| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 2 | 15,375 | A→G | T213T (ACT→ACC) | unknown ← | Cyclic AMP receptor protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 2 | 15,375 | 0 | A | G | 100.0% | 217.1 / NA | 79 | T213T (ACT→ACC) | unknown | Cyclic AMP receptor protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (42/37); total (42/37) | |||||||||||
GATCCAAGGCTTTGCTGTCGCCATCAAAATGGGTGCCACCAAAGCCGATTTCGACAACACCGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGCGGTTTCTTTTAAAGATGTTTTTAGCGAGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGTTTGCGCAATGCGACCGGTGACATCTAAAAAGGCTAAATTACTTACTTGGCGCG > 2/15128‑15616 | gATCCAAGGCTTTGCTGTCGCCATCAAAATGGGTGCCACCAAAGCCGATTTCGACAACACCGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTg > 1:314245/1‑251 (MQ=255)gATCCAAGGCTTTGCTGTCGCCATCAAAATGGGTGCCACCAAAGCCGATTTCGACAACACCGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTg > 1:578984/1‑251 (MQ=255) aTCCAAGGCTTTGCTGTCGCCATCAAAATGGGTGCCACCAAAGCCGATTTCGACAACACCGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTg > 1:744884/1‑250 (MQ=255) aTCCAAGGCTTTGCTGTCGCCATCAAAATGGGTGCCACCAAAGCCGATTTCGACAACACCGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTg > 1:133357/1‑250 (MQ=255) gCTTTGCTGTCGCCATCAAAATGGGTGCCACCAAAGCCGATTTCGACAACACCGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTaa < 1:143004/249‑1 (MQ=255) cTTTGCTGTCGCCATCAAAATGGGTGCCACCAAAGCCGATTTCGACAACACCGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAAc < 1:416691/250‑1 (MQ=255) ttGCTGTCGCCATCAAAATGGGTGCCACCAAAGCCGATTTCGACAACACCGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTAc < 1:414208/251‑1 (MQ=255) cTGTCGCCATCAAAATGGGTGCCACCAAAGCCGATTTCGACAACACCGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGAt < 1:142595/251‑1 (MQ=255) cAAAATGGGTGCCACCAAAGCCGATTTCGACAACACCGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCg < 1:699834/251‑1 (MQ=255) cAAAATGGGTGCCACCAAAGCCGATTTCGACAACACCGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCg < 1:635139/251‑1 (MQ=255) aaaTGGGTGCCACCAAAGCCGATTTCGACAACACCGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCgtg > 1:266639/1‑251 (MQ=255) caAAGCCGATTTCGACAACACCGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAgg < 1:27141/251‑1 (MQ=255) aTTTCGACAACACCGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGAt < 1:518925/250‑1 (MQ=255) ttCGACAACACCGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCg > 1:259393/1‑226 (MQ=255) ccGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCAtttt > 1:583877/1‑251 (MQ=255) tGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAg < 1:789455/251‑1 (MQ=255) aCCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGcc > 1:812499/1‑250 (MQ=255) gTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCg < 1:5934/195‑1 (MQ=255) agTTTGTAACGATGCGTTAACCGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTCTAGCCATTAGGCAGAAAAACGCCTAAGACAAAAACCGCACTTGAGTCGATCAACATAACGTGTGGTTTCTTTTAAAGCTGTTTTTAGCGGGTGCCGTAAACTACGa > 1:776669/1‑175 (MQ=255) agTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAAc > 1:853914/1‑170 (MQ=255) aaCGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGAcc < 1:544656/251‑1 (MQ=255) aaCGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGAcc < 1:760038/251‑1 (MQ=255) gCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATc > 1:14653/1‑196 (MQ=255) gCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGt > 1:808554/1‑251 (MQ=255) cGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTc < 1:450447/251‑1 (MQ=255) aCGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGAttt > 1:288552/1‑251 (MQ=255) ggCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAgg < 1:239248/176‑1 (MQ=255) tGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCggg < 1:284814/251‑1 (MQ=255) gATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCgggg > 1:22602/1‑250 (MQ=255) aaaCAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGAtt > 1:458564/1‑251 (MQ=255) cAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTa > 1:788455/1‑251 (MQ=255) aaGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAAtt < 1:386147/251‑1 (MQ=255) ggTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGGGATTTTAATTTg > 1:683682/1‑251 (MQ=255) gTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAAtttt > 1:485646/1‑249 (MQ=255) gTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTg > 1:519771/1‑250 (MQ=255) tCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGc < 1:120285/250‑1 (MQ=255) cTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCAt < 1:585642/251‑1 (MQ=255) aaaGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATAc < 1:393216/250‑1 (MQ=255) aaaGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATAc < 1:151709/250‑1 (MQ=255) aaGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCg < 1:274324/251‑1 (MQ=255) aCCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTg < 1:572947/249‑1 (MQ=255) ccTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGaac < 1:797973/190‑1 (MQ=255) tttGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCAt > 1:455779/1‑251 (MQ=255) tttAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCt < 1:452243/251‑1 (MQ=255) gCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTgg > 1:354943/1‑205 (MQ=255) gAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCg > 1:266670/1‑104 (MQ=255) cGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTg > 1:541025/1‑251 (MQ=255) aaGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCaa > 1:486120/1‑251 (MQ=255) gAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTg > 1:718057/1‑213 (MQ=255) gAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTg < 1:522126/213‑1 (MQ=255) aaaaaaaCCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGt < 1:312224/251‑1 (MQ=255) aaaaaaCCGCACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGtt < 1:265973/251‑1 (MQ=255) cACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTc > 1:416561/1‑166 (MQ=255) cACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTg < 1:315272/202‑1 (MQ=255) cACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCg < 1:257254/210‑1 (MQ=255) cACTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGGGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGTTTGCGCAATg > 1:40301/1‑251 (MQ=255) aCTTGAGTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGTTTGCGCAATGc < 1:873613/251‑1 (MQ=255) gTCGATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTc > 1:244515/1‑199 (MQ=255) gATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCAt < 1:397989/144‑1 (MQ=255) gATCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGt > 1:586354/1‑231 (MQ=255) aTCAACATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGTTTGCGCAATGCGACCGGTGa < 1:573197/250‑1 (MQ=255) aCATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGcc > 1:289243/1‑111 (MQ=255) aCATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGAc > 1:394650/1‑115 (MQ=255) aCATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGGGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGTTTGCGCAATGCGACCGGttatattt > 1:288939/1‑244 (MQ=255) cATAAAGTTTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGtt < 1:610877/226‑1 (MQ=255) cATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCggggga > 1:770042/1‑158 (MQ=255) cATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGTTTGCGCAATGCGACCGGTGACATCt < 1:283471/250‑1 (MQ=255) cATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGTTTGCGCAATGCGACCGGTGACATCTa > 1:98030/1‑251 (MQ=255) cATAAAGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGTTTGCGCAATGCGACCGGTGACATCTa > 1:174244/1‑251 (MQ=255) aaGTGTGGTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGTTTGCGCAATGCGACCGGTGACATCTaaaaa > 1:810363/1‑251 (MQ=255) gtgtggTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCa > 1:120728/5‑185 (MQ=255) tgtggTTTCTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGTTTGCGCAATGCGACCGGTGACATCTAAAAAGGc < 1:528537/248‑1 (MQ=255) cTTTTAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCggg > 1:301373/1‑169 (MQ=255) tAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGTTTGCGCAATGCGACCGGTGACATCTAAAAAGGCTAAAttacttac < 1:837555/251‑1 (MQ=255) tAAAGATGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGTTTGCGCAATGCGACCGGTGACATCTAAAAAGGCTAAAttacttac < 1:290007/251‑1 (MQ=255) tGTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGAt > 1:857218/1‑61 (MQ=255) gTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGTTTgcgc > 1:716393/1‑205 (MQ=255) gTTTTTAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGTTTGCGCAATGCGACCGGTGACATCTAAAAAGGCTAAATTACTTACTTGgcg > 1:51914/1‑250 (MQ=255) tttttAGCGGGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGTTTGCGCAATGCGACCGGGGACATCTTAAAAGGCTAAATTACTTACTTGGcgcg > 1:720685/1‑251 (MQ=255) | GATCCAAGGCTTTGCTGTCGCCATCAAAATGGGTGCCACCAAAGCCGATTTCGACAACACCGTGGCAATCCACCCGACAGGTTCGGAAGAGTTTGTAACGATGCGTTAAACGATGGCTTGATTAAACAAAAGGTCTGAAAGTGTTCAGACCTTTTGTTTAGCCATTAGGCAGAAAAACGCCTAAGAAAAAAACCGCACTTGAGTCGATCAACATAAAGTGCGGTTTCTTTTAAAGATGTTTTTAGCGAGTGCCGTAAACTACGATGGTTTTGCCGTGTGCCGAGATGAGGTGTTGATCTTCCAGCATTTTCAGAATACGCCCGACGGTTTCCCGCGAACAACCGACCATTTGTCCGATTTCCTGGCGGGTGATTTTAATTTGCATACCGTCCGGGTGAGTCATCGCTTCCGGCATTTTTGCCAGATTGAGCAAGGTTTGCGCAATGCGACCGGTGACATCTAAAAAGGCTAAATTACTTACTTGGCGCG > 2/15128‑15616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |