| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,656,940 | A→G | intergenic (‑256/+150) | unknown ← / ← unknown | LSU ribosomal protein L14p (L23e)/Transposase, IS200 family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,656,940 | 0 | A | G | 98.5% | 184.6 / ‑5.1 | 68 | intergenic (‑256/+150) | unknown/unknown | LSU ribosomal protein L14p (L23e)/Transposase, IS200 family |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (26/41); total (26/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.66e-01 | |||||||||||
CCGTTAAATTAAAAAACCACCCTTGCGGGACGAACCTACCCATAATGGATAGAGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACTCTATAAGGACCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCTTATATACTCCTACACTACCTTTGTATTTAGCCCTACCGTGCTTACATAATAGCC > 1/1656694‑1657134 | ccGTTAAATTAAAAAACCACCCTTGCGGGACGAACCTACCCATAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTa > 1:121738/1‑251 (MQ=255) ttaaattaaaAAACCACCCTTGCGGGACGAACCTACCCATAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGt < 1:626927/250‑1 (MQ=255) taaattaaaAAACCACCCTTGCGGGACGAACCTACCCATAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTAc < 1:61688/251‑1 (MQ=255) taaattaaaAAACCACCCTTGCGGGACGAACCTACCCATAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTAc < 1:391296/251‑1 (MQ=255) taaattaaaAAACCACCCTTGCGGGACGAACCTACCCATAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTAc < 1:213221/251‑1 (MQ=255) taaaAAACCACCCTTGCGGGACGAACCTACCCATAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTcac < 1:841238/251‑1 (MQ=255) taaaAAACCACCCTTGCGGGACGAACCTACCCATAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTcac < 1:647553/251‑1 (MQ=255) aaaaCCACCCTTGCGGGACGAACCTACCCATAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATg < 1:564492/251‑1 (MQ=255) cccTTGCGGGACGAACCTACCCATAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTcac < 1:323021/241‑1 (MQ=255) aaCCTACCCATAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGaa > 1:822286/1‑251 (MQ=255) aaCCTACCCATAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGaa > 1:637833/1‑251 (MQ=255) aaCCTACCCATAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGaa > 1:656965/1‑251 (MQ=255) aCCCATAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACca > 1:110779/1‑251 (MQ=255) cATAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAggg < 1:619991/235‑1 (MQ=255) aTAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTcac < 1:179212/219‑1 (MQ=255) aTAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGccc < 1:603433/225‑1 (MQ=255) aTAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACcaacaa > 1:596947/1‑251 (MQ=255) tAATGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAgg > 1:304165/1‑232 (MQ=255) tGGATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATg > 1:377388/1‑236 (MQ=255) ggATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCTCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAATACCAACAACCGTg > 1:592589/1‑251 (MQ=255) ggATAGGGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAGAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTg > 1:442594/1‑251 (MQ=255) gggTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTAc > 1:718687/3‑204 (MQ=255) gggTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATa > 1:60690/3‑251 (MQ=255) gggTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATa > 1:604799/3‑251 (MQ=255) cGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAActc < 1:784670/250‑1 (MQ=255) cGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAActc < 1:378821/250‑1 (MQ=255) ttCTAGCACAAAAAACAT‑ACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGa > 1:161021/1‑250 (MQ=255) tCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGAc < 1:770265/251‑1 (MQ=255) cATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAgg < 1:368567/251‑1 (MQ=255) gCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGcc < 1:139948/180‑1 (MQ=255) gCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACata > 1:182577/1‑251 (MQ=255) cAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGCTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTAc > 1:865443/1‑169 (MQ=255) cAATAAGCTGTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACata < 1:738604/250‑1 (MQ=255) cTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAg < 1:883993/232‑1 (MQ=255) cTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCt > 1:791961/1‑216 (MQ=255) cTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCcaca > 1:611023/1‑230 (MQ=255) cTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTa > 1:765615/1‑251 (MQ=255) cTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTa > 1:189806/1‑251 (MQ=255) cTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGAGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTa > 1:448156/1‑251 (MQ=255) cTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGAc > 1:667338/1‑200 (MQ=255) cTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAAt < 1:156630/251‑1 (MQ=255) cTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAAt < 1:38189/251‑1 (MQ=255) ttCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAACACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCa > 1:433788/1‑251 (MQ=255) gaatgaatTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAgg > 1:461475/1‑202 (MQ=255) gaatTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACata < 1:642302/208‑1 (MQ=255) aatTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGcc < 1:475590/136‑1 (MQ=255) agaCGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTc < 1:404344/250‑1 (MQ=255) agaCGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTc > 1:793161/1‑250 (MQ=255) gaCGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTc < 1:707668/249‑1 (MQ=255) aCGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTcc < 1:7322/249‑1 (MQ=255) acaacaAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCTTATATAc < 1:297376/251‑1 (MQ=255) acaacaAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCTTATATAc < 1:807378/251‑1 (MQ=255) acaacaAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCTTATATAc < 1:79598/251‑1 (MQ=255) acaacaAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCTTATATAc < 1:114133/251‑1 (MQ=255) aaGTGCGGTCTAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCTTATATACTCCTacac < 1:432470/251‑1 (MQ=255) aaGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCTTATATACTCCTacac < 1:54500/251‑1 (MQ=255) tGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCTTATATACTCCTACACTa < 1:121018/250‑1 (MQ=255) gTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACatat < 1:567567/179‑1 (MQ=255) aaTTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCTTATATACTCCTACACTACCTTTGTa < 1:807770/250‑1 (MQ=255) aTGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCTTATATACTCCTACACTAc > 1:704376/1‑234 (MQ=255) gTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCCTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCTTATATACTCCTACACTACCTTTGTAt < 1:705038/240‑1 (MQ=255) ttttttAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGAc < 1:163679/138‑1 (MQ=255) ttttAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACGTATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCTTATATAc < 1:649152/218‑1 (MQ=255) gCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTcc < 1:728366/198‑1 (MQ=255) cAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCTTATATACTCCTACACTACCTTTGTATTTAGCCCTACCGTGCTTACATAATAGcc < 1:719766/251‑1 (MQ=17) cAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCTTATATACTCCTACACTACCTTTGTATTTAGCCCTACCGTGCTTACATAATAGcc < 1:262100/251‑1 (MQ=17) atcataaaaTAACAATCCGCACGTAAAACGTGCAGTTTTTAGGCTACTCTATAAAGACCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCTTATATACTCCTACACTACCTTTGTATTTAGCCCTACCGTGCTTACATAATAGcc < 1:203148/246‑1 (MQ=2) gAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACCCTATAAGGGCCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCaacaac < 1:114875/100‑1 (MQ=255) | CCGTTAAATTAAAAAACCACCCTTGCGGGACGAACCTACCCATAATGGATAGAGTGCGGATTCTAGCACAAAAAACATAACGAAAGCAATAAGCTTTTAAATAACTTATACGCTTTCATGAAAAGAATGAATTTGAGACGTAAACAACAAAAAGTGCGGTCGAATTTCCAGATGTTTTTTAGCTGTGAATCAAGAAAAATAACAATCCGCACGTAAAACGTGCGGTTTTTAGGCTACTCTATAAGGACCTAGTACTTCACATGCCCTTCAAAGGGCATATGAAAACCAACAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATTCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCTTATATACTCCTACACTACCTTTGTATTTAGCCCTACCGTGCTTACATAATAGCC > 1/1656694‑1657134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |