Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,494,018 G→A A60T (GCG→ACG)  unknown → LSU rRNA pseudouridine(2457) synthase (EC 5.4.99.20)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,494,0180GA100.0% 184.2 / NA 69A60T (GCG→ACG) unknownLSU rRNA pseudouridine(2457) synthase (EC 5.4.99.20)
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (32/37);  total (32/37)

ACTTAAATCTTATGCAACCGACATCTCTTCAGCGACAAAAAAACGAGGCGAAAATCTGCAAAAGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAGCGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCACTTTTTTATTTTCGCCAAAATGGCGTTTGCGATGATTCTGGGCGGCGGCAGGTATCGGCATTGCTTCCGGCGCGGGGTTTTATTTCGACGCCATGGT  >  1/1493778‑1494261
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                   
acttaAATCTTATGCAACCGACATCTCTTCAGCGACAAAAAAACGAGGCGAAAATCTGCAAAAGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCaa                                                                                                                                                                                                                                           >  1:623292/1‑251 (MQ=255)
 cttaAATCTTATGCAACCGACATCTCTTCAGCGACAAAAAAACGAGGCGAAAATCTGCAAAAGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCaa                                                                                                                                                                                                                                           >  1:854031/1‑250 (MQ=255)
 cttaAATCTTATGCAACCGACATCTCTTCAGCGACAAAAAAACGAGGCGAAAATCTGCAAAAGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAAc                                                                                                                                                                                                                                          <  1:822176/251‑1 (MQ=255)
  ttaAATCTTATGCAACCGACATCTCTTCAGCGACAAAAAAACGAGGCGAAAATCTGCAAAAGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAAcc                                                                                                                                                                                                                                         <  1:325683/251‑1 (MQ=255)
           aTGCAACCGACATCTCTTCAGCGACAAAAAAACGAGGCGAAAATCTGCAAAAGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACgg                                                                                                                                                                                                                                                  <  1:645617/233‑1 (MQ=255)
           aTGCAACCGACATCTCTTCAGCGACAAAAAAACGAGGCGAAAATCTGCAAAAGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAAtt                                                                                                                                                                                                                                >  1:757282/1‑251 (MQ=255)
                        ctctTCAGCGACAAAAAAACGAGGCGAAAATCTGCAAAAGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGaaaa                                                                                                                                                                                                                    >  1:206375/1‑250 (MQ=255)
                                                   aaaTCTGCAAAAGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACt                                                                                                                                                                                        <  1:534613/251‑1 (MQ=255)
                                                     aTCTGCAAAAGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTaa                                                                                                                                                                                      >  1:735449/1‑251 (MQ=255)
                                                        tGCAAAAGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAagag                                                                                                                                                                                   <  1:11874/251‑1 (MQ=255)
                                                        tGCAAAAGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAagag                                                                                                                                                                                   <  1:727291/251‑1 (MQ=255)
                                                        tGCAAAAGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAagag                                                                                                                                                                                   <  1:685683/251‑1 (MQ=255)
                                                        tGCAAAAGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAagag                                                                                                                                                                                   <  1:598401/251‑1 (MQ=255)
                                                           aaaaGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCGCCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAAc                                                                                                                                                                                <  1:239311/251‑1 (MQ=255)
                                                           aaaaGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAAc                                                                                                                                                                                <  1:852462/251‑1 (MQ=255)
                                                           aaaaGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAAc                                                                                                                                                                                <  1:519358/251‑1 (MQ=255)
                                                               gTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTa                                                                                                                                                                            >  1:560481/1‑251 (MQ=255)
                                                                tGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTAt                                                                                                                                                                           <  1:634216/251‑1 (MQ=255)
                                                                    gTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTgctgtct                                                                                                                                                                        <  1:77631/250‑7 (MQ=255)
                                                                     ttGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAAtt                                                                                                                                                                      <  1:751469/251‑1 (MQ=255)
                                                                     ttGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAAtt                                                                                                                                                                      <  1:529775/251‑1 (MQ=255)
                                                                     ttGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAAtt                                                                                                                                                                      <  1:450719/251‑1 (MQ=255)
                                                                     ttGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAAt                                                                                                                                                                       <  1:855710/250‑1 (MQ=255)
                                                                       gATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTc                                                                                                                                                                                                  <  1:395843/221‑1 (MQ=255)
                                                                       gATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAAtt                                                                                                                                                                      >  1:629079/1‑249 (MQ=255)
                                                                        aTTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTAc                                                                                                                                                                    <  1:856457/250‑1 (MQ=255)
                                                                         tttCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTc                                                                                                                                                                                                  >  1:768806/1‑219 (MQ=255)
                                                                          ttCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTa                                                                                                                                                                 <  1:813495/251‑1 (MQ=255)
                                                                                        ttttATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAAt                                                                                                                                                              <  1:248973/240‑1 (MQ=255)
                                                                                                  aCGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGaataat                                                                                                                                         <  1:67339/251‑1 (MQ=255)
                                                                                                    gCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAAtt                                                                                                                                                                      >  1:362916/1‑220 (MQ=255)
                                                                                                     cATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTAt                                                                                                                                                                           <  1:560938/214‑1 (MQ=255)
                                                                                                               aTTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTa                                                                                                                            >  1:346525/1‑251 (MQ=255)
                                                                                                                      aaCGCAAACATATTCCCGCCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAg                                                                                                                      <  1:217890/250‑1 (MQ=255)
                                                                                                                            aaCATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAGAACGAACTAAGAGAAc                                                                                                                                                                                >  1:452151/1‑186 (MQ=255)
                                                                                                                            aaCATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAagag                                                                                                                                                                                   >  1:330473/1‑183 (MQ=255)
                                                                                                                            aaCATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAAc                                                                                                                                                                                >  1:83051/1‑186 (MQ=255)
                                                                                                                            aaCATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGt                                                                                                                                                                             <  1:415755/189‑1 (MQ=255)
                                                                                                                              cATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTAt                                                                                                                                                                           <  1:287814/189‑1 (MQ=255)
                                                                                                                              cATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGaata                                                                                                                                           >  1:14268/1‑221 (MQ=255)
                                                                                                                              cATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGgcg                                                                                                              >  1:567894/1‑250 (MQ=255)
                                                                                                                                tatTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAaga                                                                                                                                                                                    >  1:711055/1‑178 (MQ=255)
                                                                                                                                tatTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACAAACTAagag                                                                                                                                                                                   >  1:448134/1‑179 (MQ=255)
                                                                                                                                  ttCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTAt                                                                                                                                                                           >  1:109232/1‑185 (MQ=255)
                                                                                                                                      cACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAAtt                                                                                                                               >  1:366932/1‑225 (MQ=255)
                                                                                                                                              ggCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAAtt                                                                                                                                                                      >  1:579127/1‑178 (MQ=255)
                                                                                                                                              ggCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCACttttt                                                                                             >  1:56770/1‑251 (MQ=255)
                                                                                                                                                     aGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAAc                                                                                                                                                                                                                   <  1:449101/126‑1 (MQ=255)
                                                                                                                                                            aTTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCTCTTTTTTATTTTCGCCaaaa                                                                               <  1:315239/251‑1 (MQ=255)
                                                                                                                                                             ttGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCAc                                                                                                  <  1:739223/231‑1 (MQ=255)
                                                                                                                                                             ttGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCACTTTTTTATTTTCGCCAAAAt                                                                              >  1:3895/1‑251 (MQ=255)
                                                                                                                                                               gatgaAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAAtt                                                                                                                                                                      <  1:122566/161‑1 (MQ=255)
                                                                                                                                                               gatgaAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACtt                                                                                                                                                                  <  1:195232/165‑1 (MQ=255)
                                                                                                                                                                      ggCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCACTTTTTTATTTTCGCCAAAATGGCGTTTg                                                                      <  1:371394/250‑1 (MQ=255)
                                                                                                                                                                        cgcAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCACTTTTTTATTTTCGCCAAAATGGCGTTTGCga                                                                   <  1:306998/251‑1 (MQ=255)
                                                                                                                                                                          cAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTAt                                                                                                                                                                           <  1:92729/145‑1 (MQ=255)
                                                                                                                                                                            aTCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAagag                                                                                                                                                                                   <  1:298182/135‑1 (MQ=255)
                                                                                                                                                                            aTCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCACTTTTTTATTTTCGCCAAAATGGCGTTTGCgatgat                                                               >  1:298952/1‑251 (MQ=255)
                                                                                                                                                                                      gcgcAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCACTTTTTTATTTTCGCCAAAATGGCGTTTGCGATGATTCTGggcgg                                                      >  1:175202/1‑250 (MQ=255)
                                                                                                                                                                                           gAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATc                                                                                                                                                                          <  1:715315/129‑1 (MQ=255)
                                                                                                                                                                                           gAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCACTTTTTTATTTTCGCCAAAATGGCGTTTGCGATGATTCTGGGCGGCGGCAg                                                >  1:139519/1‑251 (MQ=255)
                                                                                                                                                                                           gAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCACTTTTTTATTTTCGCCAAAATGGCGTTTGCGATGATTCTGGGCGGCGGCAg                                                >  1:553185/1‑251 (MQ=255)
                                                                                                                                                                                           gAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCACTTTTTTATTTTCGCCAAAATGGCGTTTGCGATGATTCTGGGCGGCGGCAg                                                >  1:98244/1‑251 (MQ=255)
                                                                                                                                                                                                      cATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAAtt                                                                                                                                                                      >  1:675418/1‑122 (MQ=255)
                                                                                                                                                                                                       atatCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCACTTTTTTATTTTCGCCAAAATGGCGTTTGCGATGATTCTGGGCGGCGGCAGGTATCGGCATTg                                    >  1:30755/1‑251 (MQ=255)
                                                                                                                                                                                                             ggTTTCCGACGTTACGTCTGATTCGTTATCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCACTTTTTTATTTTCGCCAAAATGGCGTTTGCGATGATTCTGGGCGGCGGCAGGTATCGGCATTGCTTCCg                              >  1:262213/1‑251 (MQ=255)
                                                                                                                                                                                                                                        aTCAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCACTTTTTTATTTTCGCCAAAATGGCGTTTGCga                                                                   >  1:663037/1‑187 (MQ=255)
                                                                                                                                                                                                                                          cAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACa                                                                                                                                                 <  1:858036/107‑1 (MQ=255)
                                                                                                                                                                                                                                          cAATTAACGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCACTTTTTTATTTTCGCCAAAATGGCGTTTGCGATGATTCTGGGCGGCGGCAGGTATCGGCATTGCTTCCGGCGCGGGGTTTTATTTCGACGCCATGGt  >  1:332368/1‑250 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                   
ACTTAAATCTTATGCAACCGACATCTCTTCAGCGACAAAAAAACGAGGCGAAAATCTGCAAAAGTGCGGTTGATTTCCGAACCGGATTTTTTATGGCAACGCATTTCGCCTATTCGCGAACGCAAACATATTCCCACCGCGTGGCTGGAAGTGAAGATTGATGAAGGGCGCAATCGGCAGGTGCGCAGAATGACGGCGCATATCGGGTTTCCGACGTTACGTCTGATTCGTTATCAATTAGCGGGATTCAACCTGCAAAATTTGATGCCGAAAACCTACCGCACTTTAACTCAAAACGAACTAAGAGAACTGTATCAATTACTTAAATTAACGATTTAACATGAATAATTTATTAAATTTTATTGAAGCGTCGGCGCGCGACAGCCACTTTTTTATTTTCGCCAAAATGGCGTTTGCGATGATTCTGGGCGGCGGCAGGTATCGGCATTGCTTCCGGCGCGGGGTTTTATTTCGACGCCATGGT  >  1/1493778‑1494261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑