Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,483,348 T→C A99A (GCT→GCC)  unknown → Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,483,3480TC100.0% 170.9 / NA 62A99A (GCT→GCC) unknownType II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (31/31);  total (31/31)

TGATATTGAAAAGATTGATGAACTTCAAAGTGAAAGAAGCTCACTGGTAAACGAACTGGTTCAGATTGTTAACCGTGTTGCCAATAAAAGCGGTGCTTATTTGACCTCAGCCGATACTCTAGTTATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGACCATTACGAGATCTCATGGCTGACGATACTATAAATGATATTTTAGTTAATGGCCCTAATGACATCTGGGTTGAACGTGCTGGTATTCTGGAAAAAACTGATAAAGAATTTGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGCCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCTGATGGCAGCCGTTTAAATGTTGTTATTGCACCGATTGCATTAGATGGCACATCCATTTCTATTCGTAAATTCAGTAAGAATAAAAAAACATTGCAAGAGCTTG  >  1/1483105‑1483580
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                        
tGATGTTGAAAAGATTGATGAACTTCAAAGTGAAAGAAGCTCATTAGTAAACGAACTGGTTCAGATTGTTAATCGTATTGCCAATAAAAGTAACACTTATTTGACGTCATCCGATGCACTGGTTATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTc                                                                                                                                                                                                                                   <  1:211039/251‑1 (MQ=255)
                             gTGAAAGAAGCTCATTAGTAAACGAACTGGTTCAGATTGTTAATCGTATTGCCAATAAAAGTAACACTTATTTGACGTCATCCGATGCACTGGTTATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTc                                                                                                                                                                                                                                   <  1:23339/222‑1 (MQ=255)
                                      gctcattagTAAACGAACTGGTTCAGATTGTTAATCGTATTGCCAATAAAAGTAACACTTATTTGACGTCATCCGATGCACTGGTTATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAAc                                                                                                                                                                                               >  1:378392/9‑249 (MQ=255)
                                           ttagTAAACGAACTGGTTCAGATTGTTAATCGTATTGCCAATAAAAGTAACACTTATTTGACGTCATCCGATGCACTGGTTATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGt                                                                                                                                                                                                                                       <  1:473317/201‑1 (MQ=255)
                                           ttagTAAACGAACTGGTTCAGATTGTTAATCGTATTGCCAATAAAAGTAACACTTATTTGACGTCATCCGATGCACTGGTTATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTaa                                                                                                                                                                                         >  1:719901/4‑250 (MQ=255)
                                               tAAACGAACTGGTTCAGATTGTTAATCGTATTGCCAATAAAAGTAACACTTATTTGACGTCATCCGATGCACTGGTTATGGCTGAAGTTGTTGCTGATGAGATTGAGGGTTATGGTCCGTTACAGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGa                                                                                                                                                                                     <  1:91403/250‑1 (MQ=255)
                                               tAAACGAACTGGTTCAGATTGTTAATCGTATTGCCAATAAAAGTAACACTTATTTGACGTCATCCGATGCACTGGTTATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGat                                                                                                                                                                                    >  1:203429/1‑251 (MQ=255)
                                                     aaCTGGTTCAGATTGTTAATCGTATTGCCAATAAAAGTAACACTTATTTGACGTCATCCGATGCACTGGTTATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCa                                                                                                                                                                              >  1:865880/1‑251 (MQ=255)
                                                               gATTGTTAATCGTATTGCCAATAAAAGTAACACTTATTTGACGTCATCCGATGCACTGGTTATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACt                                                                                                                                                                                       <  1:338096/232‑1 (MQ=255)
                                                                                  aataaaagtaacacTTATTTGACGTCATCCGATGCACTGGTTATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCgtcg                                                                                                                                                 >  1:15157/14‑248 (MQ=255)
                                                                                                 tATTTGACGTCATCCGATGCACTGGTTATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATtgatg                                                                                                                                         >  1:835611/1‑244 (MQ=255)
                                                                                                 tATTTGACGTCATCCGATGCACTGGTTATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATtgatg                                                                                                                                         >  1:287448/1‑244 (MQ=255)
                                                                                                   tttGACGTCATCCGATGCACTGGTTATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTc                                                                                                                                <  1:865849/251‑1 (MQ=255)
                                                                                                                        ggTTATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGAc                                                                                                                     <  1:845249/240‑1 (MQ=255)
                                                                                                                        ggTTATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTa                                                                                                            >  1:521936/2‑250 (MQ=255)
                                                                                                                          ttATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTAccc                                                                                                         <  1:758068/251‑2 (MQ=255)
                                                                                                                                   aaaTTGTTGCTGATGAGATTGAGGGTTATAGTCCGTTTCGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTAt                                                                                                                                                                                                                                     <  1:184739/118‑1 (MQ=255)
                                                                                                                                      ttgttgCTGATGAGATTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATtgatg                                                                                                                                         >  1:353882/1‑207 (MQ=255)
                                                                                                                                                   gaTTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATtgatg                                                                                                                                         >  1:742115/1‑194 (MQ=255)
                                                                                                                                                    aTTGAGGGTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAAtgttgtaat                                                                               <  1:188624/251‑4 (MQ=255)
                                                                                                                                                         gggTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGc                                                                                                <  1:594915/229‑1 (MQ=255)
                                                                                                                                                         gggTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAAt                                                                                       <  1:329677/238‑1 (MQ=255)
                                                                                                                                                          ggTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCAc                                                                          >  1:698670/1‑250 (MQ=255)
                                                                                                                                                           gTTATGGTCCGTTACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCg                                                                        >  1:698551/1‑251 (MQ=255)
                                                                                                                                                                 gtccgttACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGcg                                                                  >  1:41424/6‑250 (MQ=255)
                                                                                                                                                                       tACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGAt                                                            <  1:705393/251‑1 (MQ=255)
                                                                                                                                                                       tACGGGATCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGAt                                                            <  1:823350/251‑1 (MQ=255)
                                                                                                                                                                             aTCTCGTGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGAc                                                                                                                     <  1:630038/188‑1 (MQ=255)
                                                                                                                                                                                 cgtGGCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCa                                                  <  1:863456/249‑1 (MQ=255)
                                                                                                                                                                                     gCTGACGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACt                                                                                                             <  1:42072/188‑1 (MQ=255)
                                                                                                                                                                                          cGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACt                                                                                                                                                                                       <  1:754147/109‑1 (MQ=255)
                                                                                                                                                                                          cGATACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGAt                                                            <  1:780385/232‑1 (MQ=255)
                                                                                                                                                                                            aTACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCAc                                                                                                                             >  1:113331/1‑165 (MQ=255)
                                                                                                                                                                                             tACTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTCCATTCGTa                                      <  1:834489/251‑1 (MQ=255)
                                                                                                                                                                                               cTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATtg                                                                                                                                            <  1:453546/147‑1 (MQ=255)
                                                                                                                                                                                               cTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTCCATTCGTaag                                    >  1:366335/1‑250 (MQ=255)
                                                                                                                                                                                               cTATAAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTCCATTCGTaag                                    >  1:852340/1‑250 (MQ=255)
                                                                                                                                                                                                 ataAATGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAg                                                                                                                          >  1:63955/1‑163 (MQ=255)
                                                                                                                                                                                                   aaaTGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTCCATTCGTAAGTTCa                                >  1:182602/1‑251 (MQ=255)
                                                                                                                                                                                                    aaTGATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGAc                                                                                                                     <  1:832628/165‑1 (MQ=255)
                                                                                                                                                                                                       gATATCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGTTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAAtg                                                                                      >  1:37101/1‑193 (MQ=255)
                                                                                                                                                                                                        atatCTTAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTCCATTCGTaagt                                   >  1:46413/1‑241 (MQ=255)
                                                                                                                                                                                                          atcttAGTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTCCATTCGTAAGTTCAGTAAGag                         >  1:258190/4‑250 (MQ=255)
                                                                                                                                                                                                                gTTAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTCCATTCGTAAGTTc                                 >  1:649862/1‑237 (MQ=255)
                                                                                                                                                                                                                 ttAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTCCATTCGTAAGTTCAGTAAGAGTaaaaaa                  <  1:286497/251‑1 (MQ=255)
                                                                                                                                                                                                                 ttAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTCCATTCGTAAGTTCAGTAAGAGTaaaaaa                  >  1:247948/1‑251 (MQ=255)
                                                                                                                                                                                                                 ttAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTCCATTCGTAAGTTCAGTAAGAGTaaaaaa                  <  1:834553/251‑1 (MQ=255)
                                                                                                                                                                                                                 ttAATGGCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTCCATTCGTAAGTTCAGTAAGAGTaaaaa                   <  1:170150/250‑1 (MQ=255)
                                                                                                                                                                                                                       gCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAAtgttgtaat                                                                               <  1:644040/184‑4 (MQ=255)
                                                                                                                                                                                                                       gCCCTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATggtac                                                       <  1:6628/208‑4 (MQ=255)
                                                                                                                                                                                                                        cccTAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTCCATTCGTAAGTTCAGTAAGAGTaaaaaaagcttg            >  1:813685/1‑245 (MQ=255)
                                                                                                                                                                                                                           tAATGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTCCATTCGTAAGTTCAGTAAGAGTAAAAAAAGCTTGCAag        <  1:136815/251‑1 (MQ=255)
                                                                                                                                                                                                                            aaTGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAg                                                                                                                          >  1:520387/1‑136 (MQ=255)
                                                                                                                                                                                                                            aaTGATATCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCa                                                  >  1:534121/1‑208 (MQ=255)
                                                                                                                                                                                                                                 taTCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGat                                                                                                                                                                                    >  1:176699/2‑73 (MQ=255)
                                                                                                                                                                                                                                 taTCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAAtg                                                                                      >  1:415185/2‑167 (MQ=255)
                                                                                                                                                                                                                                 taTCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCAc                                                                          <  1:53735/178‑1 (MQ=255)
                                                                                                                                                                                                                                 taTCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTCCATTCGTAAGTTCAGTAAGAGTAAAAAAAGCTTGCAag        <  1:557463/244‑1 (MQ=255)
                                                                                                                                                                                                                                 taTCTGGGTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTCCATTCGTAAGTTCAGTAAGAGTAAAAAAAGCTTGCAAGAGCTTg  >  1:818981/2‑251 (MQ=255)
                                                                                                                                                                                                                                      gggTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTc                                              >  1:460207/1‑202 (MQ=255)
                                                                                                                                                                                                                                       ggTTGAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCCGATGGTAGCCGTTTAAATGTTGTAATTGCACCGATTGCGTTAGATGGTACATCCATTTCCATTCGTAAGTTc                                 <  1:751771/214‑1 (MQ=255)
                                                                                                                                                                                                                                           gAACGTGCCGGTATTCTGGAAAAAACTGATAAAGAATTCGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGTCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTAcc                                                                                                          >  1:80993/1‑137 (MQ=255)
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                        
TGATATTGAAAAGATTGATGAACTTCAAAGTGAAAGAAGCTCACTGGTAAACGAACTGGTTCAGATTGTTAACCGTGTTGCCAATAAAAGCGGTGCTTATTTGACCTCAGCCGATACTCTAGTTATGGCTGAAATTGTTGCTGATGAGATTGAGGGTTATGGACCATTACGAGATCTCATGGCTGACGATACTATAAATGATATTTTAGTTAATGGCCCTAATGACATCTGGGTTGAACGTGCTGGTATTCTGGAAAAAACTGATAAAGAATTTGTTAGTAATGAACAATTAACTGATATTGCAAAAAGGTTAGTTGCTCGGGTTGGTCGCCGTATTGATGATGGTAGTCCACTAGTGGACTCCCGACTACCTGATGGCAGCCGTTTAAATGTTGTTATTGCACCGATTGCATTAGATGGCACATCCATTTCTATTCGTAAATTCAGTAAGAATAAAAAAACATTGCAAGAGCTTG  >  1/1483105‑1483580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑