MQ=255) atTCTGGCGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAAtccgggtccggg > 1:802811/1‑251 (MQ=255) atTCTGGCGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAAtccgggtccggg > 1:776624/1‑251 (MQ=255) cGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTggg < 1:19017/250‑1 (MQ=255) aTTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCgt > 1:806262/1‑251 (MQ=255) gTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGc < 1:407243/244‑1 (MQ=255) tttGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGc < 1:534986/237‑1 (MQ=255) gtcggtcCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATAttt < 1:48833/250‑1 (MQ=255) gtcCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGc > 1:572296/1‑150 (MQ=255) gtcCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCAtttt > 1:790692/1‑190 (MQ=255) gtcCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGcc < 1:303560/239‑1 (MQ=255) gtcCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTttctt > 1:712242/1‑250 (MQ=255) gtcCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTttctt > 1:78999/1‑250 (MQ=255) gtcCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTttctt > 1:17690/1‑250 (MQ=255) gtcCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTttctt > 1:208988/1‑250 (MQ=255) aTCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGt > 1:658211/1‑248 (MQ=255) gtgtTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTtc > 1:230117/1‑117 (MQ=255) gtTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGcc > 1:816206/1‑211 (MQ=255) ttGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAgg < 1:529337/251‑1 (MQ=255) ggCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTc > 1:383723/1‑142 (MQ=255) gCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTttctt < 1:867689/211‑1 (MQ=255) cGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGcggcgg < 1:609155/251‑1 (MQ=255) aGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGt < 1:371409/109‑1 (MQ=255) ttAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCActt < 1:576412/251‑1 (MQ=255) gATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTcgg > 1:465019/1‑251 (MQ=255) acTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGcc < 1:35817/176‑1 (MQ=255) cTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATcc < 1:530340/251‑1 (MQ=255) cTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATcc < 1:261376/251‑1 (MQ=255) cTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATcc < 1:833872/251‑1 (MQ=255) cTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATcc < 1:326575/251‑1 (MQ=255) gttgCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGcc > 1:221526/1‑172 (MQ=255) aaCCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATCCACGAAATCTATTTCCCTTATGTGTTAATg < 1:13834/251‑1 (MQ=255) ccGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATCCACGAAATCTATTTCCCTTATGTGTTAATGaa < 1:676702/251‑1 (MQ=255) gCGAAGATTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATCCACGAAATCTATTTCCCTTATGTGTTAATGAATc < 1:688666/250‑1 (MQ=255) aTTCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGCGATTCAATTTTTCGGGGGTATCTACGAAATCTTTTTCCCCTATGCGTTAATGTATTCGCGCtt > 1:485834/1‑251 (MQ=255) ttCTGTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGCTTCACTTCTTCGGCGGTATTCACGCAAACTATTTTCCTTATGTGTTAATGAATCCGCGCTTg > 1:246972/1‑251 (MQ=255) gTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTaaacaa > 1:55961/1‑163 (MQ=255) gTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATCCACGAAATCTATTTcc > 1:87984/1‑221 (MQ=255) gTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATCCACGAAATCTATTTcc < 1:363392/221‑1 (MQ=255) gTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATCCACGAAATCTATTTCCCTTATGTGTTAATGAATCCGCGCTTGTTa > 1:885821/1‑250 (MQ=255) gTTCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATCCACGAAATCTATTTCCCTTATGTGTTAATGAATCCGCGCTTGTTa > 1:461452/1‑250 (MQ=255) ttCTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATCCACGAAATCTATTTCCCTTATGTGTTAATg > 1:304161/1‑234 (MQ=255) cTTAAACAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATCCACGAAATCTATTTcc < 1:477371/218‑1 (MQ=255) aaaCAACGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATCCACGaa > 1:142685/1‑205 (MQ=255) acGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATCCACGAAATCTATTTCCCTTATGTGTTAATGAATCCGCGCTTGTTACTCGCGGTTAtt > 1:148423/1‑251 (MQ=255) cGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATCCACGAAATCTATTTCCCTTATGTGTTAATGAATCCGCGCTTGTTACTCGCGGTTATTg < 1:767517/251‑1 (MQ=255) cGCCATTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATCCACGAAATCTATTTCCCTTATGTGTTAATGAATCCGCGCTTGTTACTCGCGGTTATTg < 1:18388/251‑1 (MQ=255) aTTAACCACGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAATCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATCCACGAAATCTATTTccc < 1:358801/206‑1 (MQ=255) | ATAAATGGGCGCACGGTAAAATCAAAAGCGGTTTTGAGATGTTGGTCAACAACTTCTCCTCCGGCATTATCGGGATGATTCTGGCGATTCTGTTCTTCTTTGTGGTCGGTCCGGTGGTGAAATCCTTAACCGAAGTGTTGGCGGCAGGCGTAAAAGTGTTAGTTGATAACAACTTGTTGCCATTAACCTCCATTTTCGTTGAACCGGCGAAGATTCTGTTCTTAAACAACGCCATTAACCATGGCATTTTCTCACCGCTTGGTATTCAACAATCACAAGAATTTGGTCAGTCCATTTTCTTCTTAATCGAAGCCAACCCGGGTCCGGGCTTGGGCGTGTTGTTAGCCTATATTTTCTTCGGTAAAGGGTCTGCTAAACAAACCGCAGGCGGTGCGGCGGTGATTCACTTCTTCGGCGGTATCCACGAAATCTATTTCCCTTATGTGTTAATGAATCCGCGCTTGTTACTCGCGGTTATTG > 1/366476‑366955 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |