Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,482,414 G→A V167V (GTG→GTA)  unknown → Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,482,4140GA100.0% 177.3 / NA 66V167V (GTG→GTA) unknownType II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (22/44);  total (22/44)

GTATAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCCATCTCTTTATCACAAAAACTACTAGATGAGGGCATCCTTTACTTTAATTCGCATACTCAGTTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGCTGATATCCCTCGCTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAAGGTGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTGTCAAGTAAAAAAATTCCAGTGCTATTAGCCCAAGGCCCTAATGGTTCTCAAGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATACTCCGAATTTAGACATATTTAACGGGAGTCTATTTGAGCTAACACCTGCGGCGACTGAAAAATACAATTTTATTATCTACGATCAACCTATCTATAATGTTAAGAA  >  1/1482167‑1482623
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                 
gtgtagtaCCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCa                                                                                                                                                                                                                >  1:790356/4‑251 (MQ=255)
     gtaCCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTaa                                                                                                                                                                                                           >  1:66289/1‑251 (MQ=255)
                      gtgttgtgttATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTAt                                                                                                                                                                                          >  1:811641/1‑251 (MQ=255)
                           gtgttATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGc                                                                                                                                                                                      >  1:223679/1‑250 (MQ=255)
                            tgttATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGccc                                                                                                                                                                                    <  1:522171/251‑1 (MQ=255)
                            tgttATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGcc                                                                                                                                                                                     <  1:57832/250‑1 (MQ=255)
                            tgttATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGcc                                                                                                                                                                                     <  1:359564/250‑1 (MQ=255)
                              ttATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCaa                                                                                                                                                                                  <  1:330246/251‑1 (MQ=255)
                                  cGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAggt                                                                                                                                                                               >  1:666915/1‑249 (MQ=255)
                                    gTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTc                                                                                                                                                                                                   <  1:274370/228‑1 (MQ=255)
                                       aTAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAAt                                                                                                                                                                         <  1:667072/251‑1 (MQ=255)
                                        tAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGc                                                                                                                                                                                      >  1:381331/1‑237 (MQ=255)
                                        tAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATg                                                                                                                                                                        >  1:812155/1‑251 (MQ=255)
                                        tAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATg                                                                                                                                                                        <  1:310795/251‑1 (MQ=255)
                                           tGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATgg                                                                                                                                                                       <  1:316874/249‑1 (MQ=255)
                                            gACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAg                                                                                                                                                                                 <  1:633530/238‑1 (MQ=255)
                                                      ctTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCAGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTAtt                                                                                                                                                                                         <  1:710296/220‑1 (MQ=255)
                                                         tATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAggatttagat                                                                                                                                                       <  1:252126/251‑1 (MQ=255)
                                                               aaaaaCTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATttatta                                                                                                                                                 <  1:329567/251‑1 (MQ=255)
                                                               aaaaaCTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATttatta                                                                                                                                                 <  1:401956/251‑1 (MQ=255)
                                                                     tactaGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGAt                                                                                                                                           >  1:36051/1‑251 (MQ=255)
                                                                         aGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAggt                                                                                                                                                                               >  1:618416/1‑210 (MQ=255)
                                                                         aGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATg                                                                                                                                                                        >  1:633212/1‑218 (MQ=255)
                                                                         aGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATaaaa                                                                                                                                       >  1:56234/1‑251 (MQ=255)
                                                                              aGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGt                                                                                                                                                                                                             <  1:591778/176‑1 (MQ=255)
                                                                                   aTCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGcc                                                                                                                                                                                     >  1:577487/1‑195 (MQ=255)
                                                                                   aTCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAgg                                                                                                                             <  1:596392/251‑1 (MQ=255)
                                                                                        ttactttaATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATg                                                                                                                        <  1:151701/251‑1 (MQ=255)
                                                                                                       tacccaattAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTc                                                                                                         <  1:594035/244‑1 (MQ=255)
                                                                                                                aaGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAggatttaga                                                                                                                                                        <  1:661253/195‑1 (MQ=255)
                                                                                                                aaGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAg                                                                                                <  1:589932/251‑1 (MQ=255)
                                                                                                                aaGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAg                                                                                                <  1:749870/251‑1 (MQ=255)
                                                                                                                 aGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATttatta                                                                                                                                                 >  1:890194/1‑201 (MQ=255)
                                                                                                                                 aaaTCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTCAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAgc                                                                               <  1:117216/251‑2 (MQ=255)
                                                                                                                                     cATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATgg                                                                                                                                                                       >  1:315162/1‑159 (MQ=255)
                                                                                                                                     cATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATg                                                                                                                                                                        <  1:405455/158‑1 (MQ=255)
                                                                                                                                        tttAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAGCTTATTTg                                                                        <  1:21137/251‑1 (MQ=255)
                                                                                                                                            ggTGTTGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGcc                                                                                                                                                                                     <  1:821264/138‑1 (MQ=255)
                                                                                                                                                 tGATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTaa                                                                                                                          >  1:155930/1‑192 (MQ=255)
                                                                                                                                                  gATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGt                                                                                                                       <  1:878548/194‑1 (MQ=255)
                                                                                                                                                  gATATACCTCGTTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGata                                                                                             >  1:732294/1‑218 (MQ=255)
                                                                                                                                                            gtttAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATg                                                                                                                        <  1:701004/181‑1 (MQ=255)
                                                                                                                                                                aaGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGTCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAGCTTATTTGAGCTAACACCCGCAGCGACTGaaa                                                <  1:538659/251‑1 (MQ=255)
                                                                                                                                                                  gagaTACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAggatttagat                                                                                                                                                       >  1:712244/1‑146 (MQ=255)
                                                                                                                                                                     aTACTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAGCTTATTTGAGCTAACACCCGCAGCGACTGAAAAATAc                                           <  1:407631/251‑1 (MQ=255)
                                                                                                                                                                        cTGTTAAAATTGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATg                                                                                                                        <  1:543163/171‑1 (MQ=255)
                                                                                                                                                                                 ttGCTGTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAGCTTATTTGAGCt                                                                    >  1:347677/1‑214 (MQ=255)
                                                                                                                                                                                      gTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATttatta                                                                                                                                                 <  1:694739/132‑1 (MQ=255)
                                                                                                                                                                                      gTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTg                                                                                                                  <  1:428216/163‑1 (MQ=255)
                                                                                                                                                                                      gTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAgcttatt                                                                          >  1:269380/1‑197 (MQ=255)
                                                                                                                                                                                      gTATTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAGCTTATTTGAGc                                                                     <  1:748852/208‑1 (MQ=255)
                                                                                                                                                                                        aTTAAGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATgg                                                                                                                                                                       <  1:394036/108‑1 (MQ=255)
                                                                                                                                                                                           aaGTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGc                                                                                                                                    <  1:247404/140‑1 (MQ=255)
                                                                                                                                                                                             gTTGTAAGGGCGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAGCTTATTTGAGCTAACACCCGCAGCGACTGAAAAATACAATTTTATTATCTACGATCAAc                     >  1:252111/1‑249 (MQ=255)
                                                                                                                                                                                                  aagggcggtATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAGCTTATTTGAGCTAACACCCGCAGCGACTGAAAAATACAATTTTATTATCTACGATCAACctatcta              <  1:367582/245‑1 (MQ=255)
                                                                                                                                                                                                     ggcggtATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGt                                                                                                                            <  1:824408/135‑1 (MQ=255)
                                                                                                                                                                                                     ggcggtATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAGCTTATTTGAGCTAACACCCGCAGCGACTGAAAAATACAATTTTATTATCTACGATCAACctatctat             <  1:7724/246‑1 (MQ=255)
                                                                                                                                                                                                       cggtATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAGCTTATTTGAGCTAACACCCGCAGCGACTGAAAAATACAATTTTATTATCTACGATCAACCTATCTATaac          <  1:711880/249‑2 (MQ=255)
                                                                                                                                                                                                       cggtATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAGCTTATTTGAGCTAACACCCGCAGCGACTGAAAAATACAATTTTATTATCTACGATCAACCTATCTATaac          <  1:817751/249‑2 (MQ=255)
                                                                                                                                                                                                       cggtATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAGCTTATTTGAGCTAACACCCGCAGCGACTGAAAAATACAATTTTATTATCTACGATCAACCTATCTATaac          <  1:556451/249‑2 (MQ=255)
                                                                                                                                                                                                       cggtATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAGCTTATTTGAGCTAACACCCGCAGCGACTGAAAAATACAATTTTATTATCTACGATCAACCTATCTATaac          <  1:477338/249‑2 (MQ=255)
                                                                                                                                                                                                         gtATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATgg                                                                                                                                                                       >  1:698921/1‑91 (MQ=255)
                                                                                                                                                                                                               gcgcAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGTTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAGCTTATTTGAGCTAACACCCGCAGCGACTGAAAAATACAATTTTATTATCTGCGATCAACCTATCTATaacgtcaaaaa  <  1:158595/250‑10 (MQ=255)
                                                                                                                                                                                                                                   caTATTGCTAATGAGATTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAGCTTATTTg                                                                        <  1:154381/160‑1 (MQ=255)
                                                                                                                                                                                                                                                 gaTTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAGCTTATTTg                                                                        <  1:861778/146‑1 (MQ=255)
                                                                                                                                                                                                                                                 gaTTGTATCAAGTAAAAAAATTCCGGTGCTATTAGCCCAAGGTCCTAATGGTTCCCAGGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATGCTCCTAATTTAGATATATTTAACGGGAGCTTATTTGAGCTAACACCCGCAGCGACTGAAAAATACAATTTTATTATCTACGAt                         >  1:637905/1‑193 (MQ=255)
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                 
GTATAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCCATCTCTTTATCACAAAAACTACTAGATGAGGGCATCCTTTACTTTAATTCGCATACTCAGTTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGCTGATATCCCTCGCTTAAGAGATACTGTTAAAATTGCTGTATTAAGTTGTAAAGGTGGTATTGGCGCAAGTTTAATTAGTTCACATATTGCTAATGAGATTGTGTCAAGTAAAAAAATTCCAGTGCTATTAGCCCAAGGCCCTAATGGTTCTCAAGATTTAGATTTATTATTTGATAAAAAGCTATCAGGTAATGTTATTGAATATACTCCGAATTTAGACATATTTAACGGGAGTCTATTTGAGCTAACACCTGCGGCGACTGAAAAATACAATTTTATTATCTACGATCAACCTATCTATAATGTTAAGAA  >  1/1482167‑1482623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑