| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,582,668 | C→T | S26S (AGC→AGT) | unknown → | Alanyl‑tRNA synthetase (EC 6.1.1.7) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,582,668 | 0 | C | T | 98.5% | 174.4 / ‑6.4 | 65 | S26S (AGC→AGT) | unknown | Alanyl‑tRNA synthetase (EC 6.1.1.7) |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (33/31); minor base A (1/0); total (34/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCACTTTTATGATTTCTGAATGTGAGTGCGGTTTTTTCGTCTTGTCGGAAAAATAAAGCATTATAGCTAAAAAGGTTTTTTATAAATGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGCTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGAAAATGTGGGTTACACAGCCAGACATCATACATTCTTTGAAATGCTCGGAAACTTCAGTTTTGGGGATTATTTTAAACAGGACGCGATC > 1/1582425‑1582911 | cGCACTTTTATGATTTCTGAATGTGAGTGCGGTTTTTTCGTCTTGTCGGAAAAATAAAGCATTATAGCTAAAAAGGTTTTTTATAAATGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTgg < 1:194140/251‑1 (MQ=255) ttCTGAATGTGAGTGCGGTTTTTTCGTCTTGTCGGAAAAATAAAGCATTATAGCTAAAAAGGTTTTTTATAAATGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGa > 1:90441/1‑250 (MQ=255) ggAATGTGAGTGCGGTTTTTTCGTCTTGTCGGAAAAATAAAGCATTATAGCTAAAAAGGTTTTTTATAAATGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCg > 1:118562/2‑251 (MQ=255) gAATGTGAGTGCGGTTTTTTCGTCTTGTCGGAAAAATAAAGCATTATAGCTAAAAAGGTTTTTTATAAATGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGa > 1:797779/1‑251 (MQ=255) aGTGCGGTTTTTTCGTCTTGTCGGAAAAATAAAGCATTATAGCTAAAAAGGTTTTTTATAAATGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTAc < 1:379937/250‑1 (MQ=255) gTTTTTTCGTCTTGTCGGAAAAATAAAGCATTATAGCTAAAAAGGTTTTTTATAAATGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTa > 1:513711/1‑250 (MQ=255) ttttttCGTCTTGTCGGAAAAATAAAGCATTATAGCTAAAAAGGTTTTTTATAAATGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGtttgcc < 1:114560/251‑4 (MQ=255) tCTTGTCGGAAAAATAAAGCATTATAGCTAAAAAGGTTTTTTATAAATGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCggg < 1:39294/251‑1 (MQ=255) ttGTCGGAAAAATAAAGCATTATAGCTAAAAAGGTTTTTTATAAATGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGaa < 1:663993/251‑1 (MQ=255) aaaTAAAGCATTATAGCTAAAAAGGTTTTTTATAAATGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTAc > 1:230640/1‑224 (MQ=255) cATTATAGCTAAAAAGGTTTTTTATAAATGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTg > 1:594710/1‑218 (MQ=255) gCTAAAAAGGTTTTTTATAAATGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGtttttt > 1:190904/1‑251 (MQ=255) ggTTTTTTATAAATGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTg > 1:593800/1‑251 (MQ=255) tttATAAATGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCaa < 1:97606/206‑1 (MQ=255) tGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATGGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGAAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCtt > 1:454463/1‑251 (MQ=255) tGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTgg < 1:710361/164‑1 (MQ=255) gAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTtat < 1:462807/250‑1 (MQ=255) gtgtgtAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTAcc < 1:484457/188‑1 (MQ=255) gtgtgtAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTAcc > 1:592590/1‑188 (MQ=255) gtgtgtAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGcc < 1:299336/249‑1 (MQ=255) gtgtAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAAtt < 1:204250/206‑1 (MQ=255) gtgtAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTaaaaa > 1:464799/1‑212 (MQ=255) gtgtAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGc < 1:79309/246‑1 (MQ=255) gtgtAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTg > 1:875775/1‑250 (MQ=255) gtgtAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCCTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGCAGCAAGTAGATCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTg > 1:122628/1‑250 (MQ=255) gtAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTAcc > 1:482057/1‑184 (MQ=255) aCAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGT‑AATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTGCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTAc < 1:583232/251‑1 (MQ=255) aCAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGAAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGAAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCAc > 1:154208/1‑249 (MQ=255) cAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTAc < 1:225041/251‑1 (MQ=255) cgGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTAc > 1:300000/1‑244 (MQ=255) cTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCAGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGc < 1:699415/251‑1 (MQ=255) cAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCtgtgt > 1:172136/1‑251 (MQ=255) ccTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTg > 1:162580/1‑153 (MQ=255) ccTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGc < 1:26099/219‑1 (MQ=255) ccTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTgtgcgtg > 1:181982/1‑250 (MQ=255) cTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGaaaa > 1:828312/1‑251 (MQ=255) atTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGa > 1:697586/1‑251 (MQ=255) aaaGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGaa < 1:501105/250‑1 (MQ=255) aaaGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGaa < 1:88946/250‑1 (MQ=255) gCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTgtgcgtg > 1:131436/1‑216 (MQ=255) gAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAAcc < 1:383595/131‑1 (MQ=255) gAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTaaaaa < 1:536357/141‑1 (MQ=255) aGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTAc < 1:13140/184‑1 (MQ=255) caacaGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCGAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGAAAATGTGGGTTACACAGCCAGAcat < 1:661801/251‑1 (MQ=255) caacaGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGAAAATGTGGGTTACACAGCCAGAcat < 1:2098/251‑1 (MQ=255) caAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGAAAATGTGGGTTACACAGCCAGACATCATACAtt > 1:93237/1‑251 (MQ=255) gtatccacagaaggcttcggcaatttttCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGAAAATGTGGGTTACACAGCCAGACATCATACAtt > 1:259814/24‑250 (MQ=255) gACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTAc < 1:79149/166‑1 (MQ=255) aCAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGAAAATGTGGGTTACACAGCCAGACATCATACATTCTTTGaaa < 1:178611/251‑1 (MQ=255) aTCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTgtgcgtg > 1:105993/1‑182 (MQ=255) tatCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGAcc > 1:843322/1‑70 (MQ=255) tatCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGAAAATGTGGGTTac < 1:158560/216‑1 (MQ=255) tatCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGAAAATGTGGGTTACACAGCCAGACATCATACATTCTTTGAAATGCTCgg > 1:475821/1‑251 (MQ=255) gATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGAAAATGTGGGTTACACAGCCAGACATCATACATTCTTTGaaa > 1:163387/1‑238 (MQ=255) tAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTgtgcgtgc < 1:363203/162‑1 (MQ=255) tAGCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGaa < 1:669908/187‑1 (MQ=255) gCAAGGGGCATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGAAAATGTGGGTTACACAGCCAGACATCATACATTCTTTg > 1:591533/1‑222 (MQ=255) cATCAAGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTAc > 1:461642/1‑131 (MQ=255) aaGTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGaa < 1:63278/173‑1 (MQ=255) gTTGTAGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGAAAATGTGGGTTACACAGCCAGACATCATACATTCTTTGaaa > 1:537899/1‑211 (MQ=255) gTAGCAAGTAGTGCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGAAAATGTGGGTTacac < 1:443881/182‑1 (MQ=255) aGCAAGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGaa < 1:582909/166‑1 (MQ=255) aaGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTgtgcg > 1:63197/1‑135 (MQ=255) aaGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGaaaa > 1:140466/1‑165 (MQ=255) aaGTAGTTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGAAAATGTGGGTTACACAGCCAGACATCATACATTCTTTGAAATGCTCGGAAACTTCAGTTTTGGGGATTATTTTAAACAGGACGCGATc > 1:42856/1‑250 (MQ=255) | CGCACTTTTATGATTTCTGAATGTGAGTGCGGTTTTTTCGTCTTGTCGGAAAAATAAAGCATTATAGCTAAAAAGGTTTTTTATAAATGGGAAAAGTGTGTAACAATACGCGGCTACCCAATTACCTTTTAATTCTAAAGATATTTTAAGAAAGCAAGGCTTGTAAATGAAGACAACAGCACAAATCCGACAATCATATCTTGATTTTTTCCATAGCAAGGGGCATCAAGTTGTAGCAAGTAGCTCTTTGGTTCCGGAAAATGACCCGACATTACTGTTTACCAATGCGGGAATGAACCAATTTAAAAATGTTTTTTTAGGTTTGGAAAAACGCCCTTATAGCCGTGCCACTACCGCTCAACGCTGTGTGCGTGCCGGAGGAAAACATAATGATTTAGAAAATGTGGGTTACACAGCCAGACATCATACATTCTTTGAAATGCTCGGAAACTTCAGTTTTGGGGATTATTTTAAACAGGACGCGATC > 1/1582425‑1582911 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |