Predicted mutation
evidence seq id position mutation annotation gene description
RA 2 21,814 C→T C73Y (TGT→TAT)  unknown ← COG0859: ADP‑heptose:LPS heptosyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*221,8140CT100.0% 205.6 / NA 74C73Y (TGT→TAT) unknownCOG0859: ADP‑heptose:LPS heptosyltransferase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (43/31);  total (43/31)

GAAATATGTGTTGTGTCATTTTGTGGACAAGCGAAATTATAATTTTTGATTGTATCTAAATTATAATTTTCCTTATGTTTTTTATTAAACACAATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGAAATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAACAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATCATTATTAAATCTATGTTTTCTGCTTTTCGTTTTCCGGCTAATTTAGCAACGAGTTTTTTTGTTATTGACATAAAATTAATTTATTTTAACC  >  2/21574‑22051
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                             
gAAATATGTGTTGTGTCATTTTGTGGACAAGCGAAATTATAATTTTTGATTGTATCTAAATTATAATTTTCCTTATGTTTTTTATTAAACACAATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAAt                                                                                                                                                                                                                                     >  1:706535/1‑251 (MQ=255)
                                                                    ttCCTTATGTTTTTTATTAAACACAATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTa                                                                                                                                                                 >  1:315929/1‑251 (MQ=255)
                                                                     tCCTTATGTTTTTTATTAAACACAATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGt                                                                                                                                                                                      >  1:348225/1‑229 (MQ=255)
                                                                                 ttattaAACACAATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGa                                                                                                                                                                                                                 <  1:478780/190‑1 (MQ=255)
                                                                                     taAACACAATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCa                                                                                                                                                <  1:272487/251‑1 (MQ=255)
                                                                                        acacAATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACg                                                                                                                                             >  1:523605/1‑251 (MQ=255)
                                                                                         cacaATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGc                                                                                                                                                 >  1:321041/1‑246 (MQ=255)
                                                                                           caATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCaaaaa                                                                                                                                                                                                                                      >  1:748129/1‑159 (MQ=255)
                                                                                           caATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCTGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCa                                                                                                                                          >  1:316172/1‑251 (MQ=255)
                                                                                           caATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCa                                                                                                                                                >  1:98150/1‑245 (MQ=255)
                                                                                           caATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCa                                                                                                                                                <  1:223396/245‑1 (MQ=255)
                                                                                           caATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGc                                                                                                                                           <  1:832704/250‑1 (MQ=255)
                                                                                           caATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCa                                                                                                                                          >  1:674030/1‑251 (MQ=255)
                                                                                           caATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCa                                                                                                                                          >  1:794023/1‑251 (MQ=255)
                                                                                           caATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCa                                                                                                                                          >  1:809085/1‑251 (MQ=255)
                                                                                           caATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCa                                                                                                                                          >  1:139509/1‑251 (MQ=255)
                                                                                           caATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCa                                                                                                                                          >  1:285367/1‑251 (MQ=255)
                                                                                             ataatGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTc                                                                                                                                                                                                                      <  1:782631/173‑1 (MQ=255)
                                                                                             ataatGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGa                                                                                                                                                                                                                 >  1:114245/1‑178 (MQ=255)
                                                                                             ataatGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAg                                                                                                                                                                                              >  1:152386/1‑197 (MQ=255)
                                                                                             ataatGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCAt                                                                                                                                         >  1:431505/1‑250 (MQ=255)
                                                                                                         ggTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATc                                                                                                                                                                                                            >  1:170398/1‑171 (MQ=255)
                                                                                                         ggTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCa                                                                                                                                                <  1:615070/231‑1 (MQ=255)
                                                                                                         ggTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCAt                                                                                                                             >  1:365335/1‑250 (MQ=255)
                                                                                                              tAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCtg                                                                                                                                                                                                                    >  1:634590/1‑158 (MQ=255)
                                                                                                                      tctcTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGc                                                                                                                                           >  1:602193/1‑223 (MQ=255)
                                                                                                                       ctctAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGa                                                                                                                                                                                                                 <  1:326073/152‑1 (MQ=255)
                                                                                                                       ctctAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGt                                                                                                                                                                                      <  1:139544/179‑1 (MQ=255)
                                                                                                                         ctAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTaac                                                                                                            <  1:698019/251‑1 (MQ=255)
                                                                                                                         ctAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTaac                                                                                                            <  1:521494/251‑1 (MQ=255)
                                                                                                                              ataataGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTaac                                                                                                            >  1:65215/1‑246 (MQ=255)
                                                                                                                              ataataGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAacaaca                                                                                                        >  1:386660/1‑250 (MQ=255)
                                                                                                                              ataataGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAacaaca                                                                                                        >  1:628373/1‑250 (MQ=255)
                                                                                                                              ataataGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAacaaca                                                                                                        >  1:817334/1‑250 (MQ=255)
                                                                                                                              ataataGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGAGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAacaaca                                                                                                        >  1:447972/1‑250 (MQ=255)
                                                                                                                              ataataGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAACAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGc                                                                                                                                                 <  1:446849/209‑1 (MQ=255)
                                                                                                                               taataGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATgg                                                                                                                    >  1:225061/1‑237 (MQ=255)
                                                                                                                                    gACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAAt                                                                                                                                                                                                    <  1:512776/152‑1 (MQ=255)
                                                                                                                                    gACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCa                                                                                                                                                <  1:370333/204‑1 (MQ=255)
                                                                                                                                    gACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGAttt                                                                                                 >  1:188097/1‑251 (MQ=255)
                                                                                                                                     aCTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAAt                                                                                                                                                                        >  1:590107/1‑179 (MQ=255)
                                                                                                                                     aCTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTa                                                                                                >  1:259842/1‑251 (MQ=255)
                                                                                                                                        tAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATc                                                                                             <  1:606248/251‑1 (MQ=255)
                                                                                                                                             gtgtAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATc                                                                                             <  1:644418/246‑1 (MQ=255)
                                                                                                                                              tgtAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATCattatt                                                                                       <  1:247579/251‑1 (MQ=255)
                                                                                                                                                               tCCAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATCATTATTAAATCTATGTTTTCTg                                                                       >  1:342685/1‑250 (MQ=255)
                                                                                                                                                                 cAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCa                                                                                                                                                >  1:100481/1‑175 (MQ=255)
                                                                                                                                                                 cAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGAttt                                                                                                 >  1:373682/1‑222 (MQ=255)
                                                                                                                                                                 cAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATc                                                                                             <  1:514074/226‑1 (MQ=255)
                                                                                                                                                                 cAAATAGAGATCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATc                                                                                             >  1:816108/1‑226 (MQ=255)
                                                                                                                                                                         gaTCCCATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGa                                                                                                                                                                                                                 >  1:75732/1‑102 (MQ=255)
                                                                                                                                                                             ccATTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATCATTATTAAATc                                                                                  >  1:681153/1‑225 (MQ=255)
                                                                                                                                                                               aTTTGCGACATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGAtt                                                                                                  <  1:720417/207‑1 (MQ=255)
                                                                                                                                                                                           gagaAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATCATTATTAAATCTATGTTTTCTGCTTTTCGTTTTCCGGCTAATTTCGCAACg                                          >  1:345545/1‑251 (MQ=255)
                                                                                                                                                                                             gaAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCa                                                                                                                                                <  1:150143/147‑1 (MQ=255)
                                                                                                                                                                                                atatAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATggg                                                                                                                   <  1:877019/173‑1 (MQ=255)
                                                                                                                                                                                                     ggTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGc                                                                                                                                                 >  1:175188/1‑138 (MQ=255)
                                                                                                                                                                                                     ggTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCa                                                                                                                                                >  1:84866/1‑139 (MQ=255)
                                                                                                                                                                                                     ggTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCa                                                                                                                                                <  1:871436/139‑1 (MQ=255)
                                                                                                                                                                                                     ggTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATc                                                                                             >  1:713326/1‑190 (MQ=255)
                                                                                                                                                                                                     ggTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATCATTATTAAATCTATGTTTTCTGc                                                                      <  1:652968/213‑1 (MQ=255)
                                                                                                                                                                                                     ggTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTCAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATCATTATTAAAt                                                                                   >  1:157597/1‑200 (MQ=255)
                                                                                                                                                                                                      gTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATCATTATTAAATCTATGTTTTCTGCTTTTCGTTTTCCGGCTAATTTAGCAACGAGTTTTTTTg                                <  1:825317/250‑1 (MQ=255)
                                                                                                                                                                                                              tttGTCCTCCAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATCATTATTAAATCTATGTTTTCTGCTTTTCGTTTTCCGGCTAATTTAGCAACGAGTTTTTTTGTTATTGAc                        <  1:554516/250‑1 (MQ=255)
                                                                                                                                                                                                                  tcctccAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCa                                                                                                                                                >  1:261988/1‑126 (MQ=255)
                                                                                                                                                                                                                  tcctccAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATCATTATTAAATCTATGTTTTCTGCTTTTCGTTTTCCGGCTAATTTAGCAACGAGTTTTTTTg                                <  1:271179/238‑1 (MQ=255)
                                                                                                                                                                                                                    ctccAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAacac                                                                                                       <  1:291801/165‑1 (MQ=255)
                                                                                                                                                                                                                     tccAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATCATTATTAAATCTATGTTTTCTGCTTTTCGTTTTCCGGCTAATTTAGCAACGAGTTTTTTTGTTATTGACATAAaatt                <  1:729298/251‑1 (MQ=255)
                                                                                                                                                                                                                      ccAGGAGAACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATCa                                                                                            >  1:82746/1‑174 (MQ=255)
                                                                                                                                                                                                                          gagaACATCAACTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATCATTATTAAATCTATGTTTTCTGCTTTTCGTTTTCCGGCTAATTTAGCAACGAGTTTTTTTGTTATTGACATAAaattaatt            <  1:518644/250‑1 (MQ=255)
                                                                                                                                                                                                                                   aaCTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTaac                                                                                                            <  1:471755/145‑1 (MQ=255)
                                                                                                                                                                                                                                   aaCTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATCATTATTAAATCTATGTTTTCTGCTTTTCGTTTTCCGGCTAATTTAGCAACGAGTTTTTTTGTTATTGACATAAAATTAATTTATTTTAAcc  <  1:843266/251‑1 (MQ=255)
                                                                                                                                                                                                                                   aaCTAAATCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATCATTATTAAATCTATGTTTTCTGCTTTTCGTTTTCCGGCTAATTTAGCAACGAGTTTTTTTGTTATTGACATAAAATTAATTTATTTTAAcc  <  1:610636/251‑1 (MQ=255)
                                                                                                                                                                                                                                       aaaTCGGAATAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGAtt                                                                                                  >  1:406169/1‑151 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                             
GAAATATGTGTTGTGTCATTTTGTGGACAAGCGAAATTATAATTTTTGATTGTATCTAAATTATAATTTTCCTTATGTTTTTTATTAAACACAATAATGTACTTCGGTGATAACAGCTTCTCTAAAATAATAGACTTAGTGGTGTAAGTTGGCTGAAAATCCAAATAGAGATCCCATTTGCGAAATTGAGAAATATAGGTTAAAGGTTTGTCCTCCAGGAGAACATCAACTAAATCGGAACAAGCAAAAATGTCCCGATTCCTTTCTGTGACGATCACGCCAATCACCAGTTCCGGGTTGGCAAGTTTTAATTGTTTTAAATGCGCGGTATGGGCAACGGCATCGCCAATAGCATCGCCAATGGGTTTTAACAACACCGATTTAATCATTATTAAATCTATGTTTTCTGCTTTTCGTTTTCCGGCTAATTTAGCAACGAGTTTTTTTGTTATTGACATAAAATTAATTTATTTTAACC  >  2/21574‑22051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑