Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,483,936	C→T	T295T (ACC→ACT)	unknown →	Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,483,936	0	C	T	100.0%	202.2 / NA	75	T295T (ACC→ACT)	unknown	Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (35/40);  total (35/40)

TTAATGCGCTATCTAACTATATTTCCCATACCGAACGTGTCATCACACTAGAAGATACTGCCGAGCTGCGTTTGGAACAGCCTCATGTTGTACGCCTGGAAACGCGTTTAGCCGGCGTTGAGCATACAGGCGAAGTTACTATGCAAGACTTAGTAATAAATGCATTGCGTATGCGTCCTGAGCGTATTATTGTGGGCGAATGCCGTGGTGGAGAAGCATTCCAAATGTTACAAGCAATGAATACCGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATAGCCCTCGCGATGCAACATCTCGCTTGGA‑A‑AGTATGGTTATGATGTCGAATGCATCCCTACCGTTAGAGGCAATTCGCCGTAATATCTCTTCAGCAGTAAACATAATAGTGCAGGCGTCCCGTTTAAATGATGGTTCAAGAAAAATTATGAATATCACTGAGGTTATGGGAATGGAAAACGGTCAAAT  >  1/1483692‑1484160                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                   ttaATGCGCTATCTAATTATATTTCCCATACCGAACGTGTCATCACATTAGAAGATACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCa                                                                                                                                                                                                                               >  1:519060/1‑250 (MQ=255)           aTCTAATTATATTTCCCATACCGAACGTGTCATCACATTAGAAGATACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTc                                                                                                                                                                                                                                <  1:471849/239‑1 (MQ=255)           aTCTAATTATATTTCCCATACCGAACGTGTCATCACATTAGAAGATACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTa                                                                                                                                                                                                                    >  1:216418/1‑251 (MQ=255)           aTCTAATTATATTTCCCATACCGAACGTGTCATCACATTAGAAGATACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTa                                                                                                                                                                                                                    >  1:188748/1‑251 (MQ=255)              taattataTTTCCCATACCGAACGTGTCATCACATTAGAAGATACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGt                                                                                                                                                                                                                 >  1:473526/5‑251 (MQ=255)                   atatTTCCCATACCGAACGTGTCATCACATTAGAAGATACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACg                                                                                                                                                                                                            >  1:5915/1‑251 (MQ=255)                       ttCCCATACCGAACGTGTCATCACATTAGAAGATACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCa                                                                                                                                                                                                                               <  1:109779/228‑1 (MQ=255)                       ttCCCATACCGAACGTGTCATCACATTAGAAGATACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTg                                                                                                                                                                                                         >  1:483751/1‑250 (MQ=255)                       ttCCCATACCGAACGTGTCATCACATTAGAAGATACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTg                                                                                                                                                                                                         >  1:89481/1‑250 (MQ=255)                                  aaCGTGTCATCACATTAGAAGATACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATac                                                                                                                                                                                              <  1:363174/250‑2 (MQ=255)                                      tgtCATCACATTAGAAGATACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCt                                                                                                                                                                                          >  1:803416/1‑250 (MQ=255)                                         catcaCATTAGAAGATACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTcggg                                                                                                                                                                                      <  1:298321/251‑3 (MQ=255)                                          atcaCATTAGAAGATACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTcggga                                                                                                                                                                                     <  1:847545/251‑4 (MQ=255)                                              cattAGAAGATACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTcggg                                                                                                                                                                                      >  1:664584/4‑244 (MQ=255)                                              cattAGAAGATACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCa                                                                                                                                                                                 >  1:846900/4‑251 (MQ=255)                                                ttAGAAGATACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATATAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCa                                                                                                                                                                                 <  1:426233/248‑1 (MQ=255)                                                     agaTACTGCTGAATTGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGt                                                                                                                                                                                                                 >  1:354185/1‑212 (MQ=255)                                                          ctgctgaattGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATaccc                                                                                                                                                                                            <  1:113111/219‑4 (MQ=255)                                                          ctgctgaattGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTg                                                                                                                                                                     >  1:829310/10‑251 (MQ=255)                                                           tgctgaattGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTgg                                                                                                                                                                    <  1:149090/243‑1 (MQ=255)                                                            gctgaattGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGa                                                                                                                                                                   >  1:496729/8‑251 (MQ=255)                                                                aattGCGTTTGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGagag                                                                                                                                                                <  1:526348/247‑4 (MQ=255)                                                                       tttGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTa                                                                                                                                                      <  1:452672/251‑1 (MQ=255)                                                                       tttGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTa                                                                                                                                                      <  1:323908/251‑1 (MQ=255)                                                                       tttGGAACAACCTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTa                                                                                                                                                      <  1:383791/251‑1 (MQ=255)                                                                                accTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTc                                                                                                                                                                                                                      <  1:655922/179‑1 (MQ=255)                                                                                accTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACAtctc                                                                                                                                                                          <  1:28837/223‑1 (MQ=255)                                                                                accTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCg                                                                                                                                              <  1:475616/249‑1 (MQ=255)                                                                                accTCATGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGa                                                                                                                                             >  1:782473/2‑251 (MQ=255)                                                                                     aTGTTGTACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGt                                                                                                                                                        <  1:655968/235‑1 (MQ=255)                                                                                       gttgtACGCCTTGAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGcgt                                                                                                                                       >  1:407762/1‑248 (MQ=255)                                                                                               ccttgAAACACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATacc                                                                                                                                                                                             >  1:126127/5‑188 (MQ=255)                                                                                                    aaaCACGTTTAGCCGGCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGttggaa                                                                                                                         >  1:41889/1‑247 (MQ=255)                                                                                                                   gCGTTGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGt                                                                                                                                                >  1:643934/1‑213 (MQ=255)                                                                                                                       tGAGCATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAatattg                                                                                                      <  1:117009/251‑3 (MQ=255)                                                                                                                           cATACAGGCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAatattgca                                                                                                    <  1:292012/249‑5 (MQ=255)                                                                                                                                 ggCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGttgga                                                                                                                          <  1:15671/221‑4 (MQ=255)                                                                                                                                  gCGAGGTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAatattgcatctgcag                                                                                             <  1:538650/249‑12 (MQ=255)                                                                                                                                   cgaggTTACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACGCTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAatattgcatctgcagtaa                                                                                          <  1:28129/247‑15 (MQ=255)                                                                                                                                        ttACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAatattgcatctgcagtaaatatc                                                                                     <  1:689306/251‑20 (MQ=255)                                                                                                                                        ttACTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAatattgcatctgcagtaaatatc                                                                                     <  1:215324/251‑20 (MQ=255)                                                                                                                                          aCTATGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGACGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTa                                                                                                                                                      <  1:754580/184‑1 (MQ=255)                                                                                                                                             aTGCAGGATTTAGTAATAAATGCACTACGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAAc                                                                                                                                                                               <  1:237478/158‑1 (MQ=255)                                                                                                                                                                  gcactacGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAatat                                                                                                        <  1:872275/200‑1 (MQ=255)                                                                                                                                                                     ctacGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAatattgcatctgcagtaaatatc                                                                                     <  1:275003/219‑20 (MQ=255)                                                                                                                                                                       acGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAatattgcatctgcagtaaat                                                                                        <  1:743762/216‑17 (MQ=255)                                                                                                                                                                       acGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAatattgcatc                                                                                                  <  1:659428/206‑7 (MQ=255)                                                                                                                                                                       acGTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAatat                                                                                                        >  1:776148/2‑201 (MQ=255)                                                                                                                                                                         gTATGCGTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTa                                                                                                                                                      <  1:257180/153‑1 (MQ=255)                                                                                                                                                                               gTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGag                                                                                                                                                                  <  1:628576/137‑2 (MQ=255)                                                                                                                                                                               gTCCTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGcgtc                                                                                                                                      >  1:175010/1‑160 (MQ=255)                                                                                                                                                                                  cTGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAATATTGCATCTGCAGTAAATATCATCGTACAAGCCTCCCGTTTAAATGATGGAACAAGAAAAAtc                                           <  1:281034/251‑2 (MQ=255)                                                                                                                                                                                   tGAGCGTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAATATTGCATCTGCAGTAAATATCATCGTACAAGCCTCCCGTTTAAATGATGGAACAAGAAAAAtca                                          <  1:782966/251‑3 (MQ=255)                                                                                                                                                                                        gTATTATCGTAGGTGAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACAt                                                                                                                                                                             >  1:305969/1‑117 (MQ=255)                                                                                                                                                                                            tatcgtaggtgAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAATATTGCATCTGCAGTAAATATCATCGTACAAGCCTCCCGTTTAAATGATGGAACAAGAAAAATCATGAatatta                                 >  1:405504/11‑249 (MQ=255)                                                                                                                                                                                             atcgtaggtgAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAAc                                                                                                                                                                               <  1:788163/101‑1 (MQ=255)                                                                                                                                                                                             atcgtaggtgAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGag                                                                                                                                                                  <  1:91765/114‑2 (MQ=255)                                                                                                                                                                                             atcgtaggtgAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGAGAGAGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAatattg                                                                                                      >  1:807965/10‑181 (MQ=255)                                                                                                                                                                                             atcgtaggtgAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAATATTGCATCTGCAGTAAATATCATCGTACAAGCCTCCCGTTTAAATGATGGAACAAGAAAAATCATGAatattac                                <  1:563338/242‑4 (MQ=255)                                                                                                                                                                                             atcgtaggtgAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAATATTGCATCTGCAGTAAATATCATCGTACAAGCCTCCCGTTTAAATGATGGAACAAGAAAAATCATGAatatta                                 >  1:418153/10‑248 (MQ=255)                                                                                                                                                                                             atcgtaggtgAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAATATTGCATCTGCAGTAAATATCATCGTACAAGCCTCCCGTTTAAATGATGGAACAAGAAAAATCATGAatatta                                 >  1:629222/10‑248 (MQ=255)                                                                                                                                                                                              tcgtaggtgAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAGCACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTatg                                                                                                                                                    >  1:346730/9‑134 (MQ=255)                                                                                                                                                                                              tcgtaggtgAATGCCGTGGTGGAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTAcc                                                                                                                                >  1:706188/9‑154 (MQ=255)                                                                                                                                                                                                                gtggAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTatga                                                                                                                                                   >  1:330552/1‑117 (MQ=255)                                                                                                                                                                                                                 tggAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAATATTGCATCTGCAGTAAATATCATCGTACAAGCCTCCCGTTTAAATGATGGAACAAGAAAAATCATGAATATTACTGAAATAATGGGTATGGaaa            <  1:462289/251‑1 (MQ=255)                                                                                                                                                                                                                 tggAGAAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAATATTGCATCTGCAGTAAATATCATCGTACAAGCCTCCCGTTTAAATGATGGAACAAGAAAAATCATGAATATTACTGAAATAATGGGTATGGaa             <  1:676093/250‑1 (MQ=255)                                                                                                                                                                                                                     gaAGCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAATATTGCATCTGCAGTAAATATCATCGTACAAGCCTCCCGTTTAAATGATGGAACAAGAAAAATCATGAATATTACTGAAATAATGGGTATGGaaaatgg        >  1:390491/1‑248 (MQ=255)                                                                                                                                                                                                                        gCATTCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATaccc                                                                                                                                                                                            >  1:877770/1‑67 (MQ=255)                                                                                                                                                                                                                           ttCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAatattgcatctgcagtaaat                                                                                        <  1:316392/165‑17 (MQ=255)                                                                                                                                                                                                                           ttCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAATATTGCATCTGCAGTAAATATCATCGTACAAGCCTCCCGTTTAAATGATGGAACAAGAAAAATCATGAatattac                                >  1:846452/1‑218 (MQ=255)                                                                                                                                                                                                                           ttCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAATATTGCATCTGCAGTAAATATCATCGTACAAGCCTCCCGTTTAAATGATGGAACAAGAAAAATCATGAATATTACTGAAATAATGGGTATGGAAAATGGGCAAAt  >  1:145787/1‑251 (MQ=255)                                                                                                                                                                                                                           ttCCAGATGTTACAAGCGATGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAATATTGCATCTGCAGTAAATATCATCGTACAAGCCTCCCGTTTAAATGATGGAACAAGAAAAATCATGAATATTACTGAAATAATGGGTATGGAAAATGGGCAAAt  >  1:775030/1‑251 (MQ=255)                                                                                                                                                                                                                                          gcgaTGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAatat                                                                                                        >  1:12367/4‑134 (MQ=255)                                                                                                                                                                                                                                           cgaTGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAatattgcat                                                                                                   <  1:30257/136‑6 (MQ=255)                                                                                                                                                                                                                                            gaTGAACACTGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATACCCCTCGGGATGCAACATCTCGATTGGA‑G‑AGTATGGTTATGATGTCGAATGCGTCCCTACCGTTGGAAGCAATTCGCCGTAATATTGCATCTGCAGTAAATATCATCGTACAAGCCTCCCGTTTAAATGATGGAACAAGAAAAATCATGAATATTACTGaaataatgggtatgga              >  1:737220/2‑207 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                   TTAATGCGCTATCTAACTATATTTCCCATACCGAACGTGTCATCACACTAGAAGATACTGCCGAGCTGCGTTTGGAACAGCCTCATGTTGTACGCCTGGAAACGCGTTTAGCCGGCGTTGAGCATACAGGCGAAGTTACTATGCAAGACTTAGTAATAAATGCATTGCGTATGCGTCCTGAGCGTATTATTGTGGGCGAATGCCGTGGTGGAGAAGCATTCCAAATGTTACAAGCAATGAATACCGGTCACGATGGTTCTATGTCAACGTTGCACGCAAATAGCCCTCGCGATGCAACATCTCGCTTGGA‑A‑AGTATGGTTATGATGTCGAATGCATCCCTACCGTTAGAGGCAATTCGCCGTAATATCTCTTCAGCAGTAAACATAATAGTGCAGGCGTCCCGTTTAAATGATGGTTCAAGAAAAATTATGAATATCACTGAGGTTATGGGAATGGAAAACGGTCAAAT  >  1/1483692‑1484160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑