Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,574,772 G→A R164R (CGC→CGT)  unknown ← Copper sensory histidine kinase CpxA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,574,7720GA100.0% 242.4 / NA 86R164R (CGC→CGT) unknownCopper sensory histidine kinase CpxA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (34/52);  total (34/52)

TTTGACAATACCTCTTCAAGAGAAAGCATCATGCGGTTAAAACTTTGTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGGCGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTTTCTTCTTCAGTGAGTGCGCCGAGAATTTGTCCACTCGGCGAGATTAGTACAGGAT  >  1/1574545‑1575016
                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                    
tttGACAATACCTCTTCAAGAGAAAGCATCATGCGGTTAAAACTTTGTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGAt                                                                                                                                                                                                                               <  1:165627/251‑1 (MQ=255)
       aTACCTCTTCAAGAGAAAGCATCATGCGGTTAAAACTTTGTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTc                                                                                                                                                                                                                        <  1:829545/251‑1 (MQ=255)
       aTACCTCTTCAAGAGAAAGCATCATGCGGTTAAAACTTTGTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTc                                                                                                                                                                                                                        <  1:829569/251‑1 (MQ=255)
         aCCTCTTCAAGAGAAAGCATCATGCGGTTAAAACTTTGTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCtg                                                                                                                                                                                                                      <  1:662058/251‑1 (MQ=255)
             ctTCAAGAGAAAGCATCATGCGGTTAAAACTTTGTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGt                                                                                                                                                                                                                                         <  1:342649/228‑1 (MQ=255)
             ctTCAAGAGAAAGCATCATGCGGTTAAAACTTTGTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGAtc                                                                                                                                                                                                                              >  1:794846/1‑239 (MQ=255)
              ttCAAGAGAAAGCATCATGCGGTTAAAACTTTGTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCAt                                                                                                                                                                                                                 <  1:631847/251‑1 (MQ=255)
                cAAGAGAAAGCATCATGCGGTTAAAACTTTGTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGt                                                                                                                                                                                                                                         <  1:339814/225‑1 (MQ=255)
                    agaAAGCATCATGCGGTTAAAACTTTGTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTATGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGAt                                                                                                                                                                                                                               >  1:433894/1‑231 (MQ=255)
                          catcatGCGGTTAAAACTTTGTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGTCCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGAtt                                                                                                                                                                                                       <  1:398285/249‑1 (MQ=255)
                             catGCGGTTAAAACTTTGTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACaa                                                                                                                                                                                                  <  1:215471/251‑1 (MQ=255)
                                 cGGTTAAAACTTTGTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAata                                                                                                                                                                                              >  1:868333/1‑251 (MQ=255)
                                      aaaaCTTTGTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGc                                                                                                                                                                                         <  1:415294/251‑1 (MQ=255)
                                       aaaCTTTGTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCt                                                                                                                                                                                        <  1:830886/251‑1 (MQ=255)
                                              gTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAatat                                                                                                                                                                                             >  1:813319/1‑239 (MQ=255)
                                               tCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAgat                                                                                                                                                                                 <  1:151343/250‑1 (MQ=255)
                                                   aCTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATc                                                                                                                                                                                                            <  1:492771/219‑1 (MQ=255)
                                                   aCTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAatat                                                                                                                                                                                             <  1:550895/234‑1 (MQ=255)
                                                    cTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTa                                                                                                                                                                           <  1:447506/251‑1 (MQ=255)
                                                       gACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTc                                                                                                                                                                                                                        <  1:646689/203‑1 (MQ=255)
                                                         cGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTa                                                                                                                                                                           >  1:701088/1‑246 (MQ=255)
                                                         cGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTc                                                                                                                                                                      <  1:662666/251‑1 (MQ=255)
                                                            aaCTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATc                                                                                                                                                                                                            <  1:783213/210‑1 (MQ=255)
                                                              cTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGAt                                                                                                                                                                 <  1:729406/251‑1 (MQ=255)
                                                              cTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGAt                                                                                                                                                                 <  1:71549/251‑1 (MQ=255)
                                                                      aCCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATc                                                                                                                                                                                                            >  1:809431/1‑200 (MQ=255)
                                                                                            attaATTTTTAAATTTCCTATGGCGACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAAttt                                                                                                                                   <  1:309100/251‑1 (MQ=255)
                                                                                                           tCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACa                                                                                                                                       >  1:785571/1‑232 (MQ=255)
                                                                                                            ccTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGAc                                                                                                                                            <  1:438125/226‑1 (MQ=255)
                                                                                                                        gCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCtg                                                                                                                                                                                                                      >  1:755341/1‑140 (MQ=255)
                                                                                                                                  cAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAAt                                                                                             <  1:363728/251‑1 (MQ=255)
                                                                                                                                     gTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCtg                                                                                                                                                                                                                      >  1:133419/1‑127 (MQ=255)
                                                                                                                                     gTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAgat                                                                                                                                                                                 >  1:202097/1‑164 (MQ=255)
                                                                                                                                     gTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGAtt                                                                                                                  >  1:764857/1‑227 (MQ=255)
                                                                                                                                      ttGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTgg                                                                                                                          <  1:675100/218‑1 (MQ=255)
                                                                                                                                                cGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGAtt                                                                                                                                                                                                       >  1:782098/1‑131 (MQ=255)
                                                                                                                                                cGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGCAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATc                                                                                                                                                                                                            >  1:712377/1‑126 (MQ=255)
                                                                                                                                                 gAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTaaaa                                                                              >  1:164340/1‑251 (MQ=255)
                                                                                                                                                   aTAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAaaat                                                                            <  1:369750/251‑1 (MQ=255)
                                                                                                                                                          gACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGTTCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAgat                                                                                                                                                                                 >  1:724883/1‑143 (MQ=255)
                                                                                                                                                          gACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATc                                                                                                                                                                                                            <  1:668226/116‑1 (MQ=255)
                                                                                                                                                          gACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAg                                                                                                                                                                                   <  1:725810/141‑1 (MQ=255)
                                                                                                                                                          gACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGa                                                                                                                                                                  <  1:633102/158‑1 (MQ=255)
                                                                                                                                                          gACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACaga                                                                                                                                                      <  1:590339/170‑1 (MQ=255)
                                                                                                                                                          gACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGa                                                                                           >  1:368433/1‑229 (MQ=255)
                                                                                                                                                          gACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGa                                                                                           <  1:882458/229‑1 (MQ=255)
                                                                                                                                                          gACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGa                                                                                           <  1:6099/229‑1 (MQ=255)
                                                                                                                                                          gACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGa                                                                                           >  1:326673/1‑229 (MQ=255)
                                                                                                                                                          gACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAaaat                                                                            >  1:135360/1‑244 (MQ=255)
                                                                                                                                                          gACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAAtt                                                                       <  1:531445/249‑1 (MQ=255)
                                                                                                                                                          gACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGa                                                                     >  1:621311/1‑251 (MQ=255)
                                                                                                                                                          gACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGa                                                                     >  1:472568/1‑251 (MQ=255)
                                                                                                                                                            ccTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTc                                                                                                                                                                                                                        <  1:856728/102‑1 (MQ=255)
                                                                                                                                                            ccTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAatat                                                                                                                                                                                             <  1:101553/129‑1 (MQ=255)
                                                                                                                                                            ccTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGAttttttt                                                                                                             >  1:570912/1‑209 (MQ=255)
                                                                                                                                                            ccTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGa                                                                                           >  1:194244/1‑227 (MQ=255)
                                                                                                                                                               ataCTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAat                                                                                                                               >  1:190075/1‑188 (MQ=255)
                                                                                                                                                               ataCTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGa                                                                                           <  1:578744/224‑1 (MQ=255)
                                                                                                                                                                 aCTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTg                                                              <  1:192066/251‑1 (MQ=255)
                                                                                                                                                                    gCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAga                                                                                                                                                                                  <  1:553807/132‑1 (MQ=255)
                                                                                                                                                                           aGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGt                                                                                                                                                                                                                                         <  1:129369/70‑1 (MQ=255)
                                                                                                                                                                              caccacAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAaaat                                                                            <  1:198013/224‑1 (MQ=255)
                                                                                                                                                                                ccacAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGa                                                                                           >  1:595756/1‑207 (MQ=255)
                                                                                                                                                                                ccacAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTTTCTTCTTCag                                               >  1:461961/1‑251 (MQ=255)
                                                                                                                                                                                  acaATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTTTCTTCTTCagtg                                             <  1:229125/251‑1 (MQ=255)
                                                                                                                                                                                   caATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTaaa                                                                               >  1:429967/1‑216 (MQ=255)
                                                                                                                                                                                   caATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTttct                                                      <  1:181848/241‑1 (MQ=255)
                                                                                                                                                                                   caATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTTTCTTCTTCagtga                                            >  1:875695/1‑251 (MQ=255)
                                                                                                                                                                                    aaTAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGa                                                                                           >  1:53034/1‑203 (MQ=255)
                                                                                                                                                                                     aTAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTTTCTTCTTCagtgagt                                          >  1:712440/1‑251 (MQ=255)
                                                                                                                                                                                           gtgtGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATcc                                                                                                <  1:764051/191‑1 (MQ=255)
                                                                                                                                                                                           gtgtGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTTTCTTCTTCagtg                                             <  1:689423/242‑1 (MQ=255)
                                                                                                                                                                                             gtgGAAATTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCt                                                                                                                                                                                        <  1:660226/101‑1 (MQ=255)
                                                                                                                                                                                                 aaaTTAAAATGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGAt                                                                                                                                                                                                                               >  1:9028/1‑58 (MQ=255)
                                                                                                                                                                                                      aaaaTGACCAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTTTCTTCTTCAGTGAGTGCGCCGAGAATTTGTcc                         <  1:396896/251‑1 (MQ=255)
                                                                                                                                                                                                             ccAAGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTTTCTTCTTCAGTGAGTGCGCCGAGAATTTGTCCACTCgg                   >  1:90468/1‑250 (MQ=255)
                                                                                                                                                                                                               aaGATGATCAGGAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTTTCTTCTTCAGTGAGTGCGCCGAGAATTTGTCCACTCGGCga                >  1:32093/1‑251 (MQ=255)
                                                                                                                                                                                                                 gatgatCAGGAAAAACGGACGA‑CAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAga                                                                                                                                                                                  >  1:764624/1‑86 (MQ=255)
                                                                                                                                                                                                                         ggAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGa                                                                                           >  1:814161/1‑166 (MQ=255)
                                                                                                                                                                                                                          gAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCg                                                                                       <  1:732661/169‑1 (MQ=255)
                                                                                                                                                                                                                          gAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTTTCTTCTTCAGTGAGTGCGCCGAGAATTTGTCCACTCGGCGAGATTAGTa        <  1:515529/248‑1 (MQ=255)
                                                                                                                                                                                                                          gAAAAACGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATCGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTTTCTTCTTCAGTGAGTGCGCCGAGAATTTGTCCACTCGGCGAGATTAGTAc       <  1:426626/249‑1 (MQ=255)
                                                                                                                                                                                                                             aaaCGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTTTCTTCTTCAGTGAGTGCGCCGAGAATTTGTCCACTCGGCGAGATTAGTACAGGAt  <  1:220473/251‑1 (MQ=255)
                                                                                                                                                                                                                             aaaCGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTTTCTTCTTCAGTGAGTGCGCCGAGAATTTGTCCACTCGGCGAGATTAGTACAGGAt  <  1:842680/251‑1 (MQ=255)
                                                                                                                                                                                                                             aaaCGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTTTCTTCTTCAGTGAGTGCGCCGAGAATTTGTCCACTCGGCGAGATTAGTACAGGAt  <  1:418236/251‑1 (MQ=255)
                                                                                                                                                                                                                             aaaCGGACGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTTTCTTCTTCAGTGAGTGCGCCGAGAATTTGTCCACTCGGCGAGATTAGTACAGGAt  <  1:149604/251‑1 (MQ=255)
                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                    
TTTGACAATACCTCTTCAAGAGAAAGCATCATGCGGTTAAAACTTTGTCCTACTTGACGTAACTCGATCAACCCTTTGGTTTCAAGATTTTTATTAATTTTTAAATTTCCTATGGCAACGGCATTTGCTGCAAGTTGTAGGTTACGAATAGGCTGACCTATACTGCGTGATAGCCACCACAATAACGGTGTGGAAATTAAAATGACCAAGATGATCAGGAAAAACGGGCGATCAAAAATGTAGTTTAGGATCTCTTTCTGTGCATTGATCTGATTGACAAAATATAAGCTATAAGATTGATTATGCTCAGGATTTAGGTACAGAGAAAACGGACCGACAATTTGAATATTGGAATAGATTTTTTTTAACGGTTGATCCAATGAAGCGTTGTTAAAAATAAATTGACGTACTGATTTTTCTTCTTCAGTGAGTGCGCCGAGAATTTGTCCACTCGGCGAGATTAGTACAGGAT  >  1/1574545‑1575016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑