Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,552,028	T→C	L26P (CTC→CCC)	unknown →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,552,028	0	T	C	100.0%	144.5 / NA	54	L26P (CTC→CCC)	unknown	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (26/28);  total (26/28)

TTAACTACGTCGTTTACATCTGTCATATACTTCACCTCATTGTGTTAAAAGTT‑AAAAATTGGACAACATTCTATGAAAATTTCTCCCTAAAAAC‑TGTTAGCTTGATCAAATATTTGAACATTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCTCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTATGTACATTTCAAATCGGACGGCTTTGAATATACAATTAAAGCTAACATTAACGTGCCTTTATACAA  >  1/1551788‑1552252                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                 ttaactccgttttttACATCTTTCATATACTTCCCCTCATT‑TTTTAAAAATTAAAAAATTGGACAACTTTTTATAAAATTTTCTCCCAAAAAAC‑TTTTAGTTTGATAAAATTTTTGAACATTGTTTTTTTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGt                                                                                                                                                                                                                        <  1:247489/239‑1 (MQ=255)            ttttacttttGTCATATACTTCCCCTCTTTGTGTTAAAATTA‑AAAAATTGAAAAACATTTTATAAAATTTTCTCCC‑AAAAACTTGTTGTCTTGATAAAATTTTTGAACATTGTTTTATTTTTTATTGCATTTTGGGT‑AATTTTCCCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGAt                                                                                                                                                                                                             <  1:874142/242‑1 (MQ=255)                atatttttCATATACTTCCCCTCATTTTGTAAAAATTA‑AAAAATTGAAAAACATTCTATAAAATTTTCTCCCTAAAATC‑TTTTACCTTAATAAAATTTTTGACCTTTTTTTTTTTTTTTATTACATTTAAGAA‑AAATTGCCCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAac                                                                                                                                                                                                         <  1:399784/244‑1 (MQ=255)                    cTGTCATATACTTCACCTCATTGTGTTAAAAGTT‑AAAAATTGGACAACATTCTATGAAAATTTCTCCCTAAAAAC‑TGTTAGCTTGATCAAATATTTGAACATTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAaccac                                                                                                                                                                                                      >  1:167907/1‑250 (MQ=255)                      gTCATATACTTCACCTCATTGTGTTAAAAGTT‑AAAAATTGGACAACATTCTATGAAAATTTCTCCCTAAAAAC‑TGTTAGCTTGATCAAATATTTGAACATTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTc                                                                                                                                                                                                                             >  1:185701/1‑225 (MQ=255)                      gTCATATACTTCACCTCATTGTGTTAAAAGTT‑AAAAATTGGACAACATTCTATGAAAATTTCTCCCTAAAAAC‑TGTTAGCTTGATCAAATATTTGAACATTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCg                                                                                                                                                                                                   >  1:781274/1‑251 (MQ=255)                      gTCATATACTTCACCTCATTGTGTTAAAAGTT‑AAAAATTGGACAACATTCTATGAAAATTTCTCCCTAAAAAC‑TGTTAGCTTGATCAAATATTTGAACATTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCg                                                                                                                                                                                                   >  1:583014/1‑251 (MQ=255)                      gTCATATACTTCACCTCATTGTGTTAAAAGTT‑AAAAATTGGACAACATTCTATGAAAATTTCTCCCTAAAAAC‑TGTTAGCTTGATCAAATATTTGAACATTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCg                                                                                                                                                                                                   >  1:619885/1‑251 (MQ=255)                      gTCATATACTTCACCTCATTGTGTTAAAAGTT‑AAAAATTGGACAACATTCTATGAAAATTTCTCCCTAAAAAC‑TGTTAGCTTGATCAAATATTTGAACATTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCg                                                                                                                                                                                                   >  1:156300/1‑251 (MQ=255)                                tCACCTCATTGTGTTAAAAGTT‑AAAAATTGGACAACATTCTATGAAAATTTCTCCCTAAAAAC‑TGTTAGCTTGATCAAATATTTGAACATTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAg                                                                                                                                                                                         >  1:179922/1‑251 (MQ=255)                                   ccTCTTTGTGTTAAAAGTT‑AAAAATGGGACAACATTCTATAAAATTTTCTCCCTAAAACT‑TGTTAGCTTGATAAAATATTTAAACTTTGTTTTTTTTTTTATTGCTTTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCAt                                                                                                                                                                                      <  1:525690/251‑1 (MQ=255)                                          gtgtTAAAAGTT‑AAAAATTGGACAACATTCTATGAAAATTTCTCCCTAAAAAC‑TGTTAGCTTGATCAAATATTTGAACATTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGt                                                                                                                                                                                                                        >  1:753275/1‑210 (MQ=255)                                          gtgtTAAAAGTT‑AAAAATTGGACAACATTCTATGAAAATTTCTCCCTAAAAAC‑TGTTAGCTTGATCAAATATTTGAACATTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTa                                                                                                                                                                               >  1:706183/1‑251 (MQ=255)                                          gtgtTAAAAGTT‑AAAAATTGGACAACATTCTATGAAAATTTCTCCCTAAAAAC‑TGTTAGCTTGATCAAATATTTGAACATTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTa                                                                                                                                                                               >  1:41338/1‑251 (MQ=255)                                                   attaaaaaaTTGGACAACATTCTATGAAAATTTCTCCCAAAAAAC‑TGTTAGTTTGATAAAATTTTTGAACATTGTTTTTTTTTTTATTGCTTTTTAGAT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAAc                                                                                                                                                                       <  1:58320/247‑1 (MQ=255)                                                     taaaaaaTTGAACAACATTCTATAAAATTTTCTCCCAAAAAAT‑TGTTAGCTTGATAAAATATTTGAACATTTTTTTATTTTTTATTGCATTTTAGAT‑AAATTTCCCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAAc                                                                                                                                                                       <  1:354448/247‑1 (MQ=255)                                                           aTTGAACAACATTCTATAAAATTTTCTCCAAAAAAAC‑TGTTAGCTTGATCAAATATTTAAACATTTTTTTATTTTTTATTGCATTTTAGGA‑AAATTTCCCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTAc                                                                                                                                                               <  1:873779/251‑1 (MQ=255)                                                                    caTTCTATGAAAATTTCTCCCTAAAAAC‑TGTTAGCTTGATCAAATATTTGAACATTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAAt                                                                                                                                                                                 >  1:551249/1‑224 (MQ=255)                                                                            aaaaaTTTCTCCCAAAAAAC‑TTTTAGCTTGATCAAATATTTGAACATTTCTTTATTTTTTATTGCATTTTAGGT‑AAATTTCCCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCtttactttac                                                                                                                                              <  1:335800/250‑1 (MQ=255)                                                                            aaaaaTTTCTCCCAAAAAAC‑TGTTAGTTTGATAAAATATTTGAACTTTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTCACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCtttactttac                                                                                                                                              <  1:699921/250‑1 (MQ=255)                                                                                        cTAAAACC‑TTTTATCTTAATAAAATTTTTAAACTTTGTTTTTTTTTTTATTGCATTTTAGTA‑AAATTTCCCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGa                                                                                                                                                                                                              <  1:768868/175‑1 (MQ=255)                                                                                        aaaaaaaC‑TGTTAGCTTAATCAAATATTTGAACATTTTTTTATTTTTTATTGCATTTTAGAT‑AAATTTCCCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCAccc                                                                                                                                                                                                    <  1:88852/183‑1 (MQ=255)                                                                                                     aGCTTGATCAAATATTTGAACATTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAac                                                                                                                                                                                                                     >  1:738812/1‑156 (MQ=255)                                                                                                      ttttaataaaaTTTTTGAACTTTGTTTTTTTTTTTATTG‑ATTTTAAGTAAAATTTCCCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGAcc                                                                                                                     <  1:275756/243‑1 (MQ=255)                                                                                                                 tatTTGAACATTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGctttac                                                                                                                                                   >  1:67454/1‑210 (MQ=255)                                                                                                                 tatTTGAACATTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGAcc                                                                                                                     >  1:359184/1‑240 (MQ=255)                                                                                                                      aaccatttttttATTTTTTTTTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGAc                                                                                                                      <  1:706831/225‑1 (MQ=255)                                                                                                                             ttttttttttttATTGTTTTTTATGA‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCGCCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATAc                                                                                              <  1:488388/245‑1 (MQ=255)                                                                                                                              cttttttttttttttaaTTTTAGGA‑AAATTACCCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATAc                                                                                              <  1:514587/234‑1 (MQ=255)                                                                                                                                  tttttttATTGCTTTTTAGGA‑AAATTCCCCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTc                                                                                         <  1:785377/250‑1 (MQ=255)                                                                                                                                       ttATTGCATTTTAGGA‑AAATTTCCCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAatt                                                                                    <  1:531152/251‑1 (MQ=255)                                                                                                                                        tgtagaatttagagT‑AAATGTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTGCTTTACTTTCCCGCCTCGTGGGCTGCAGGCCTTGCCGGTTTAAACATCAAATACAGTTCCAatta                                                                                   <  1:686219/238‑1 (MQ=255)                                                                                                                                              tttttAGGA‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAAt                                                                             <  1:316282/250‑1 (MQ=255)                                                                                                                                                   aGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGAt                                                                                                                                                                                                             >  1:591626/1‑118 (MQ=255)                                                                                                                                                        aaaTTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTa                                                                    >  1:843111/1‑251 (MQ=255)                                                                                                                                                             tccccGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTATGTAc                                                               <  1:709757/249‑1 (MQ=255)                                                                                                                                                                               gCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTAttt                                                                                >  1:809579/1‑216 (MQ=255)                                                                                                                                                                                         tctATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTATGTACATTTCAAATCGGACGGCTTTGAATATAc                                   <  1:164353/251‑1 (MQ=255)                                                                                                                                                                                          ctATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATAc                                                                                              <  1:704086/191‑1 (MQ=255)                                                                                                                                                                                          ctATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTATGTACATTTCAAATCGGACGGCTTTGAATATACa                                  >  1:818873/1‑251 (MQ=255)                                                                                                                                                                                            aTTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTAc                                                                                                                                                               <  1:476718/124‑1 (MQ=255)                                                                                                                                                                                            aTTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTATGt                                                                 >  1:457902/1‑218 (MQ=255)                                                                                                                                                                                            aTTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTATGTAc                                                               <  1:105197/220‑1 (MQ=255)                                                                                                                                                                                            aTTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTATGTACATTTCAAATCGGACGGCTTTGAATATAc                                   >  1:654191/1‑248 (MQ=255)                                                                                                                                                                                            aTTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTATGTACATTTCAAATCGGACGGCTTTGAATATACa                                  >  1:106040/1‑249 (MQ=255)                                                                                                                                                                                            aTTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTATGTACATTTCAAATCGGACGGCTTTGAATATACAAt                                >  1:552027/1‑251 (MQ=255)                                                                                                                                                                                            aTTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTATGTACATTTCAAATCGGACGGCTTTGAATATACAAt                                >  1:341896/1‑251 (MQ=255)                                                                                                                                                                                                       cGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTATGTACATTTCAAATCGGACGGCTTTGAATATACAATTAAAGCTAACa                     >  1:185599/1‑251 (MQ=255)                                                                                                                                                                                                         cAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTATGTACATTTCAAATCGGACGGCTTTGAATATACAATTAAAGCTAACAtt                   <  1:437466/251‑1 (MQ=255)                                                                                                                                                                                                         cAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTATGTACATTTCAAATCGGACGGCTTTGAATATACAATTAAAGCTAACAt                    <  1:694940/250‑1 (MQ=255)                                                                                                                                                                                                            aaaaCCACCGCACTTTCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTATGTACATTTCAAATCGGACGGCTTTGAATATACAATTAAAGCTAACATTAAc                <  1:891553/251‑1 (MQ=255)                                                                                                                                                                                                                          ttCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAg                                                                                            <  1:229651/161‑1 (MQ=255)                                                                                                                                                                                                                          ttCAATGGGAACTTATGATTTAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTATGTACATTTCAAATCGGACGGCTTTGAATATACAATTAAAGCTAACATTAACGTGCCTTTATacaa  >  1:153937/1‑251 (MQ=255)                                                                                                                                                                                                                                            tttAGCGCCCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTAc                                                                                                                                                               >  1:604820/1‑76 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                 TTAACTACGTCGTTTACATCTGTCATATACTTCACCTCATTGTGTTAAAAGTT‑AAAAATTGGACAACATTCTATGAAAATTTCTCCCTAAAAAC‑TGTTAGCTTGATCAAATATTTGAACATTGCTTTATTTTTTATTGCATTTTAGGT‑AAATTTACCCGCCGATTTGAGAAGCATTTTCGCTCTATTAAAAGTAACGCAAAAAACCACCGCACTTTCAATGGGAACTTATGATTTAGCGCTCGTTCTAAGTAACACAATGATCAACCACCCGGAAGGAATAGCATGAAATTACGCAAAACCTTTTTACTTGTCGCTTTACTTTACTTTCCCGCCGCGTGGGCTGCAGACCTTGCCGGTTTAAACATCAAATACAGTTCCAATTATTTAATGCCGGCTTATGTACATTTCAAATCGGACGGCTTTGAATATACAATTAAAGCTAACATTAACGTGCCTTTATACAA  >  1/1551788‑1552252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑